IVF0021036 (gene) Melon (IVF77) v1

Overview


Name	IVF0021036
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP-dependent helicase ATRX
Location	chr05: 15288454 .. 15288681 (+)
RNA-Seq Expression	IVF0021036
Synteny	IVF0021036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTCTGCTGCAGATTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCGATACGGAAAGTGAAGTCTGGGGATAAAGGACTTGGATGCATTCTTGCTCATACAATGGGTCTTGGTAAAACTTTTCAGGTATTTGTTTCTTCGAGCTGTCATAGACCCTTGTTTATTTATATGAAAGGTGGTTCTTTGATTTCCCCCCTCTGTAAAGAAGATAAATAA

mRNA sequence

ATGGTTTTTCTGCTGCAGATTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCGATACGGAAAGTGAAGTCTGGGGATAAAGGACTTGGATGCATTCTTGCTCATACAATGGGTCTTGGTAAAACTTTTCAGGTATTTGTTTCTTCGAGCTGTCATAGACCCTTGTTTATTTATATGAAAGGTGGTTCTTTGATTTCCCCCCTCTGTAAAGAAGATAAATAA

Coding sequence (CDS)

ATGGTTTTTCTGCTGCAGATTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCGATACGGAAAGTGAAGTCTGGGGATAAAGGACTTGGATGCATTCTTGCTCATACAATGGGTCTTGGTAAAACTTTTCAGGTATTTGTTTCTTCGAGCTGTCATAGACCCTTGTTTATTTATATGAAAGGTGGTTCTTTGATTTCCCCCCTCTGTAAAGAAGATAAATAA

Protein sequence

MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSSSCHRPLFIYMKGGSLISPLCKEDK

Homology

[Close]

BLAST of IVF0021036 vs. ExPASy Swiss-Prot
Match: F4HW51 (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 3.6e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           Q++GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

[Close]

BLAST of IVF0021036 vs. ExPASy Swiss-Prot
Match: A4IHD2 (Helicase ARIP4 OS=Xenopus tropicalis OX=8364 GN=rad54l2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-08
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QI GIRF+++N+++S+ +  SG  G GCILAH+MGLGKT QV
Sbjct: 273 QIGGIRFLYDNLVESLERF-SGSSGFGCILAHSMGLGKTLQV 313

[Close]

BLAST of IVF0021036 vs. ExPASy Swiss-Prot
Match: Q9Y4B4 (Helicase ARIP4 OS=Homo sapiens OX=9606 GN=RAD54L2 PE=1 SV=4)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QI GIRF+++N+++S+ + K+   G GCILAH+MGLGKT QV
Sbjct: 275 QIGGIRFLYDNLVESLERFKT-SSGFGCILAHSMGLGKTLQV 315

[Close]

BLAST of IVF0021036 vs. ExPASy Swiss-Prot
Match: Q99NG0 (Helicase ARIP4 OS=Mus musculus OX=10090 GN=Rad54l2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QI GIRF+++N+++S+ + K+   G GCILAH+MGLGKT QV
Sbjct: 274 QIGGIRFLYDNLVESLERFKT-SSGFGCILAHSMGLGKTLQV 314

[Close]

BLAST of IVF0021036 vs. ExPASy Swiss-Prot
Match: P46100 (Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 6    QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
            Q+ G++FMW+   +S++K K    G GCILAH MGLGKT QV
Sbjct: 1564 QVDGVQFMWDCCCESVKKTKK-SPGSGCILAHCMGLGKTLQV 1604

[Close]

BLAST of IVF0021036 vs. ExPASy TrEMBL
Match: A0A0A0LH69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G076020 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSSSCHRPLFIY 60
          MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVS SC+RPLFIY
Sbjct: 1  MVFLLQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSLSCYRPLFIY 60

Query: 61 MKGGSLISPLCKEDK 76
          MKGGSLISPL KEDK
Sbjct: 61 MKGGSLISPLYKEDK 75

[Close]

BLAST of IVF0021036 vs. ExPASy TrEMBL
Match: A0A6A1URC6 (ATP-dependent helicase ATRX OS=Morella rubra OX=262757 GN=CJ030_MR8G002086 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSSSCHRP 57
           Q+SGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ   +SS H P
Sbjct: 466 QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ--PASSPHSP 514

[Close]

BLAST of IVF0021036 vs. ExPASy TrEMBL
Match: A0A1S3B502 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 627 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 668

[Close]

BLAST of IVF0021036 vs. ExPASy TrEMBL
Match: A0A1S3B4Z9 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 725 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 766

[Close]

BLAST of IVF0021036 vs. ExPASy TrEMBL
Match: A0A1S3V5P5 (ATP-dependent helicase ATRX OS=Vigna radiata var. radiata OX=3916 GN=LOC106771923 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.2e-15
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 635 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 676

[Close]

BLAST of IVF0021036 vs. NCBI nr
Match: KAF8401988.1 (hypothetical protein HHK36_012939 [Tetracentron sinense])

HSP 1 Score: 92.4 bits (228), Expect = 1.10e-19
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFVSS-SCHRPLFIYMKGG 65
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV     S  R + + +K  
Sbjct: 490 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYSAMRSVDLGLKSA 549

Query: 66  SLISPL 70
            +++P+
Sbjct: 550 LIVTPV 555

[Close]

BLAST of IVF0021036 vs. NCBI nr
Match: KAG6700572.1 (hypothetical protein I3842_08G118800 [Carya illinoinensis])

HSP 1 Score: 89.7 bits (221), Expect = 9.63e-19
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFV 49
           Q+SGIRFMWENII+SIRKVKSGDKGLGCILAHTMGLGKTFQV++
Sbjct: 724 QVSGIRFMWENIIESIRKVKSGDKGLGCILAHTMGLGKTFQVYM 767

[Close]

BLAST of IVF0021036 vs. NCBI nr
Match: KAG7967741.1 (hypothetical protein I3843_08G114500 [Carya illinoinensis])

HSP 1 Score: 89.7 bits (221), Expect = 9.63e-19
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFV 49
           Q+SGIRFMWENII+SIRKVKSGDKGLGCILAHTMGLGKTFQV++
Sbjct: 724 QVSGIRFMWENIIESIRKVKSGDKGLGCILAHTMGLGKTFQVYM 767

[Close]

BLAST of IVF0021036 vs. NCBI nr
Match: KAG2693963.1 (hypothetical protein I3760_08G119200 [Carya illinoinensis])

HSP 1 Score: 89.7 bits (221), Expect = 9.63e-19
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFV 49
           Q+SGIRFMWENII+SIRKVKSGDKGLGCILAHTMGLGKTFQV++
Sbjct: 724 QVSGIRFMWENIIESIRKVKSGDKGLGCILAHTMGLGKTFQVYM 767

[Close]

BLAST of IVF0021036 vs. NCBI nr
Match: XP_007143955.1 (hypothetical protein PHAVU_007G116600g [Phaseolus vulgaris] >ESW15949.1 hypothetical protein PHAVU_007G116600g [Phaseolus vulgaris])

HSP 1 Score: 89.7 bits (221), Expect = 9.72e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 47
           QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 396 QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 437

[Close]

BLAST of IVF0021036 vs. TAIR 10
Match: AT1G08600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           Q++GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

[Close]

BLAST of IVF0021036 vs. TAIR 10
Match: AT1G08600.3 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           Q++GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

[Close]

BLAST of IVF0021036 vs. TAIR 10
Match: AT1G08600.4 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           Q++GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

[Close]

BLAST of IVF0021036 vs. TAIR 10
Match: AT1G08600.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 6   QISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 48
           Q++GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Sbjct: 723 QVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQV 764

The following BLAST results are available for this feature:

BLAST of IVF0021036 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HW51	3.6e-16	90.48	Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=...	[more]
A4IHD2	3.7e-08	59.52	Helicase ARIP4 OS=Xenopus tropicalis OX=8364 GN=rad54l2 PE=2 SV=1	[more]
Q9Y4B4	1.1e-07	57.14	Helicase ARIP4 OS=Homo sapiens OX=9606 GN=RAD54L2 PE=1 SV=4	[more]
Q99NG0	1.1e-07	57.14	Helicase ARIP4 OS=Mus musculus OX=10090 GN=Rad54l2 PE=1 SV=1	[more]
P46100	1.2e-06	54.76	Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=5	[more]

BLAST of IVF0021036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH69	1.3e-32	96.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G076020 PE=3 SV=1	[more]
A0A6A1URC6	3.2e-15	86.27	ATP-dependent helicase ATRX OS=Morella rubra OX=262757 GN=CJ030_MR8G002086 PE=3 ...	[more]
A0A1S3B502	4.2e-15	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A1S3B4Z9	4.2e-15	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A1S3V5P5	4.2e-15	100.00	ATP-dependent helicase ATRX OS=Vigna radiata var. radiata OX=3916 GN=LOC10677192...	[more]

BLAST of IVF0021036 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8401988.1	1.10e-19	69.70	hypothetical protein HHK36_012939 [Tetracentron sinense]	[more]
KAG6700572.1	9.63e-19	90.91	hypothetical protein I3842_08G118800 [Carya illinoinensis]	[more]
KAG7967741.1	9.63e-19	90.91	hypothetical protein I3843_08G114500 [Carya illinoinensis]	[more]
KAG2693963.1	9.63e-19	90.91	hypothetical protein I3760_08G119200 [Carya illinoinensis]	[more]
XP_007143955.1	9.72e-19	100.00	hypothetical protein PHAVU_007G116600g [Phaseolus vulgaris] >ESW15949.1 hypothet...	[more]

BLAST of IVF0021036 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08600.1	2.6e-17	90.48	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.3	2.6e-17	90.48	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.4	2.6e-17	90.48	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.2	2.6e-17	90.48	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 4..62 e-value: 2.9E-12 score: 47.9
None	No IPR available	PANTHER	PTHR45797:SF1	RAD54-LIKE	coord: 6..49
IPR044574	ATPase ARIP4-like	PANTHER	PTHR45797	RAD54-LIKE	coord: 6..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021036.2	IVF0021036.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0046872	metal ion binding