IVF0020968 (gene) Melon (IVF77) v1

Overview


Name	IVF0020968
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L6, putative
Location	chr08: 5421483 .. 5424608 (+)
RNA-Seq Expression	IVF0020968
Synteny	IVF0020968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCGTAATTCGCCGCACGCCCCTTTTCTTCAATCTTCAGTTCAGCTTCCTCCCCGTCGGCCGACCATTTCTTCGCTCGCCCTTCAAGCCGGCCGCCCCCCCTCCGCCGGTGTCCAGTTGCCCTCTTCGACACTGTTCGTCCTTCATCATTTTTTCCGCCTTCCCTGTTGTCCTCCTTCCCGCCAACACTTTGGATTTGGTGTTGAATTTGTTTTCTGACTGCACTTAGGTGAGTTAAACATTTTGAATTCGCTGAATCTGCTGAATTTGATTTCGTTGAATTTGTGTTGTTGAAATTGTTCAGTTAAATAAAATTTTGGTTTAACTTCAAAAGCCTTGCTTGGATCCCAACACAATTAAGTTTCAGTAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTGACATCTTAAAATATATACCAAACAAGTCCTAAAAAAGTTATTTGGTATGTTTAATAATTTTATGTATTGTCTGAAATCTCAACTTTAGTTTCAATATACTCAAATTCTCGAGACATGAATTGTAACTTGTCACGAACTATTGTTTGAATGGCTCTATTGTTCAAGCAGCTTCTTTACTTTGTCTGAATGTGATGTGATTTCAATAACCATAGTATTCATCTTTGCATTTTGATGTCTTTTTCTTTTTATCCCGGTAAAGTTCTATCTTTTATTGGTGTTGCCCGAGGTGGTAAGCTTATTACATTCATCTTCTTCTATGATCCTTCGCCATTGTTCTCCCTATATTATAGCTATACTATACGTATATCAGTAAAGATACTATTTTCTGAGTTTTGTATTTCAATCTTAATATTGAAGCTTCAGTTACCAAATCTCCCTTTGCAATTGAGTTTTAAATTTTATATCATAATTAAAGTCTAAACTTTACCTTGTTCCTGTGTTTTTTCCCACCACTATTTTCCCCATTTTTGAGTGAGGTTCAATCTTAATCTTGGAGCTTCATCTACCCAGTGCTTCTAAAGTTCAAGGTGCAATAAAGCTCATCAGTCCTAGGAAAAAAAAAAAAGGAAAAAAGAAAAAAAAGAAGCAAAAGCTCAGATTGTTGTTTGTTAGGCTGACTATGTAATACTACGTAAAGAAAAGAAATCATAATTGAAGCAGACATGAAACAAAACCCCTAAACATAAGGGATTTTGATTTCAAGTTTAGTAAATTTGATTCTTTTAGTTAATAAGGAAGGAAAAGCTCTAGTTATTTTACTAGTTTTCAAAAACAATTAAAAAGGTTCAAGGGCTAAGGCTTCGAGCCTTGGGGCTTCACAAAAGGTGCACCTTACTTTTTTAAACATAGCATCTACCACAGGCTCTCTTACCAAAGCTCAATAAGGGCCATAGGTATAATACAAAACTTGGAGGGAATGAATTTATCTGATGGTGGTCTCCTATCTAGAACTTAATAATGTACGAGTTTCCTTGGTGTCCATATGTTGTAGTTAGAGGTAAAAGAGGTTATTTTGTAAGCTTGGTCAAGGTGTGCAAGCAAGTTGGTTAGGGCACTAACAAATAGAAAAATGTATTTGTTTACTTGTGCCGTGGGGAGGTTTCAAGGGGTGATTTGGCATCCATATCGTGTAGGGTAAAGGGGTTGTCTTGTAAGATTAGTCAAGGCATGCAAGCAAAGTTGGTTGGTAAGGATACCTGGGAAGGTGTTGATGAGCTTTATGGCAGCACCTAGAGGACCTTCAGAGGGTGATAGGTGGATCAGATGGCTCAACATTGTCTTCTTTCTCATCAGGTTATCTCAATTTTGTCCATATGGGATCAAGATAATAGGGTGACATGGGGATGAGGAATGACTGACGGGATGATGGATTATCTTGATTGTTACTTTTATCTCTTTATACTTTAGATTCACTATGCTAAATTTATCTCAACCTAATAATTTGACTTTGAAGTATGGTGGACATTTTATGTGATGAAAGATTCGCGGGCTGAGTGGTTCCAGGTTTTGGAATCTCTCGAGTTAGATCGATATAATTTTATAGGTTTGGTTTATAAATTCAATCCACTCGATGCTAACTAGTAACTATCATATCAGGGTTTTTTTAAGTACATAATCATATCAGGTTTTGAACCAATGATCTCGTGAGATTTCAAAGTAATTGAAACTACTTGCTGCCCGTTCTTCTTGGGTCACCAAATTATAATTGGTAATTTATTTTCGAAGTTCATTTCCAATCCAATGACAGTTTTAATGTGTTCATACAAGCCCATTGACAATGAACGCTGCTGCTTGTTTAGTGTTAACCATTCCTATTTCGTCTGTTTCCAACAAATATTAAATATGATCTATTAAATATCAGTAAACTAACTAGTTTGTGAATTTCATCTTAATAGGTAAGCAGGAACTATAATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAGCTAACCGTTCCACCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAATATAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATATCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAAGATAACAGAAGCACAAAATCCCTCGTTGATCTTTATTCAGACACAAAGTGCCTCAGTTATGAATAATTGTTTTTGTTGTATGCATGTTTTTAGAGCATTCCATGAATTTAGCCATGCGACTGAACTGTAATTGCTTCAATGCCTATTCTTGAAATGTCATCTCATCGGTCATTGATGTTGAATGTTGAAGAATGCAGACCATGCAAGAAAAGGCTATTTGAGTTGAGCGTTGTCGACCATTAACCTTTTTCTTTTTCTTTTCATGTGGGATGGAGCCTCTGACCACGTTGATCATTGAGGTTCAACTCTCATACACTTGCTTGTATTATGAGTAGTAATGCCCTCTTTTCTTTGCAAGATGTTTATGCCAATTTTCTCACGGACCTTGATTAAAGTTTCAAACAAAACAGCC

mRNA sequence

TTTTCGTAATTCGCCGCACGCCCCTTTTCTTCAATCTTCAGTTCAGCTTCCTCCCCGTCGGCCGACCATTTCTTCGCTCGCCCTTCAAGCCGGCCGCCCCCCCTCCGCCGGTGTCCAGTTGCCCTCTTCGACACTGTTCGTCCTTCATCATTTTTTCCGCCTTCCCTGTTGTCCTCCTTCCCGCCAACACTTTGGATTTGGTGTTGAATTTGTTTTCTGACTGCACTTAGGTAAGCAGGAACTATAATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAGCTAACCGTTCCACCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAATATAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATATCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAAGATAACAGAAGCACAAAATCCCTCGTTGATCTTTATTCAGACACAAAGTGCCTCAGTTATGAATAATTGTTTTTGTTGTATGCATGTTTTTAGAGCATTCCATGAATTTAGCCATGCGACTGAACTGTAATTGCTTCAATGCCTATTCTTGAAATGTCATCTCATCGGTCATTGATGTTGAATGTTGAAGAATGCAGACCATGCAAGAAAAGGCTATTTGAGTTGAGCGTTGTCGACCATTAACCTTTTTCTTTTTCTTTTCATGTGGGATGGAGCCTCTGACCACGTTGATCATTGAGGTTCAACTCTCATACACTTGCTTGTATTATGAGTAGTAATGCCCTCTTTTCTTTGCAAGATGTTTATGCCAATTTTCTCACGGACCTTGATTAAAGTTTCAAACAAAACAGCC

Coding sequence (CDS)

ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAGCTAACCGTTCCACCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAATATAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATATCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAA

Protein sequence

MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK

Homology

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BLAST of IVF0020968 vs. ExPASy Swiss-Prot
Match: P26861 (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL6 PE=3 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 4.8e-35
Identity = 68/100 (68.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N++CCTG+
Sbjct: 1   MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGM 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK 101
           D  +V QFAA V+SCKPPEVYKGKGI Y +E+I +KQGKK
Sbjct: 61  DHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKK 100

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BLAST of IVF0020968 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 8.2e-19
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F + L++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  V  +G DK  
Sbjct: 123 FEKKLQLVGVGYRATVE--GKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSV 182

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           V QFAA +RS +PPE YKGKG+ Y+DEV++RK+GK  K
Sbjct: 183 VGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGK 218

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BLAST of IVF0020968 vs. ExPASy Swiss-Prot
Match: Q2JQN4 (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rplF PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GIDK  
Sbjct: 83  FERRLELVGVGY--RASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKEL 142

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           V   AA +R+ +PPE YKGKGI Y+ E ++RK GK  K
Sbjct: 143 VGNTAARIRAVRPPEPYKGKGIRYVGEQVRRKAGKSGK 178

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BLAST of IVF0020968 vs. ExPASy Swiss-Prot
Match: B2IK77 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712) OX=395963 GN=rplF PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-18
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K   V  TGIDK R
Sbjct: 83  FERKLEITGVGYKAAVQ--GKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQR 142

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK 101
           V Q AA +R+ +PPE YKGKG+ Y  E I RK+GKK
Sbjct: 143 VGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKK 176

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BLAST of IVF0020968 vs. ExPASy Swiss-Prot
Match: Q38US6 (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=rplF PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-18
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  +  +GI K +
Sbjct: 82  FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQK 141

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           V QFAA +R  +PPE YKGKGI Y DE ++RK+GK  K
Sbjct: 142 VGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGKTGK 177

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BLAST of IVF0020968 vs. ExPASy TrEMBL
Match: A0A5D3CL55 (60S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002100 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.4e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK
Sbjct: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102

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BLAST of IVF0020968 vs. ExPASy TrEMBL
Match: A0A1S3B2D0 (60S ribosomal protein L6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485047 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.4e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK
Sbjct: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. ExPASy TrEMBL
Match: A0A0A0KJ40 (Ribosomal_L6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502670 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.1e-50
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMY+DEVIKRKQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. ExPASy TrEMBL
Match: A0A6J1IQJ4 (uncharacterized protein LOC111478518 OS=Cucurbita maxima OX=3661 GN=LOC111478518 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMYIDEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. ExPASy TrEMBL
Match: A0A6J1GFP3 (uncharacterized protein LOC111453510 OS=Cucurbita moschata OX=3662 GN=LOC111453510 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMYIDEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. NCBI nr
Match: XP_008440709.1 (PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo] >KAA0036229.1 60S ribosomal protein L6 [Cucumis melo var. makuwa] >TYK12623.1 60S ribosomal protein L6 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 2.55e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102
           DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK
Sbjct: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. NCBI nr
Match: XP_004143514.1 (uncharacterized protein LOC101220210 [Cucumis sativus] >XP_031743651.1 uncharacterized protein LOC101220210 [Cucumis sativus] >KGN48829.1 hypothetical protein Csa_003933 [Cucumis sativus])

HSP 1 Score: 206 bits (524), Expect = 6.02e-67
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102
           DK RVHQFAAAVRSCKPPEVYKGKGIMY+DEVIKRKQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. NCBI nr
Match: XP_022950399.1 (uncharacterized protein LOC111453510 [Cucurbita moschata] >XP_022978580.1 uncharacterized protein LOC111478518 [Cucurbita maxima] >XP_023543123.1 uncharacterized protein LOC111803085 [Cucurbita pepo subsp. pepo] >XP_038881955.1 60S ribosomal protein L6, mitochondrial [Benincasa hispida] >XP_038881956.1 60S ribosomal protein L6, mitochondrial [Benincasa hispida] >XP_038881957.1 60S ribosomal protein L6, mitochondrial [Benincasa hispida] >XP_038881958.1 60S ribosomal protein L6, mitochondrial [Benincasa hispida] >KAG7034145.1 60S ribosomal protein L6, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205 bits (522), Expect = 1.22e-66
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102
           DK RVHQFAAAVRSCKPPEVYKGKGIMYIDEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. NCBI nr
Match: XP_019059560.1 (PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana] >XP_019059561.1 PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana] >XP_019059562.1 PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana] >XP_019059563.1 PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana])

HSP 1 Score: 203 bits (516), Expect = 1.00e-65
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102
           DK+RVHQFAA VRSCKPPEVYKGKGIMYIDEVIK+KQGKKSK
Sbjct: 61  DKHRVHQFAATVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. NCBI nr
Match: PON38569.1 (Ribosomal protein [Parasponia andersonii] >PON82808.1 Ribosomal protein [Trema orientale])

HSP 1 Score: 202 bits (515), Expect = 1.42e-65
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAQFFRFLKIVGVGYKARAESAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102
           DK RVHQFAAAVRSCKPPEVYKGKGIMYIDEVIK+KQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 7.0e-50
Identity = 93/102 (91.18%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           DK RVHQFAA VRSCKPPE YKGKGIMY DEV+K+KQGKKSK
Sbjct: 61  DKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

[Close]

BLAST of IVF0020968 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 90.5 bits (223), Expect = 8.4e-19
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G DK  
Sbjct: 126 FEKKLILVGVGYRATVD--GKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 185

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 103
           + QFAA VR  +PPE YKGKG+ Y DE+++RK+GK  K
Sbjct: 186 IGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGK 221

The following BLAST results are available for this feature:

BLAST of IVF0020968 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26861	4.8e-35	68.00	60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL6...	[more]
P82193	8.2e-19	48.98	50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=...	[more]
Q2JQN4	1.1e-18	48.98	50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rpl...	[more]
B2IK77	3.1e-18	50.00	50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 ...	[more]
Q38US6	4.1e-18	47.96	50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) OX=314...	[more]

BLAST of IVF0020968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CL55	6.4e-51	100.00	60S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B2D0	6.4e-51	100.00	60S ribosomal protein L6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485047 ...	[more]
A0A0A0KJ40	7.1e-50	98.04	Ribosomal_L6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G50267...	[more]
A0A6J1IQJ4	1.2e-49	98.04	uncharacterized protein LOC111478518 OS=Cucurbita maxima OX=3661 GN=LOC111478518...	[more]
A0A6J1GFP3	1.2e-49	98.04	uncharacterized protein LOC111453510 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]

BLAST of IVF0020968 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440709.1	2.55e-68	100.00	PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo] >KAA0036229.1 ...	[more]
XP_004143514.1	6.02e-67	98.04	uncharacterized protein LOC101220210 [Cucumis sativus] >XP_031743651.1 uncharact...	[more]
XP_022950399.1	1.22e-66	98.04	uncharacterized protein LOC111453510 [Cucurbita moschata] >XP_022978580.1 unchar...	[more]
XP_019059560.1	1.00e-65	96.08	PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana] >XP_01905...	[more]
PON38569.1	1.42e-65	96.08	Ribosomal protein [Parasponia andersonii] >PON82808.1 Ribosomal protein [Trema o...	[more]

BLAST of IVF0020968 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18400.1	7.0e-50	91.18	ribosomal protein L6 family protein	[more]
AT1G05190.1	8.4e-19	44.90	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 65..86 score: 56.45 coord: 23..39 score: 44.97
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 5..102 e-value: 8.7E-34 score: 117.5
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 5..100
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 12..88 e-value: 3.5E-16 score: 59.6
None	No IPR available	PANTHER	PTHR11655:SF17	RIBOSOMAL PROTEIN L6-RELATED	coord: 1..101
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..101
IPR002358	Ribosomal protein L6, conserved site	PROSITE	PS00525	RIBOSOMAL_L6_1	coord: 78..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020968.1	IVF0020968.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome