IVF0020982 (gene) Melon (IVF77) v1

Overview
NameIVF0020982
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptioncircumsporozoite protein-like
Locationchr04: 1947004 .. 1947522 (+)
RNA-Seq ExpressionIVF0020982
SyntenyIVF0020982
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGATCCAGAGACGGCGATTCTGTTCACGGAAGCGCCATTGCCAGGGGTGGAGGTTGGCGACGGAGCCAGTGCAGGAGGATTTGAGATGGAAGAAGATGGAACCGGAGTCATGACTGGTGAGTCGGAAGGAGCAGTAGGTGGAGCTGGTGGAGAAGAAGCCGGAGCCATAGCTGGTGGTGAAGTTATGGTGGAAGGAGAGGGAGCAAAGCCGGACGGAGCGAGGGATGAAGATGGAGGAGTGGCCACTGTTGGTGGAGGAGCAGATTTAGGAGAGGAGACTGGCGGCGATTTGGTTGGAGAAGAGGCCGGTGCGGCACCCGGAGCTTGGCCAAGAGAGGCGGCGATTAAAGCTAAGAGAACAACGAAGACGAAGGCTGAGGATGAAGCCATGGTCGTGAAGAAGAATGGGAAGAGCAGAAAGAGGAAGATGGAAGAGAGAAGAGAGAAGTTTGAGCTGAAGAGGTTGAAGATGAGAGAAGAGGAGGGTTCTGCAATTGCTTATACCTATATATAA

mRNA sequence

ATGATAGATCCAGAGACGGCGATTCTGTTCACGGAAGCGCCATTGCCAGGGGTGGAGGTTGGCGACGGAGCCAGTGCAGGAGGATTTGAGATGGAAGAAGATGGAACCGGAGTCATGACTGGTGAGTCGGAAGGAGCAGTAGGTGGAGCTGGTGGAGAAGAAGCCGGAGCCATAGCTGGTGGTGAAGTTATGGTGGAAGGAGAGGGAGCAAAGCCGGACGGAGCGAGGGATGAAGATGGAGGAGTGGCCACTGTTGGTGGAGGAGCAGATTTAGGAGAGGAGACTGGCGGCGATTTGGTTGGAGAAGAGGCCGGTGCGGCACCCGGAGCTTGGCCAAGAGAGGCGGCGATTAAAGCTAAGAGAACAACGAAGACGAAGGCTGAGGATGAAGCCATGGTCGTGAAGAAGAATGGGAAGAGCAGAAAGAGGAAGATGGAAGAGAGAAGAGAGAAGTTTGAGCTGAAGAGGTTGAAGATGAGAGAAGAGGAGGGTTCTGCAATTGCTTATACCTATATATAA

Coding sequence (CDS)

ATGATAGATCCAGAGACGGCGATTCTGTTCACGGAAGCGCCATTGCCAGGGGTGGAGGTTGGCGACGGAGCCAGTGCAGGAGGATTTGAGATGGAAGAAGATGGAACCGGAGTCATGACTGGTGAGTCGGAAGGAGCAGTAGGTGGAGCTGGTGGAGAAGAAGCCGGAGCCATAGCTGGTGGTGAAGTTATGGTGGAAGGAGAGGGAGCAAAGCCGGACGGAGCGAGGGATGAAGATGGAGGAGTGGCCACTGTTGGTGGAGGAGCAGATTTAGGAGAGGAGACTGGCGGCGATTTGGTTGGAGAAGAGGCCGGTGCGGCACCCGGAGCTTGGCCAAGAGAGGCGGCGATTAAAGCTAAGAGAACAACGAAGACGAAGGCTGAGGATGAAGCCATGGTCGTGAAGAAGAATGGGAAGAGCAGAAAGAGGAAGATGGAAGAGAGAAGAGAGAAGTTTGAGCTGAAGAGGTTGAAGATGAGAGAAGAGGAGGGTTCTGCAATTGCTTATACCTATATATAA

Protein sequence

MIDPETAILFTEAPLPGVEVGDGASAGGFEMEEDGTGVMTGESEGAVGGAGGEEAGAIAGGEVMVEGEGAKPDGARDEDGGVATVGGGADLGEETGGDLVGEEAGAAPGAWPREAAIKAKRTTKTKAEDEAMVVKKNGKSRKRKMEERREKFELKRLKMREEEGSAIAYTYI
Homology
BLAST of IVF0020982 vs. ExPASy TrEMBL
Match: A0A0A0LJM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.9e-55
Identity = 127/145 (87.59%), Postives = 137/145 (94.48%), Query Frame = 0

Query: 1   MIDPETAILFTEAPLPGVEVGDGASAGGFEMEEDGTGVMTGESEGAVGGAGGEEAGAIAG 60
           MIDPETAILFT+APLPGV+VGDGASAGGFEMEEDGTGV+ GESEGAVGGAGGEEAGAIAG
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  GEVMVEGEGAKPDGAR-DEDGGVATVGGGADLGEETGGDLVGEEAGAAPGAWPREAAIKA 120
           GEV V+G GA PDGAR ++DGGVATVGGGADLGEE G DLVGEEAGAAPGAWPREAAIKA
Sbjct: 61  GEVAVKGAGATPDGARGEDDGGVATVGGGADLGEEAGDDLVGEEAGAAPGAWPREAAIKA 120

Query: 121 KRTTKTKAEDEAMVVKKNGKSRKRK 145
           KRTTKTKAE+EAMVVKKNGK R+++
Sbjct: 121 KRTTKTKAEEEAMVVKKNGKRREKR 145

BLAST of IVF0020982 vs. ExPASy TrEMBL
Match: A0A6J1C301 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.1e-32
Identity = 100/154 (64.94%), Postives = 106/154 (68.83%), Query Frame = 0

Query: 1   MIDPETAILFTEAPLPGVEVGDGASAGGFEMEEDGTGVMTGESEGAVGGAGGEEAGAIAG 60
           MIDP  A LF  APLPGVE GDGA  GGF +E  G GV  GESEGAVGGAGGEEAGA AG
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  GEVMVEGEGAKPDGARDED----GGVATVGGGADLGEETGGDLVGEEAGAAPGAWPREAA 120
           GEV VEG G  P GA DED    GGVAT  GGA  G++ GG LVGEEAGAAPGAWP+E A
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120

Query: 121 IKAKRTTKTKAEDEAMVVKKNGKSRKRKMEERRE 151
            KA  T  TKAE EAM V KN + R+     R E
Sbjct: 121 TKANSTKNTKAE-EAMAV-KNAQRREENGRRRSE 152

BLAST of IVF0020982 vs. NCBI nr
Match: KGN60236.1 (hypothetical protein Csa_001434 [Cucumis sativus])

HSP 1 Score: 222 bits (566), Expect = 1.73e-71
Identity = 128/142 (90.14%), Postives = 133/142 (93.66%), Query Frame = 0

Query: 1   MIDPETAILFTEAPLPGVEVGDGASAGGFEMEEDGTGVMTGESEGAVGGAGGEEAGAIAG 60
           MIDPETAILFT+APLPGV+VGDGASAGGFEMEEDGTGV+ GESEGAVGGAGGEEAGAIAG
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  GEVMVEGEGAKPDGARDED-GGVATVGGGADLGEETGGDLVGEEAGAAPGAWPREAAIKA 120
           GEV V+G GA PDGAR ED GGVATVGGGADLGEE G DLVGEEAGAAPGAWPREAAIKA
Sbjct: 61  GEVAVKGAGATPDGARGEDDGGVATVGGGADLGEEAGDDLVGEEAGAAPGAWPREAAIKA 120

Query: 121 KRTTKTKAEDEAMVVKKNGKSR 141
           KRTTKTKAE+EAMVVKKNGK R
Sbjct: 121 KRTTKTKAEEEAMVVKKNGKRR 142

BLAST of IVF0020982 vs. NCBI nr
Match: XP_022136125.1 (circumsporozoite protein-like [Momordica charantia])

HSP 1 Score: 148 bits (373), Expect = 5.05e-42
Identity = 96/139 (69.06%), Postives = 100/139 (71.94%), Query Frame = 0

Query: 1   MIDPETAILFTEAPLPGVEVGDGASAGGFEMEEDGTGVMTGESEGAVGGAGGEEAGAIAG 60
           MIDP  A LF  APLPGVE GDGA  GGF +E  G GV  GESEGAVGGAGGEEAGA AG
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  GEVMVEGEGAKPDGARDEDG----GVATVGGGADLGEETGGDLVGEEAGAAPGAWPREAA 120
           GEV VEG G  P GA DEDG    GVAT  GGA  G++ GG LVGEEAGAAPGAWP+E A
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120

Query: 121 IKAKRTTKTKAEDEAMVVK 135
            KA  T  TKAE EAM VK
Sbjct: 121 TKANSTKNTKAE-EAMAVK 138

BLAST of IVF0020982 vs. NCBI nr
Match: KAF5444827.1 (hypothetical protein F2P56_033926 [Juglans regia])

HSP 1 Score: 59.7 bits (143), Expect = 4.65e-08
Identity = 61/113 (53.98%), Postives = 67/113 (59.29%), Query Frame = 0

Query: 3   DPETAILFTEAPLP-GVEVGDGASAGGFEMEEDGT-GVMTGESEGA--VGGAGGEEAGAI 62
           DP   ILFT APLP G  VGD  S GG  +E  GT G + G   G   V GAGGE AGA+
Sbjct: 6   DPVVVILFTAAPLPPGEPVGD--SVGGLPIEVVGTVGELVGTFAGGDDVRGAGGELAGAL 65

Query: 63  AGGEVMVEGEGAKPDGAR-DEDGGVATVGGGADLGEETGGDLVGEEAGAAPGA 110
           AG  V+V G GA+  G    ED GV   GGG  +GEE GGDLV    GAAPGA
Sbjct: 66  AGALVVV-GAGAEAGGDMVGEDVGVKVRGGGEAVGEEAGGDLV----GAAPGA 111

BLAST of IVF0020982 vs. NCBI nr
Match: KAF3435056.1 (hypothetical protein FNV43_RR22143 [Rhamnella rubrinervis])

HSP 1 Score: 50.8 bits (120), Expect = 1.29e-04
Identity = 55/112 (49.11%), Postives = 62/112 (55.36%), Query Frame = 0

Query: 3   DPETAILFTEAPLPGVEVGDGASAGGFEMEEDGTGVMTGESEGAVGGAGGEEA----GAI 62
           DPE A LF  APL     G GAS GG EME DG     GE +   GG GGE A    GA+
Sbjct: 13  DPEIANLFKTAPLSD---GAGASEGGVEME-DGEVAGDGEEDEDGGGDGGEIAVEGDGAV 72

Query: 63  A--GGEVMVEGEGAKPDGARDEDGGVATVGGGADLG---EETGGDLVGEEAG 105
           +  GG V +EG GA+  G    DGG A    GAD G   ++ GGD VGEEAG
Sbjct: 73  SVGGGAVELEGVGAETGGFVPGDGGEAV---GADAGGGVDDDGGDFVGEEAG 117

BLAST of IVF0020982 vs. NCBI nr
Match: XP_023520820.1 (uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 51.2 bits (121), Expect = 4.36e-04
Identity = 38/80 (47.50%), Postives = 42/80 (52.50%), Query Frame = 0

Query: 1  MIDPETAILFTEAPLPGVEVGDGASAGGFEMEEDGTGVMTGESEGAVGGAGGEEAGAIAG 60
          MID ET+ILFT  PLPGVE GDGA                         A GE  GAIA 
Sbjct: 1  MIDLETSILFTAPPLPGVEAGDGAVVE----------------------ARGEIVGAIAS 58

Query: 61 GEVMVEGEGAKPDGARDEDG 80
          GEV ++ EG  P GARD+DG
Sbjct: 61 GEVPIDEEGGTPLGARDKDG 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJM11.9e-5587.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1[more]
A0A6J1C3015.1e-3264.94circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=... [more]
Match NameE-valueIdentityDescription
KGN60236.11.73e-7190.14hypothetical protein Csa_001434 [Cucumis sativus][more]
XP_022136125.15.05e-4269.06circumsporozoite protein-like [Momordica charantia][more]
KAF5444827.14.65e-0853.98hypothetical protein F2P56_033926 [Juglans regia][more]
KAF3435056.11.29e-0449.11hypothetical protein FNV43_RR22143 [Rhamnella rubrinervis][more]
XP_023520820.14.36e-0447.50uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 135..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020982.1IVF0020982.1mRNA