IVF0021055 (gene) Melon (IVF77) v1

Overview


Name	IVF0021055
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr01: 14485611 .. 14485961 (-)
RNA-Seq Expression	IVF0021055
Synteny	IVF0021055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTAACCATAATGATAACCAAGATGAGGGTGATAGTTTTGATGGCTTAGACGATGACCAAGTTACATTATTGGGGGAGTCGAGACGTGTGGGACATGGAGTAGTTAGAAGAAGAGGTCGTGGGAGAGTTTACCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCGGGAAAACTGATCTAAAGGAGTACATTCAGTGGGAAAAAAAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTGACGAGCAGAAGGTTAGATTTTGTGTTTCCAAATTTAAGGATTATGCTTAA

mRNA sequence

ATGGTAATTAACCATAATGATAACCAAGATGAGGGTGATAGTTTTGATGGCTTAGACGATGACCAAGTTACATTATTGGGGGAGTCGAGACGTGTGGGACATGGAGTAGTTAGAAGAAGAGGTCGTGGGAGAGTTTACCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCGGGAAAACTGATCTAAAGGAGTACATTCAGTGGGAAAAAAAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTGACGAGCAGAAGGTTAGATTTTGTGTTTCCAAATTTAAGGATTATGCTTAA

Coding sequence (CDS)

ATGGTAATTAACCATAATGATAACCAAGATGAGGGTGATAGTTTTGATGGCTTAGACGATGACCAAGTTACATTATTGGGGGAGTCGAGACGTGTGGGACATGGAGTAGTTAGAAGAAGAGGTCGTGGGAGAGTTTACCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCGGGAAAACTGATCTAAAGGAGTACATTCAGTGGGAAAAAAAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTGACGAGCAGAAGGTTAGATTTTGTGTTTCCAAATTTAAGGATTATGCTTAA

Protein sequence

MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA

Homology

[Close]

BLAST of IVF0021055 vs. ExPASy TrEMBL
Match: A0A5A7T993 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001470 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.1e-50
Identity = 101/116 (87.07%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQF 60
           MVINHNDNQDEGD  DGLDDDQVTLL ESRR GH VVRR+GRGR YQNIQRRAQQEAPQF
Sbjct: 9   MVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQF 68

Query: 61  ERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA 117
           ERN+ AIKFKI KFFGKTD +EYIQWEK+VENVFACHNFT+EQKVRFCV KFKDYA
Sbjct: 69  ERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYA 124

[Close]

BLAST of IVF0021055 vs. ExPASy TrEMBL
Match: A0A5D3CHG3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001250 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48
Identity = 100/116 (86.21%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQF 60
           M+INHNDNQDEGD  D LDDDQVTLLGE RRVGHGVVRRRGRGR YQNIQRRAQQEA QF
Sbjct: 33  MLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQF 92

Query: 61  ERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA 117
           E NM AIKFKIPKFF KTD KEYI+WEK+VENVF CHNFTDEQKVRF VSK KDYA
Sbjct: 93  ECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYA 148

[Close]

BLAST of IVF0021055 vs. ExPASy TrEMBL
Match: A0A5A7TK52 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001000 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48
Identity = 100/116 (86.21%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQF 60
           M+INHNDNQDEGD  D LDDDQVTLLGE RRVGHGVVRRRGRGR YQNIQRRAQQEA QF
Sbjct: 53  MLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQF 112

Query: 61  ERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA 117
           E NM AIKFKIPKFF KTD KEYI+WEK+VENVF CHNFTDEQKVRF VSK KDYA
Sbjct: 113 ECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYA 168

[Close]

BLAST of IVF0021055 vs. ExPASy TrEMBL
Match: A0A5A7TYI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00200 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.4e-47
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQF 60
           M INHN+NQ EGD  D LDDDQVTLL E RRVGHGVVRRRG G+ YQNIQRR QQE PQ 
Sbjct: 29  MAINHNNNQYEGDGLDDLDDDQVTLLVEPRRVGHGVVRRRGHGKAYQNIQRRTQQETPQL 88

Query: 61  ERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDY 116
           ERNM AIKFKIPKFFGKTD +EYIQWEK+VENVFACHNF++EQKVRFCV+KFKDY
Sbjct: 89  ERNMAAIKFKIPKFFGKTDPEEYIQWEKEVENVFACHNFSNEQKVRFCVAKFKDY 143

[Close]

BLAST of IVF0021055 vs. ExPASy TrEMBL
Match: A0A5D3CFQ1 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00990 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 33  GHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVEN 92
           G+GVVRRRGR R YQNIQRRAQQEAP+FE NMGAIKFKIPKFF KTD +EYIQWEK+VEN
Sbjct: 9   GYGVVRRRGRRRAYQNIQRRAQQEAPRFECNMGAIKFKIPKFFRKTDPEEYIQWEKEVEN 68

Query: 93  VFACHNFTDEQKVRFCVSKFKDYA 117
           VF CHNF DEQKVRFCVSKFKDYA
Sbjct: 69  VFVCHNFIDEQKVRFCVSKFKDYA 92

[Close]

BLAST of IVF0021055 vs. NCBI nr
Match: KAA0038045.1 (uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa] >TYK20558.1 uncharacterized protein E5676_scaffold237G001470 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (525), Expect = 1.59e-64
Identity = 101/116 (87.07%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQF 60
           MVINHNDNQDEGD  DGLDDDQVTLL ESRR GH VVRR+GRGR YQNIQRRAQQEAPQF
Sbjct: 9   MVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQF 68

Query: 61  ERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA 116
           ERN+ AIKFKI KFFGKTD +EYIQWEK+VENVFACHNFT+EQKVRFCV KFKDYA
Sbjct: 69  ERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYA 124

[Close]

BLAST of IVF0021055 vs. NCBI nr
Match: TYK09709.1 (uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (512), Expect = 3.07e-63
Identity = 100/116 (86.21%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQF 60
           M+INHNDNQDEGD  D LDDDQVTLLGE RRVGHGVVRRRGRGR YQNIQRRAQQEA QF
Sbjct: 33  MLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQF 92

Query: 61  ERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA 116
           E NM AIKFKIPKFF KTD KEYI+WEK+VENVF CHNFTDEQKVRF VSK KDYA
Sbjct: 93  ECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYA 148

[Close]

BLAST of IVF0021055 vs. NCBI nr
Match: KAA0043652.1 (uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (512), Expect = 5.75e-63
Identity = 100/116 (86.21%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQF 60
           M+INHNDNQDEGD  D LDDDQVTLLGE RRVGHGVVRRRGRGR YQNIQRRAQQEA QF
Sbjct: 53  MLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQF 112

Query: 61  ERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA 116
           E NM AIKFKIPKFF KTD KEYI+WEK+VENVF CHNFTDEQKVRF VSK KDYA
Sbjct: 113 ECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYA 168

[Close]

BLAST of IVF0021055 vs. NCBI nr
Match: KAA0047036.1 (uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (499), Expect = 5.35e-62
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQF 60
           M INHN+NQ EGD  D LDDDQVTLL E RRVGHGVVRRRG G+ YQNIQRR QQE PQ 
Sbjct: 29  MAINHNNNQYEGDGLDDLDDDQVTLLVEPRRVGHGVVRRRGHGKAYQNIQRRTQQETPQL 88

Query: 61  ERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDY 115
           ERNM AIKFKIPKFFGKTD +EYIQWEK+VENVFACHNF++EQKVRFCV+KFKDY
Sbjct: 89  ERNMAAIKFKIPKFFGKTDPEEYIQWEKEVENVFACHNFSNEQKVRFCVAKFKDY 143

[Close]

BLAST of IVF0021055 vs. NCBI nr
Match: KAA0040916.1 (uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (385), Expect = 2.57e-44
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 33  GHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVEN 92
           G+GVVRRRGR R YQNIQRRAQQEAP+FE NMGAIKFKIPKFF KTD +EYIQWEK+VEN
Sbjct: 9   GYGVVRRRGRRRAYQNIQRRAQQEAPRFECNMGAIKFKIPKFFRKTDPEEYIQWEKEVEN 68

Query: 93  VFACHNFTDEQKVRFCVSKFKDYA 116
           VF CHNF DEQKVRFCVSKFKDYA
Sbjct: 69  VFVCHNFIDEQKVRFCVSKFKDYA 92

The following BLAST results are available for this feature:

BLAST of IVF0021055 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T993	8.1e-50	87.07	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CHG3	2.6e-48	86.21	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TK52	2.6e-48	86.21	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TYI0	6.4e-47	81.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CFQ1	1.1e-33	86.90	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of IVF0021055 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038045.1	1.59e-64	87.07	uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa] >TYK2...	[more]
TYK09709.1	3.07e-63	86.21	uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]	[more]
KAA0043652.1	5.75e-63	86.21	uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]	[more]
KAA0047036.1	5.35e-62	81.74	uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]	[more]
KAA0040916.1	2.57e-44	86.90	uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0021055 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 50..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021055.1	IVF0021055.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding