IVF0021080 (gene) Melon (IVF77) v1

Overview


Name	IVF0021080
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Low temperature and salt responsive protein family
Location	chr10: 5075601 .. 5075878 (+)
RNA-Seq Expression	IVF0021080
Synteny	IVF0021080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCAGAAACTTTTGTAGAAATCATATTAGCAATTCTCCTTCCACCTCTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTCTGATACCTTCAAACTCTGTTTCCTTTTCTCATTCATTTACAAGAAAAGAAACCTTGTGTTTGATCTTTTTTTTCTTTTCCTTTTTGTGGTCTTTTGATTTGCAAGTGCAGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCTGGAATTATATATGCAATTTATGTTATTGTTGGGTAA

mRNA sequence

ATGGGTTCAGAAACTTTTGTAGAAATCATATTAGCAATTCTCCTTCCACCTCTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCTGGAATTATATATGCAATTTATGTTATTGTTGGGTAA

Coding sequence (CDS)

ATGGGTTCAGAAACTTTTGTAGAAATCATATTAGCAATTCTCCTTCCACCTCTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCTGGAATTATATATGCAATTTATGTTATTGTTGGGTAA

Protein sequence

MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG

Homology

[Close]

BLAST of IVF0021080 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-18
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVI 53
          M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYV+
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of IVF0021080 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-17
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIV 54
          M S TF+E+ILAI+LPP+GVFLRYG  VEFWICLLLT+LGYIPGIIYA+YV+V
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

[Close]

BLAST of IVF0021080 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.1e-17
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIV 54
          MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YV+V
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of IVF0021080 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.1e-17
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIV 54
          MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YV+V
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of IVF0021080 vs. ExPASy Swiss-Prot
Match: Q9ZNS6 (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-16
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVI 53
          M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y+I
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of IVF0021080 vs. ExPASy TrEMBL
Match: A0A1S3BED1 (low temperature-induced protein lt101.2 OS=Cucumis melo OX=3656 GN=LOC103488748 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54

[Close]

BLAST of IVF0021080 vs. ExPASy TrEMBL
Match: A0A6J1KKG3 (low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493964 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of IVF0021080 vs. ExPASy TrEMBL
Match: A0A6J1FUC5 (low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC111446956 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of IVF0021080 vs. ExPASy TrEMBL
Match: A0A0A0KRZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175890 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of IVF0021080 vs. ExPASy TrEMBL
Match: A0A6J1CCW8 (low temperature-induced protein lt101.2 OS=Momordica charantia OX=3673 GN=LOC111010062 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.1e-20
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 55
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of IVF0021080 vs. NCBI nr
Match: XP_008445856.1 (PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo])

HSP 1 Score: 107 bits (268), Expect = 2.37e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54

[Close]

BLAST of IVF0021080 vs. NCBI nr
Match: XP_022941664.1 (low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022999688.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_022999696.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_023554157.1 low temperature-induced protein lt101.2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107 bits (266), Expect = 4.79e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of IVF0021080 vs. NCBI nr
Match: XP_038893278.1 (low temperature-induced protein lt101.2 [Benincasa hispida])

HSP 1 Score: 106 bits (264), Expect = 9.68e-29
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54
          MGSETFVEI+LAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEILLAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of IVF0021080 vs. NCBI nr
Match: XP_026412058.1 (low temperature-induced protein lt101.2 [Papaver somniferum])

HSP 1 Score: 106 bits (264), Expect = 9.68e-29
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPIGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of IVF0021080 vs. NCBI nr
Match: XP_022139042.1 (low temperature-induced protein lt101.2 [Momordica charantia])

HSP 1 Score: 105 bits (263), Expect = 1.38e-28
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of IVF0021080 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 104.0 bits (258), Expect = 3.9e-23
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 55
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of IVF0021080 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVI 53
          M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYV+
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of IVF0021080 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-17
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVI 53
          M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y+I
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of IVF0021080 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 73.2 bits (178), Expect = 7.3e-14
Identity = 34/52 (65.38%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVI 53
          MGS  F+E++ AI +PP+GVFLRYG G+EFW+CLLLT+  +IPG+IYAIYV+
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]

BLAST of IVF0021080 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-13
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 4  ETFVEIILAILLPPLGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVIV 54
          E F EI++AILLPPLGV L+ G C VEF ICL+LTILGYIPGIIYA+YVIV
Sbjct: 6  EVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56

The following BLAST results are available for this feature:

BLAST of IVF0021080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNQ7	2.8e-18	82.69	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]
Q9ARD5	1.8e-17	79.25	Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE...	[more]
P68178	4.1e-17	81.13	Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=...	[more]
P68179	4.1e-17	81.13	Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE...	[more]
Q9ZNS6	2.0e-16	73.08	Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1	[more]

BLAST of IVF0021080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BED1	2.4e-20	100.00	low temperature-induced protein lt101.2 OS=Cucumis melo OX=3656 GN=LOC103488748 ...	[more]
A0A6J1KKG3	4.1e-20	98.15	low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493...	[more]
A0A6J1FUC5	4.1e-20	98.15	low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0KRZ2	4.1e-20	98.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175890 PE=3 SV=1	[more]
A0A6J1CCW8	9.1e-20	96.30	low temperature-induced protein lt101.2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of IVF0021080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445856.1	2.37e-29	100.00	PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo]	[more]
XP_022941664.1	4.79e-29	98.15	low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low...	[more]
XP_038893278.1	9.68e-29	96.30	low temperature-induced protein lt101.2 [Benincasa hispida]	[more]
XP_026412058.1	9.68e-29	96.30	low temperature-induced protein lt101.2 [Papaver somniferum]	[more]
XP_022139042.1	1.38e-28	96.30	low temperature-induced protein lt101.2 [Momordica charantia]	[more]

BLAST of IVF0021080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38905.1	3.9e-23	94.44	Low temperature and salt responsive protein family	[more]
AT3G05880.1	2.0e-19	82.69	Low temperature and salt responsive protein family	[more]
AT3G05890.1	1.4e-17	73.08	Low temperature and salt responsive protein family	[more]
AT1G57550.1	7.3e-14	65.38	Low temperature and salt responsive protein family	[more]
AT4G30650.1	4.8e-13	76.47	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 6..53 e-value: 1.0E-21 score: 76.8
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..53
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 10..25
None	No IPR available	PANTHER	PTHR21659:SF96	BNAA04G22250D PROTEIN	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021080.2	IVF0021080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane