IVF0020989 (gene) Melon (IVF77) v1

Overview
NameIVF0020989
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr11: 13156125 .. 13156316 (-)
RNA-Seq ExpressionIVF0020989
SyntenyIVF0020989
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAACCTCAAAGGCATCAAACCTTTCCCAACAACGGTGGAGAAGTTGTGTCTGAAGTACTTGCCTACCCTTGCGAGATACCCACAGATTGATATGGTGGGAGGTAGGTGTAATTTGGTGGAACTCAACTGTATAATAACCCTCCATCAAAATGAGGAGGAAGAATGCCACCAGAAGACACAAAAATAG

mRNA sequence

ATGAGGAACCTCAAAGGCATCAAACCTTTCCCAACAACGGTGGAGAAGTTGTGTCTGAAGTACTTGCCTACCCTTGCGAGATACCCACAGATTGATATGGTGGGAGGTAGGTGTAATTTGGTGGAACTCAACTGTATAATAACCCTCCATCAAAATGAGGAGGAAGAATGCCACCAGAAGACACAAAAATAG

Coding sequence (CDS)

ATGAGGAACCTCAAAGGCATCAAACCTTTCCCAACAACGGTGGAGAAGTTGTGTCTGAAGTACTTGCCTACCCTTGCGAGATACCCACAGATTGATATGGTGGGAGGTAGGTGTAATTTGGTGGAACTCAACTGTATAATAACCCTCCATCAAAATGAGGAGGAAGAATGCCACCAGAAGACACAAAAATAG

Protein sequence

MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQKTQK
Homology
BLAST of IVF0020989 vs. ExPASy TrEMBL
Match: A0A5A7V6C0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00540 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.9e-14
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1   MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQK 60
           MRN KG K FPT  +K C KYL TLARYPQ DMVGG+CN+  LN I TL+QN+EEEC  K
Sbjct: 131 MRNPKGSKSFPTMAKKFCQKYLSTLARYPQTDMVGGKCNMASLNRIRTLNQNKEEECQGK 190

Query: 61  TQ 63
            +
Sbjct: 191 VE 192

BLAST of IVF0020989 vs. ExPASy TrEMBL
Match: A0A5A7ULS0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00200 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.3e-13
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 1   MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQK 60
           M++ K + PFP+TVEKLCLKYLPTLA+YPQI M  GR NL  L+ I +LHQN+EEE  QK
Sbjct: 110 MKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQK 169

Query: 61  TQK 64
           TQK
Sbjct: 170 TQK 171

BLAST of IVF0020989 vs. ExPASy TrEMBL
Match: A0A5D3DFD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00890 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.3e-13
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 1   MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQK 60
           M + +G KPFPTT+EKLC KYLPTLARYP+I+M GGR NL  LN + TLH N+EEE  Q 
Sbjct: 54  MGHFEGAKPFPTTMEKLCFKYLPTLARYPKIEM-GGRVNLAGLNRLRTLHLNKEEELRQN 113

Query: 61  T 62
           T
Sbjct: 114 T 113

BLAST of IVF0020989 vs. ExPASy TrEMBL
Match: A0A5A7V0F9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00260 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-12
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 1   MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITL 50
           MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVG   N V  N  + L
Sbjct: 60  MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGEPKNTVLFNLDLRL 108

BLAST of IVF0020989 vs. ExPASy TrEMBL
Match: A0A0A0L9R5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 1  MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQK 60
          M++ K  KPFPT VEKLC KYLPT  RYPQI+M GGR NL  LN + ++H N+E  C QK
Sbjct: 10 MKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM-GGRVNLAGLNRLRSIHSNKEGLCRQK 69

Query: 61 TQK 64
          TQK
Sbjct: 70 TQK 71

BLAST of IVF0020989 vs. NCBI nr
Match: KAA0060350.1 (hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK22100.1 hypothetical protein E5676_scaffold318G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 4.82e-19
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 1   MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQK 60
           M + +G KPFPTT+EKLC KYLPTLARYP+I+M GGR NL  LN + TLH N+EEE  Q 
Sbjct: 54  MGHFEGAKPFPTTMEKLCFKYLPTLARYPKIEM-GGRVNLAGLNRLRTLHLNKEEELRQN 113

BLAST of IVF0020989 vs. NCBI nr
Match: KAA0063168.1 (hypothetical protein E6C27_scaffold381G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 7.41e-19
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1   MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQK 60
           MRN KG K FPT  +K C KYL TLARYPQ DMVGG+CN+  LN I TL+QN+EEEC  K
Sbjct: 131 MRNPKGSKSFPTMAKKFCQKYLSTLARYPQTDMVGGKCNMASLNRIRTLNQNKEEECQGK 190

Query: 61  TQ 62
            +
Sbjct: 191 VE 192

BLAST of IVF0020989 vs. NCBI nr
Match: KGN57724.1 (hypothetical protein Csa_010778 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 3.95e-18
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 1  MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQK 60
          M++ K  KPFPT VEKLC KYLPT  RYPQI+M GGR NL  LN + ++H N+E  C QK
Sbjct: 10 MKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM-GGRVNLAGLNRLRSIHSNKEGLCRQK 69

Query: 61 TQK 63
          TQK
Sbjct: 70 TQK 71

BLAST of IVF0020989 vs. NCBI nr
Match: KAA0045334.1 (hypothetical protein E6C27_scaffold316G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.52e-17
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 14 VEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQKTQK 63
          VEKL LKYL TLARYPQ DMVGG+CNLV LN   TLHQN+EEE HQK Q+
Sbjct: 2  VEKLSLKYLSTLARYPQTDMVGGKCNLVGLNRTRTLHQNKEEEHHQKAQR 51

BLAST of IVF0020989 vs. NCBI nr
Match: KAA0054399.1 (hypothetical protein E6C27_scaffold24G001450 [Cucumis melo var. makuwa] >TYJ96826.1 hypothetical protein E5676_scaffold2750G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.56e-17
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 1   MRNLKGIKPFPTTVEKLCLKYLPTLARYPQIDMVGGRCNLVELNCIITLHQNEEEECHQK 60
           M++ K + PFP+TVEKLCLKYLPTLA+YPQI M  GR NL  L+ I +LHQN+EEE  QK
Sbjct: 110 MKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQK 169

Query: 61  TQK 63
           TQK
Sbjct: 170 TQK 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V6C03.9e-1464.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7ULS04.3e-1366.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DFD37.3e-1365.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V0F92.8e-1279.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0L9R54.8e-1261.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0060350.14.82e-1965.57hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK2210... [more]
KAA0063168.17.41e-1964.52hypothetical protein E6C27_scaffold381G00540 [Cucumis melo var. makuwa][more]
KGN57724.13.95e-1861.90hypothetical protein Csa_010778 [Cucumis sativus][more]
KAA0045334.11.52e-1776.00hypothetical protein E6C27_scaffold316G001090 [Cucumis melo var. makuwa][more]
KAA0054399.11.56e-1766.67hypothetical protein E6C27_scaffold24G001450 [Cucumis melo var. makuwa] >TYJ9682... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020989.1IVF0020989.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding