IVF0020888 (gene) Melon (IVF77) v1

Overview
NameIVF0020888
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 19083210 .. 19083392 (+)
RNA-Seq ExpressionIVF0020888
SyntenyIVF0020888
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAATCTCATTTGCTCCTACTAGAAATTGGATCGCTGACGGTGAAGCAGAACGAAAATGCCCCATCGTTCCAACTAGGAGTTGGATATGACAGCAAAAGCTCGATCACCCCTAATAAAAATTTGATCGTTGACAGTGAGGCAGAACAAAGATGTCTGATCGTTCCTACTACGCTTTAG

mRNA sequence

ATGGCAAAATCTCATTTGCTCCTACTAGAAATTGGATCGCTGACGGTGAAGCAGAACGAAAATGCCCCATCGTTCCAACTAGGAGTTGGATATGACAGCAAAAGCTCGATCACCCCTAATAAAAATTTGATCGTTGACAGTGAGGCAGAACAAAGATGTCTGATCGTTCCTACTACGCTTTAG

Coding sequence (CDS)

ATGGCAAAATCTCATTTGCTCCTACTAGAAATTGGATCGCTGACGGTGAAGCAGAACGAAAATGCCCCATCGTTCCAACTAGGAGTTGGATATGACAGCAAAAGCTCGATCACCCCTAATAAAAATTTGATCGTTGACAGTGAGGCAGAACAAAGATGTCTGATCGTTCCTACTACGCTTTAG

Protein sequence

MAKSHLLLLEIGSLTVKQNENAPSFQLGVGYDSKSSITPNKNLIVDSEAEQRCLIVPTTL
Homology
BLAST of IVF0020888 vs. ExPASy TrEMBL
Match: A0A5A7UI85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00110 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 2   AKSHLLLLEIGSLTVKQNENAPSFQLGVGYDSKSSITPNKNLIVDSEAE 51
           AK   L +EIGS T KQNE+A S  LGVG+D KSSI P++N I D EAE
Sbjct: 117 AKVRSLPVEIGSQTAKQNEDAQSLLLGVGFDGKSSIAPSRNQITDGEAE 165

BLAST of IVF0020888 vs. NCBI nr
Match: KAA0055593.1 (uncharacterized protein E6C27_scaffold222G00750 [Cucumis melo var. makuwa] >TYK01332.1 uncharacterized protein E5676_scaffold29G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.65e-08
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 2   AKSHLLLLEIGSLTVKQNENAPSFQLGVGYDSKSSITPNKNLIVDSEAE 50
           AK   L +EIGS T KQNE+A S  LGVG+D KSSI P++N I D EAE
Sbjct: 117 AKVRSLPVEIGSQTAKQNEDAQSLLLGVGFDGKSSIAPSRNQITDGEAE 165

BLAST of IVF0020888 vs. NCBI nr
Match: KAA0065775.1 (hypothetical protein E6C27_scaffold37G00680 [Cucumis melo var. makuwa] >TYJ96515.1 hypothetical protein E5676_scaffold546G001640 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 9.54e-06
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 3   KSHLLLLEIGSLTVKQNENAPSFQLGVGYDSKSSITPNKNLIVDSEAEQ 51
           K  L L+EIGSLT KQNE+  SF  GVG+D KSSI+ N+N I   +  +
Sbjct: 52  KVQLSLVEIGSLTAKQNEDIRSFLPGVGFDDKSSISHNRNQIAKGKENE 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UI851.1e-0561.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0055593.11.65e-0861.22uncharacterized protein E6C27_scaffold222G00750 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0065775.19.54e-0653.06hypothetical protein E6C27_scaffold37G00680 [Cucumis melo var. makuwa] >TYJ96515... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020888.1IVF0020888.1mRNA