IVF0021091 (gene) Melon (IVF77) v1

Overview
NameIVF0021091
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionupstream activation factor subunit spp27-like
Locationchr11: 30419858 .. 30421309 (-)
RNA-Seq ExpressionIVF0021091
SyntenyIVF0021091
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTTTCAGACTAAGTCGAGCGGAAGCGGTCAGAAACCCTAGCAGTTAACGTCGTCTTCATCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAGTCGAAAGCGGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGGTTAACTTTATTTCTCTTTTGTTCTAACCGATATGGCTATTTTTTAAGTATCGCTTTTCTACTTCCTTCTTTGCTGCAATCTCTTCGTTTGCTTTGTTATTTTAACTTAGCCTAGAACTTGAGGATTTGGGTGTTGTGTTCATTCGTAGTGTATCAAATGTTAGTTCTCTGTGAGCCGAATCTCTCTTTCAGACCTCAGTTGCTCAATTGAAGGTCTCTGGAATGGATGTTCTGAATTTGAAAACTAGGTTAAAGTATAGGTGGTGAACCCTACTATTCTTGAATCAAATAATCTATATACCTGTTCGCAAGTTTCGGTGAATGCATTCATTCAGCAGTGTCGTTTAAAGGATTTGCTACTGTGTGACGTTTTCTTTTCACATGGATTCGGGTTTGAGCTCTGCTTTGAAAAAGTTAGCTGCTACATAGAGCTGGGAGGGAGAAATTAGAATTTAACGTAGTATTGATTTCTTTTTTGGGAATTTGGAAGATTTTGCTGATTGATACACATGTATATAACATTTTGATGTGCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATTCATTGCCTTAGCTGTTCTAATACTTCTCTAAACCTCTCTTCCAAATCCTTGTGATGTTTTGTTATGTTCTATTAGGTTTTGTTAGGTTTTGTTTGGTTTTGTTTGGCTGATCCTATGACATCATCTTCACCATTTGGTTTTACTCAGATTTAGGAAGAGGGGGTGTTTCTTGTTTAGACATTGTTGACTAATAGTACTTTTCATTAATTAAGGTACCTTTTTCAGAATTCGTAGTTTTTTCTAGTGCAAATTTGTAGACTTAGGAAACCATTATATTCAATTTGAGAATTTAATTTGGATTATCTTGAAGCTAAAGCAGGTAGACAGAAGTTTTTCCTATTTCATATATACATAGATACATTTTGGAGAAGTAATGATCGTTGTGGAC

mRNA sequence

AAGTTTCAGACTAAGTCGAGCGGAAGCGGTCAGAAACCCTAGCAGTTAACGTCGTCTTCATCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAGTCGAAAGCGGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATTCATTGCCTTAGCTGTTCTAATACTTCTCTAAACCTCTCTTCCAAATCCTTGTGATGTTTTGTTATGTTCTATTAGGTTTTGTTAGGTTTTGTTTGGTTTTGTTTGGCTGATCCTATGACATCATCTTCACCATTTGGTTTTACTCAGATTTAGGAAGAGGGGGTGTTTCTTGTTTAGACATTGTTGACTAATAGTACTTTTCATTAATTAAGGTACCTTTTTCAGAATTCGTAGTTTTTTCTAGTGCAAATTTGTAGACTTAGGAAACCATTATATTCAATTTGAGAATTTAATTTGGATTATCTTGAAGCTAAAGCAGGTAGACAGAAGTTTTTCCTATTTCATATATACATAGATACATTTTGGAGAAGTAATGATCGTTGTGGAC

Coding sequence (CDS)

ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAGTCGAAAGCGGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAA

Protein sequence

MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG
Homology
BLAST of IVF0021091 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.8e-10
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 50  GQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTD 109
           G++     + Q  ++  + K +K+SP LA FLG  ++SR   +K++W YIK ++LQ+  D
Sbjct: 100 GEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPND 159

Query: 110 KRQINCDAKLKAIFGGREKVGMLEISKFLS 140
           KR I CD KLK++F   + + M  ++K+L+
Sbjct: 160 KRTILCDDKLKSVF-EVDTLHMFTMNKYLT 188

BLAST of IVF0021091 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 37  SKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIW 96
           S  K K  S + S +K K      +NS    ++ + +S  L  FLG  E+ R   +K IW
Sbjct: 92  STRKRKGKSESKSKRKKKKNDSPDSNSIS--VRKVLLSAPLQKFLGSEELPRTQVVKMIW 151

Query: 97  SYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPH 142
            YIK ++LQN  D+R+I CD K++ IFG  +K+ M  ++K L+ H
Sbjct: 152 QYIKEHDLQNPKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

BLAST of IVF0021091 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-08
Identity = 42/137 (30.66%), Postives = 70/137 (51.09%), Query Frame = 0

Query: 10  RFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMK 69
           RF R  + LL   +  T A   T  ++   +        S  K     K++   S   + 
Sbjct: 63  RFERSLEDLLK--ENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPIS 122

Query: 70  SLKV--SPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGRE 129
           + KV  S +LA  LG+ E++R + ++++W+YIK +NLQN  +K++I CD KL+ I G  +
Sbjct: 123 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--K 182

Query: 130 KVGMLEISKFLSPHFVK 145
              M E+ K L+ H  +
Sbjct: 183 STNMFEMHKILASHMTE 195

BLAST of IVF0021091 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.3e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
           TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 147
           AIFGGREKVGMLEISKFLSPHFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

BLAST of IVF0021091 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.3e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
           TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 147
           AIFGGREKVGMLEISKFLSPHFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

BLAST of IVF0021091 vs. ExPASy TrEMBL
Match: A0A0A0KCY9 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.0e-58
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 147
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

BLAST of IVF0021091 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 104/145 (71.72%), Postives = 119/145 (82.07%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA S +KS+A  K++
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGGI KS++VSP LAGFLG SE SR++A+KQIWSYIKLN+LQN  +KRQINCD KLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 146
           AIF GRE VG+LEI K LSPHFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

BLAST of IVF0021091 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.8e-47
Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA + +KS+A  K++
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGGI KS++VSP LAGFLG SE SR++A+KQIWSYIKLN+LQN  +KRQINCD KLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 146
           AIF GRE VG+LEI K LSPHFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

BLAST of IVF0021091 vs. NCBI nr
Match: XP_008460088.1 (PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cucumis melo var. makuwa] >TYK24519.1 protein TRI1-like [Cucumis melo var. makuwa])

HSP 1 Score: 277 bits (708), Expect = 1.35e-93
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
           TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146
           AIFGGREKVGMLEISKFLSPHFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

BLAST of IVF0021091 vs. NCBI nr
Match: XP_004154030.1 (upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262.1 hypothetical protein Csa_005564 [Cucumis sativus])

HSP 1 Score: 230 bits (586), Expect = 5.37e-75
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

BLAST of IVF0021091 vs. NCBI nr
Match: XP_038906873.1 (upstream activation factor subunit spp27-like [Benincasa hispida])

HSP 1 Score: 201 bits (510), Expect = 1.96e-63
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASG  NGTRFFRGC+TL DSLK TTQAYSSTPAVS+K KLK  + AVSGQKS A PK+ 
Sbjct: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N S GI KS  VSP LAGFLG SE SR++A+KQIW+YIKLNNLQ+  DKRQINCD KLK
Sbjct: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 145
           AIF GREKVG LEI K L+PHFVKS
Sbjct: 121 AIFDGREKVGFLEIGKLLTPHFVKS 144

BLAST of IVF0021091 vs. NCBI nr
Match: KAG6593744.1 (hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (505), Expect = 1.21e-62
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K ++K   AA S +KS+A  K++
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKASGAAASRKKSEAGEKKE 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGGI+KS++VSP LAGFLG SE SRA+A+KQIWSYIKLNNLQN  +KRQINCD KLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 145
           AIF GRE VG LEI K LSPHFVKS
Sbjct: 121 AIFDGRENVGFLEIGKLLSPHFVKS 145

BLAST of IVF0021091 vs. NCBI nr
Match: KAG6593745.1 (hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198 bits (503), Expect = 2.44e-62
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 0

Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA S +KS+A  K++
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGGI+KS++VSP LAGFLG SE SR +A+KQIWSYIKLNNLQN  +KRQINCD KLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 145
           AIF GRE VG+LEI K LSPHFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

BLAST of IVF0021091 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 5.9e-26
Identity = 71/137 (51.82%), Postives = 89/137 (64.96%), Query Frame = 0

Query: 12  FRGCKTLLDSLKPTTQAYSSTPAVSSKSK--LKPPSAAVSGQKSKA-APKRQTNSSGGIM 71
           FRG ++L   L P ++A SS  +  S  K   KP + A    K+K+ +P ++T  S GI 
Sbjct: 9   FRGARSL---LAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIF 68

Query: 72  KSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREK 131
           K   VSP LA FLG  E SR DAIK IW+YIK ++LQN  DKR+I CD  LK IF G++K
Sbjct: 69  KVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDK 128

Query: 132 VGMLEISKFLSPHFVKS 146
           VG LEISK LSPHFVK+
Sbjct: 129 VGFLEISKLLSPHFVKT 142

BLAST of IVF0021091 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-22
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 0

Query: 52  KSKAAPKRQTNSSG-GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDK 111
           K+ ++   +T   G GI+K + VS  LA F+G++E+SR  A+K+IW YIKLNNLQN  +K
Sbjct: 14  KAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNK 73

Query: 112 RQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS 146
           R+I CD +LK IF G++ VG LEISK LS HF KS
Sbjct: 74  REILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108

BLAST of IVF0021091 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-21
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 53  SKAAPKRQTNSSG---GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTD 112
           SKAA       +G   GI K+  VS  LA F G+ E++R  A+K++W Y+KL+NLQN  +
Sbjct: 16  SKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPAN 75

Query: 113 KRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS 146
           K++I+CD KLK IF G++KVG+ EI K LSPHF KS
Sbjct: 76  KKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

BLAST of IVF0021091 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 0

Query: 9   TRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIM 68
           T  FR   T L SL+     ++S PA    +KL+   A  S  +S            GIM
Sbjct: 16  TTSFRNPSTPLSSLR-----FASHPA----AKLRLVRAVTSATESSEPTATNKRVPRGIM 75

Query: 69  KSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREK 128
           K   VSP +   +   EI+R  A+K+IW+YIK ++LQ+  +KR+I CD KLK IF GR++
Sbjct: 76  KPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 135

Query: 129 VGMLEISKFLSPHFV 144
           VG LEI+K + PHF+
Sbjct: 136 VGFLEIAKLIGPHFL 141

BLAST of IVF0021091 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.2e-15
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 0

Query: 22  LKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFL 81
           L P++   S     + +      SAA +        K  T    GIMK   VS  +   +
Sbjct: 25  LSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTK--TREPRGIMKPRPVSQAMQDVV 84

Query: 82  GQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPH 141
           G  EI R  A+K+IW+YIK ++LQ+  +KR I CD KLK IF G+E+VG LEI+K + PH
Sbjct: 85  GVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPH 144

Query: 142 FV 144
           F+
Sbjct: 145 FL 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O745035.8e-1036.67Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
Q050243.8e-0937.14Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ... [more]
Q087474.2e-0830.66Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
Match NameE-valueIdentityDescription
A0A5D3DMJ24.3e-72100.00Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00... [more]
A0A1S3CBA04.3e-72100.00protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1[more]
A0A0A0KCY96.0e-5882.88SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 S... [more]
A0A6J1KHF51.2e-4771.72upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1KEZ22.8e-4771.03upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
Match NameE-valueIdentityDescription
XP_008460088.11.35e-93100.00PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cuc... [more]
XP_004154030.15.37e-7582.88upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262.... [more]
XP_038906873.11.96e-6374.48upstream activation factor subunit spp27-like [Benincasa hispida][more]
KAG6593744.11.21e-6272.41hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6593745.12.44e-6272.41hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT3G03590.15.9e-2651.82SWIB/MDM2 domain superfamily protein [more]
AT2G35605.16.8e-2253.68SWIB/MDM2 domain superfamily protein [more]
AT1G31760.14.4e-2151.04SWIB/MDM2 domain superfamily protein [more]
AT2G14880.11.7e-1740.74SWIB/MDM2 domain superfamily protein [more]
AT4G34290.16.2e-1539.34SWIB/MDM2 domain superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 67..146
e-value: 2.2E-28
score: 110.3
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 70..142
e-value: 9.7E-30
score: 102.3
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 66..144
score: 21.914476
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 60..146
e-value: 9.5E-28
score: 98.0
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 64..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..68
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 7..145
NoneNo IPR availablePANTHERPTHR13844:SF67PROTEIN TRI1coord: 7..145
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 71..142
e-value: 3.73718E-35
score: 114.948

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021091.1IVF0021091.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus