IVF0020866 (gene) Melon (IVF77) v1

Overview
NameIVF0020866
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 21806359 .. 21806650 (+)
RNA-Seq ExpressionIVF0020866
SyntenyIVF0020866
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAACCTAACACTACAAGAAATTGGGGCTTTCCTGACGCCAAAAAGGATATCGGCACAAAGAACGTTGGGAATAAGGATATTCCCAATACCGGATAGACGAGTCGTGAAAGCCGCATTGGAGAAAATCCTATTCCCGATGCCACGCACAATGTGTCGGGAGTGGCGTCGAGAAAAAGGGTATTCCCAATGTGTCAAGCACGCGTCGACCAAACGACGTCGAGAATAAGGCCAAATTAAATTTAAAATACACCTTATTCTCGACGCCATGCACATTGCATCGGGAATAA

mRNA sequence

ATGGACAACCTAACACTACAAGAAATTGGGGCTTTCCTGACGCCAAAAAGGATATCGGCACAAAGAACGTTGGGAATAAGGATATTCCCAATACCGGATAGACGAGTCGTGAAAGCCGCATTGGAGAAAATCCTATTCCCGATGCCACGCACAATGTGTCGGGAGTGGCGTCGAGAAAAAGGGTATTCCCAATGTAATAAGGCCAAATTAAATTTAAAATACACCTTATTCTCGACGCCATGCACATTGCATCGGGAATAA

Coding sequence (CDS)

ATGGACAACCTAACACTACAAGAAATTGGGGCTTTCCTGACGCCAAAAAGGATATCGGCACAAAGAACGTTGGGAATAAGGATATTCCCAATACCGGATAGACGAGTCGTGAAAGCCGCATTGGAGAAAATCCTATTCCCGATGCCACGCACAATGTGTCGGGAGTGGCGTCGAGAAAAAGGGTATTCCCAATGTAATAAGGCCAAATTAAATTTAAAATACACCTTATTCTCGACGCCATGCACATTGCATCGGGAATAA

Protein sequence

MDNLTLQEIGAFLTPKRISAQRTLGIRIFPIPDRRVVKAALEKILFPMPRTMCREWRREKGYSQCNKAKLNLKYTLFSTPCTLHRE
Homology
[Close]
BLAST of IVF0020866 vs. NCBI nr
Match: KAA0045128.1 (uncharacterized protein E6C27_scaffold30G001270 [Cucumis melo var. makuwa] >TYK23609.1 uncharacterized protein E5676_scaffold500G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 8.93e-05
Identity = 32/75 (42.67%), Postives = 38/75 (50.67%), Query Frame = 0 

Query: 18 ISAQRTLGIRIFPIPDRRVVKAALEKILFPMPRTMCREWRREKGYSQCNK---------- 77
          +S QRT G+R+F                    RTM REW R+KGYS+  K          
Sbjct: 1  MSTQRTSGMRVFLTS-----------------RTMRREWHRKKGYSRRVKRPSAKWRREW 58

Query: 78 AKLNLKYTLFSTPCT 82
          A+LNLKYTLF TPCT
Sbjct: 61 AQLNLKYTLFPTPCT 58

[Close]
BLAST of IVF0020866 vs. NCBI nr
Match: KAA0054290.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK12327.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.5 bits (114), Expect = 3.19e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 24 LGIRIFPIPDRRVVKAALEKILFPMPRTMCREWR-REKGYSQCNKAK 69
          LGIR+FP+PD+R VKAA EK LF  PR M RE + + KG  +  K +
Sbjct: 2  LGIRVFPMPDKRAVKAASEKTLFSTPRIMLRERQLKTKGKGRREKQR 48

The following BLAST results are available for this feature:
BLAST of IVF0020866 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0020866 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0020866 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045128.18.93e-0542.67uncharacterized protein E6C27_scaffold30G001270 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0054290.13.19e-0453.19CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK12327.1 CACTA en-... [more]
BLAST of IVF0020866 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020866.1IVF0020866.1mRNA