IVF0021120 (gene) Melon (IVF77) v1

Overview
NameIVF0021120
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein putative ty3-gypsy sub-class
Locationchr08: 22133719 .. 22134114 (-)
RNA-Seq ExpressionIVF0021120
SyntenyIVF0021120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCACAACCAAGAGGATCATCTTCATCTTCAAAGCGGCGCAGTAGAGGTGGTCGTCATCTTCATCTTCAATACAACACAATAGAGGCGTTGTCATCTTCATCTTCAATGCGATGCAACAAAGTCGGTCGTCATCTTCATCTTCAATCGGATGCAACAGAGGCGGTCGTCATCTTTATCTTTCAATATGGTGTAGCAAAAGCGATCGTCATCTTCATCTTCAATGCGGCACAGCAGAGGCGGTCTTCATCTTCATTTTTAATGCTGTGTAGCAGAGGTGGTCGTCTTCTTCATCTTCAATGCAACACAGTAGAGACGATTATCATCTTCATCTTCAACACGGTTGCAACCGATAGGATCATCATCTTCATCTTTAATGTCGCGCAACCATGA

mRNA sequence

ATGTTGCCACAACCAAGAGGATCATCTTCATCTTCAAAGCGGCGCAGTAGAGGTGGTCGTCATCTTCATCTTCAATACAACACAATAGAGGCGTTGTCATCTTCATCTTCAATGCGATGCAACAAAGTCGGTCGTCATCTTCATCTTCAATCGGATGCAACAGAGGCGGTCGTCATCTTTATCTTTCAATATGGTGTAGCAAAAGCGATCGTCATCTTCATCTTCAATGCGGCACAGCAGAGGCGGTCTTCATCTTCATTTTTAATGCTGTGTAGCAGAGGTGGTCGTCTTCTTCATCTTCAATGCAACACAGTAGAGACGATTATCATCTTCATCTTCAACACGGTTGCAACCGATAGGATCATCATCTTCATCTTTAATGTCGCGCAACCATGA

Coding sequence (CDS)

ATGTTGCCACAACCAAGAGGATCATCTTCATCTTCAAAGCGGCGCAGTAGAGGTGGTCGTCATCTTCATCTTCAATACAACACAATAGAGGCGTTGTCATCTTCATCTTCAATGCGATGCAACAAAGTCGGTCGTCATCTTCATCTTCAATCGGATGCAACAGAGGCGGTCGTCATCTTTATCTTTCAATATGGTGTAGCAAAAGCGATCGTCATCTTCATCTTCAATGCGGCACAGCAGAGGCGGTCTTCATCTTCATTTTTAATGCTGTGTAGCAGAGGTGGTCGTCTTCTTCATCTTCAATGCAACACAGTAGAGACGATTATCATCTTCATCTTCAACACGGTTGCAACCGATAGGATCATCATCTTCATCTTTAATGTCGCGCAACCATGA

Protein sequence

MLPQPRGSSSSSKRRSRGGRHLHLQYNTIEALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCNTVETIIIFIFNTVATDRIIIFIFNVAQP
Homology
BLAST of IVF0021120 vs. ExPASy TrEMBL
Match: A0A5A7U1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001320 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.8e-13
Identity = 65/147 (44.22%), Postives = 77/147 (52.38%), Query Frame = 0

Query: 4   QPRGS-SSSSKRRSRGGRHLHLQYNTIEAL------------SSSSSMRCNKVGRHLHLQ 63
           QPRG  SS S  RSR   HLHLQ    E +            SSSSSM C++   HL LQ
Sbjct: 158 QPRGPYSSLSSMRSREDHHLHLQSVAAERIFIFCHMLQPRGSSSSSSMCCSQEDHHLRLQ 217

Query: 64  SDAT-EAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCNTVETII 123
                E  +    Q+   + I++FIFN AQQ+RSSSS  M  SR  R LHLQC   ETII
Sbjct: 218 CCRNGEDHLHLRLQHDTTERIILFIFNVAQQKRSSSSSSMWRSRNDRHLHLQCGAAETII 277

Query: 124 IFIFNTV---------ATDRIIIFIFN 128
           IFI N +         A + I+IF FN
Sbjct: 278 IFILNVIDHHLHLQCDAAEAIVIFNFN 304

BLAST of IVF0021120 vs. ExPASy TrEMBL
Match: A0A5D3DRX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00420 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09
Identity = 49/92 (53.26%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 2   LPQPRGSSSSSKR-RSRGGRHLHLQYNTIEALSSSSSMRCNKVGRHLHLQSDATEAVVIF 61
           + QPRGSSSSS   RSR  RHLHLQ    E +     +  N +  HLHLQ DA EAVVIF
Sbjct: 217 MTQPRGSSSSSSMWRSRNDRHLHLQCGAAETI---IIIILNVIDHHLHLQCDAAEAVVIF 276

Query: 62  IFQYGVA---KAIVIFIFNAAQQRRSSSSFLM 90
            F   V      +VIFIFN A  RRSSSS  M
Sbjct: 277 NFNAVVIFNFNVVVIFIFNVAHHRRSSSSSSM 305

BLAST of IVF0021120 vs. ExPASy TrEMBL
Match: A0A5A7SRV7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00800 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09
Identity = 52/143 (36.36%), Postives = 68/143 (47.55%), Query Frame = 0

Query: 33  SSSSSMRCNKVGRHL--HLQSDATEAVVIFIFQY------------------GVAKAIVI 92
           S SSSM C++   HL  HLQ  A + + IFIF +                     + I+I
Sbjct: 118 SFSSSMCCSQKDNHLHFHLQCVAAKKIFIFIFSHVFRLRGSSSSSSSLSSPICCMERIII 177

Query: 93  FIFNAAQQRRSSSSFLMLCSRGGRLLHLQCNTVETIIIFIFNTV---------------- 131
           FIF+AAQQRRSSSS  + CSR G  LHL C   ET+I+FIF+                  
Sbjct: 178 FIFHAAQQRRSSSSSFLRCSRDGHRLHLSCGAAETVIVFIFHAAQQRRSSSSSFMRRSRD 237

BLAST of IVF0021120 vs. ExPASy TrEMBL
Match: A0A5D3DCM3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00330 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-07
Identity = 55/132 (41.67%), Postives = 63/132 (47.73%), Query Frame = 0

Query: 4   QPRGSSSSSKR-RSRGGRHLHLQYNTI-------------------EALSSSSSMRCNKV 63
           +PRGSSSSS    S    +LHLQY  I                      SS SSMRC++ 
Sbjct: 153 KPRGSSSSSSMCCSLDDHYLHLQYIIIFNNAAVQTIIISIFDVVQLRLSSSPSSMRCSRG 212

Query: 64  GRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCN 116
             HLHL+  A E             AI+I IF  AQ R SSS   M  SRG   LHL+C 
Sbjct: 213 YHHLHLRCGAVE-------------AIIISIFAVAQSRPSSSLSSMWRSRGHHHLHLRCG 271

BLAST of IVF0021120 vs. ExPASy TrEMBL
Match: A0A5A7UZ51 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G001080 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 1   MLPQPRGSSSSSKRR--SRGGRHLHLQYNTIEA-LSSSSSMRCNKVGRHLHLQSDATEAV 60
           +L QPRGSSSSS     S+   HLHLQ +T E  + SSSSMRC +   HL+LQ DATE +
Sbjct: 196 LLLQPRGSSSSSPLMWCSKDDLHLHLQCDTAETIILSSSSMRCTRDDHHLYLQCDATETI 255

Query: 61  VIFIF 63
           +IFIF
Sbjct: 256 IIFIF 260

BLAST of IVF0021120 vs. NCBI nr
Match: KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.02e-16
Identity = 65/147 (44.22%), Postives = 77/147 (52.38%), Query Frame = 0

Query: 4   QPRGSSSS-SKRRSRGGRHLHLQYNTIEAL------------SSSSSMRCNKVGRHLHLQ 63
           QPRG  SS S  RSR   HLHLQ    E +            SSSSSM C++   HL LQ
Sbjct: 158 QPRGPYSSLSSMRSREDHHLHLQSVAAERIFIFCHMLQPRGSSSSSSMCCSQEDHHLRLQ 217

Query: 64  SDAT-EAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCNTVETII 123
                E  +    Q+   + I++FIFN AQQ+RSSSS  M  SR  R LHLQC   ETII
Sbjct: 218 CCRNGEDHLHLRLQHDTTERIILFIFNVAQQKRSSSSSSMWRSRNDRHLHLQCGAAETII 277

Query: 124 IFIFNTV---------ATDRIIIFIFN 127
           IFI N +         A + I+IF FN
Sbjct: 278 IFILNVIDHHLHLQCDAAEAIVIFNFN 304

BLAST of IVF0021120 vs. NCBI nr
Match: KAA0033278.1 (hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 3.06e-12
Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 33  SSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLMLCS 92
           SSSS +RC++ G  LHL   A E V++FIF             +AAQQRRSSSS  M  S
Sbjct: 189 SSSSFLRCSRDGHRLHLSCGAAETVIVFIF-------------HAAQQRRSSSSSFMRRS 248

Query: 93  RGGRLLHLQCNTVETIIIFIFNTVATDR 120
           R G  LHL C   ET+I+FIF+     R
Sbjct: 249 RDGHRLHLPCGAAETVIVFIFHAAQQRR 263

BLAST of IVF0021120 vs. NCBI nr
Match: TYK26477.1 (hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 9.82e-12
Identity = 49/92 (53.26%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 2   LPQPRGSSSSSKR-RSRGGRHLHLQYNTIEALSSSSSMRCNKVGRHLHLQSDATEAVVIF 61
           + QPRGSSSSS   RSR  RHLHLQ    E +     +  N +  HLHLQ DA EAVVIF
Sbjct: 217 MTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIII---IILNVIDHHLHLQCDAAEAVVIF 276

Query: 62  IFQYGVA---KAIVIFIFNAAQQRRSSSSFLM 89
            F   V      +VIFIFN A  RRSSSS  M
Sbjct: 277 NFNAVVIFNFNVVVIFIFNVAHHRRSSSSSSM 305

BLAST of IVF0021120 vs. NCBI nr
Match: TYK21322.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 8.83e-10
Identity = 54/132 (40.91%), Postives = 63/132 (47.73%), Query Frame = 0

Query: 4   QPRGSSSSSKRR-SRGGRHLHLQYNTI-------------------EALSSSSSMRCNKV 63
           +PRGSSSSS    S    +LHLQY  I                      SS SSMRC++ 
Sbjct: 153 KPRGSSSSSSMCCSLDDHYLHLQYIIIFNNAAVQTIIISIFDVVQLRLSSSPSSMRCSRG 212

Query: 64  GRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCN 115
             HLHL+  A EA++I IF               AQ R SSS   M  SRG   LHL+C 
Sbjct: 213 YHHLHLRCGAVEAIIISIFA-------------VAQSRPSSSLSSMWRSRGHHHLHLRCG 271

BLAST of IVF0021120 vs. NCBI nr
Match: KAA0060324.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 6.19e-09
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 1   MLPQPRGSSSSSKRR--SRGGRHLHLQYNTIEALS-SSSSMRCNKVGRHLHLQSDATEAV 60
           +L QPRGSSSSS     S+   HLHLQ +T E +  SSSSMRC +   HL+LQ DATE +
Sbjct: 196 LLLQPRGSSSSSPLMWCSKDDLHLHLQCDTAETIILSSSSMRCTRDDHHLYLQCDATETI 255

Query: 61  VIFIF 62
           +IFIF
Sbjct: 256 IIFIF 260

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U1J16.8e-1344.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DRX73.5e-0953.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SRV73.5e-0936.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DCM33.3e-0741.67Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UZ511.6e-0656.92Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa... [more]
Match NameE-valueIdentityDescription
KAA0047505.11.02e-1644.22hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa][more]
KAA0033278.13.06e-1246.59hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa][more]
TYK26477.19.82e-1253.26hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa][more]
TYK21322.18.83e-1040.91glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0060324.16.19e-0956.92retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021120.2IVF0021120.2mRNA