IVF0020857 (gene) Melon (IVF77) v1

Overview


Name	IVF0020857
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	rRNA-processing protein FCF1 homolog
Location	chr04: 27487987 .. 27493078 (+)
RNA-Seq Expression	IVF0020857
Synteny	IVF0020857

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAAAACCCTAACCTCCATCATCGTCCTCTACTCTCACGTGCTCCACCACACGTCCTTCTTCTTCTTCACTCCGTCTCTTCCTCCCTTTCAGCAGCACATTGTCGCCGCCCCCTCTCTCCCGTTCAGTGCTACTGCCGCCGTTTCCGTTGCCGTCTTTTCTCTGCTCGTGTCGTCCCAGCCTCTCTGGAACAGGTTTACCCTGATTTCCTAATCTTTGGTCTATTGATTTGTTGTCTATGTCTTTCTATAAAGGCTTTGATAATCTGAACGTCTCTTATGTTTCTGCTGGAAATTGCCTTGTTTCTCCGACCATGAATTTTTCTAGCATCTCCCTTCTTTATTTATCAGAGGACTAGTCTGAGTAATCTATCCTCTTATGAAATTCTCTTTTAATCCTAACTTGTTGAGGAATTTTGATTTACCAAACAACTTCACCCTTGTTTATACTTGTATTATCATTGGAGTGAAGGGCTTGTTTTTTCTTTTTGTTGAAGTTATAGAAAATATTCTGGTAAAATGGACATATGTTGAAAGGATTTAATGTAAGTTTCATGGAAATATTATGAAGGAACAAAAAAAGTTTTGATGGAGAAATTGAGTACATGGGTAATGTAGGAGCCATCTCTATTCCCCCCCAGGAATCCTTAGAGTTACCACTGTTTAGGTTCGGTCTCCTCTTTGAAACAAGGGATGCATCTGTTGGGTGCTTGAAACAATTTATTACTTTTTCGTCAATACTTTTATATTTGAACTCAAAATGTCATGTGTTAACATGTGTGGTATGCACGAGTTATGTGGAAAATGGTGCAAATATATTACTTTTTGATTGTGCTGTTGAGATTTTGGTATTCATATAAATGATTAAGTTGTTTCCTCGTTACCAATGTAGCAGATAGTGAGCAAGTCCTCTTCTAAACTTTAAAGCATTGAAATTGCACCCGAGTAAGCGAGAGAATTTAGACAGCCATTTGGTGGCACAACTTCAATTTTTTTTCTTTCAATCAACGAGATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCATGAAGAAGCTGGTCACCTCTAAAGCCATTAAAAAGTATGCCTTCTGTTGTTTCTTTTCGATCTCAGCTTTATCTACCTTTTTAAAAATCTTTTTTGCTTATGTTTATGTTTTTTGCTACTCATCTTAGCTACAAGCAAGAGGTCTTGAATCCAAAAAGAAAAGATCTTACGAAAGAAAACCTTCCAAGAAATGTGTAAGGAACTTCTTGAGCTGACTATTTTCTAATTTATCTTTCCGTAACAAATTAACAGTTTCTAACTTTGTTGTCTGGGCATAAGATTTGTTTTCTACTGTTGGTGTTGTCTGTGACAAATACATACTTATATTTCTGTTAATTCAGTCCAAATGTTCCTTCGGCACTTTTCTTCAAGCACAACACTGCATTGGGCCACCTTATCGGGTCTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAACAAAGTGAGTGCTTTACAATTTTAATGAGAATATAGTATATTATCACTGTGTGATTTCTATGGAAATGCGAAGTCCATTTTATTATGAATATTTTTGTGGATAATTTGAAATATATATGTAATTTATTTGTAAACTGGTGGAGTTTCTCTTGTCAAATTTCATAATGATGAGAAAGCACTACATCATGCAGGTAAATTAAGGATAAAATTTCTTTCTACTTGATGATTGAAGTGGTTTATTCTCTCCTTTTTAATTGCAGTTGGACTTGGAGAAGGGAATGATGGACTGTCTATATGCTAAATGTAAGTCGTACATTGACAGGAAATGTATTAGAATTCAATATTCGAGAAGTGGTATTCTTTGTGGACATGGATGCTTATTTGTGATCATGTTTTAGGCACTCCTTGTATAACAGACTGCGTGATGGCTGAGCTTGAGCGATTAGGTCAGAAGTATCGTGTTGCTCTTAGGTAAATTTATGTTTCATTTGTCTATTAGAAGATGAATTATCTATGCTCCCATTTTCTGGTACTATACCTATGTAAGTTCACGTTCAGAATCTTCTGGAGTTGGTTGACATTGTGCAGTATGCACGAGTTTGTATTTTTCTCTTCATGTCCATCTTCAATTTGTTGTTGTTTGGGGGGGGGGGGGGGGGGGTGGGGGAATTCAACAACATCAAATAATCGATTAAAGGTTATGAAAATTTTAGTATTTGGATTGGAAAGAAATAATATAAGCTTTTAATTTAATTTCATGGGGTATGACTCCACAATACCATATTCTTGGTTTTTCCTTGGTGTTCTCTTTCTTGTTACTTCTTTAAATCTGTATATTTTTTTGAAGACTACTGCTTGTTTCATTCTTTTGTATCTTTCAAGTTGGTATTGTTTACTATTTTTTGGGCTTGAGCAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGACGATTGCCTTGTTGAAAGGGTGACTCAGGTGAGAACTGAAGGATTCTTGCATATTATGATGTTCGTTGACCACAGTTGTTCCAATTTCATATTTAATTTCGTTTTAGATGGTTGACATTCTTAATACTTAACAGATGATATATATTCCTTATTTCTTATATGTAAGGAAAGTTGGGGGCAACTTGTAATTTTGGAAGTGTTCTATTCGTAGCTTTGTTTACTTAATTTTTCTTCTATATATGCTTGAATCTGGGTCATAGATCACTTTTTTTAACGGATATGAGCCTCTTTCTTAAATGTATTAATAAAAGAGACTAATCCTCAAAATACATGAGAATTAGGCTAAGAGTGAAAAGAGGGAGCACAAATAAAAGTACAGACGAATTGAACAAACAAAAGCAACATAAGCGAAACCCCAAGCAAAACAGAAGAAAAATAAGAACAAAGAAAACTTAAAAAAATTTCCACTAGAAGCCCAAAAACAGCTGAAGATTGCAGACTAAAAACTTCAAAATGGATTGGAGAACACCAAGAGAGCAAATTGCCAAACAGCTTGTTGAAAAAATATGCCTCCTAAGTAGTTCTTAAATCTTTGAGTGAGTGACTAGAACCAATATTCGGGAAGAACTTTAGAGGGCCAAAATAATAGAAGCATCCGTCAAATGACTCAAATCTCTCATGATCCACTAACATAGCTCATACCAAAATAATTCCACATTTCTCAACAATGGACTTCAAGTGATATGGAATCTCACAGTGCTGAGCTTGTGAAGGAAATGATCCTCGTCTATCTGAAACAAGGTATTGAGATCAGATTCTAAAGGATCCTTAATTGACTGGTCATCCTTCTCCGCTGTCTTTATGTTCGGCTTCCTCGCTGCTCACTTCAGATACTGAAACTATTTTTCCACAGTAATTTTCAATATGATGGATATGTGGGAAACTTACATGGGCCAGTTGTCAGTATTTGCACACGTTGTAGTCACCGTAGCATGTGAATCCTGGTTAGAAAAAGGGGAAAGTTAAAAATGTTTTTCCACCATTAAATATAGAATAATACACTGTAAACTAGTTTAAATCCTAGTTATCTTCTTACTGCTGATATTCATAAAGAAAGTAGCAGATATTTAATTACTAGGCTTATGGTACGGTTTATTATATTTGTACATATCTAACAAGGATAAAAAAACAATGTATTAAGTTTTTGGAGGAATGGGGGACCAAGCTCTCACATTCTATTAGATAAATACTATTAAAAGAAAAGGATGTATGTGTTGTAAAGTTGAAGTAGAGATAGTGGCCTACATCCTGCCTTTTCACCCTTTTTTATTATTTTATTATTTTTAACAGAAGCTTTCTTTTTGTGCAGCATAAGTGTTATATCGTTGCTACTTGCGATAGAGATTTGAAGCGTAGGATTCGCAAGGTATGATCAGATCACAATAGTTGGGAACACACAATGTTGGATTTAGATGTAGTAACTCGCCTATTTTCTTGCAGATTCCTGGCGTACCCATCATGTATATAACTCGGCATCAGTATTCGATTGAGCGGTTGCCTGAGGCAACAATTGGAGGAGGTAGGCTACAACATGTCTAATCCATATAAACAATTTTATTTTAGTTCTTGTTAGGTCATTGGATTGAATTCATAAAAGGTCCTTCGGTGGTGAAAATGAATGAACACTTTGATAGAGCATAAGAATGTTACCACCATCTTTTTGTTCATGATGCTTTCCATGAGATATACTTCTAGGGAAGCATTTGGTCTTTCGACATGTTACAGAAAGCACCTTACTTTTGTCCATCTTCCATTTTAGTGGGATATTGTGGCCTTGGTATCTCCAAGCTTAGTGAAGAAAGCTGGAATTTCTTGGCAATAGGTTTATTTAACTAAATGACACTTGGAAAGGGGGAAACCAGATTATGGTTTCTAGAGTAAGTTGATGGCATGGGAGAAGTTACAGTCTCTCTTTGGGTTTCTATTGCCAAAACTTCTCACCTAGTGAGTTTTGTGGGGACGTTGGAGAGGAATAATAAGATGTGTTGATAGGGTTTCAAAGATGTTCGTATTTTGGTAGATTCTATGTGATGAAATAATTGGAGAGAGCATCTTTTTTAGTTTCTTTAGTTAGCTCCCTTTTTGTGGGCTTGTAGTGTTATATTCTTTCATTCTGAACAAAACTTAGATCAAATAATTGATCATATTACATGAGTATTTATTATTTTTAACATTTCAACTATTAAGTACATTCTTTTGAAATTTTCAAAAGTAAGAATCCCCATGAAAATTATTTTGAGTTAATAATATTTTGGACATCTGTTTTAATTTTAAATTTATTGTGAATGCAGCTCCAAGGATGTAATTGTGGGACTTCACAGTGATGGACAAAAAAAAAATTCTTGAAGAGGTTTTTCCCCTGACTTCCAACCAACCTTTCCCAAGAGAAATTAAATTAAAAGAAATATTAGTAGGCATTGGTATCATGTAAATTTCTTTTGGCTTTAGGATATATTTCTTTTTGTTGTCCCTCATTTCTACAATTATTTGATTTTCTTTTTACGTCTAGTTTATGTACCCTCTAAAGAAGAAAAAAAAATGCTTCTCCCTACTTCTGGGTTGTTGAG

mRNA sequence

GACAAAACCCTAACCTCCATCATCGTCCTCTACTCTCACGTGCTCCACCACACGTCCTTCTTCTTCTTCACTCCGTCTCTTCCTCCCTTTCAGCAGCACATTGTCGCCGCCCCCTCTCTCCCGTTCAGTGCTACTGCCGCCGTTTCCGTTGCCGTCTTTTCTCTGCTCGTGTCGTCCCAGCCTCTCTGGAACAGATAGTGAGCAAGTCCTCTTCTAAACTTTAAAGCATTGAAATTGCACCCGAGTAAGCGAGAGAATTTAGACAGCCATTTGGTGGCACAACTTCAATTTTTTTTCTTTCAATCAACGAGATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCATGAAGAAGCTGGTCACCTCTAAAGCCATTAAAAACTACAAGCAAGAGGTCTTGAATCCAAAAAGAAAAGATCTTACGAAAGAAAACCTTCCAAGAAATGTTCCAAATGTTCCTTCGGCACTTTTCTTCAAGCACAACACTGCATTGGGCCACCTTATCGGGTCTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAACAAATTGGACTTGGAGAAGGGAATGATGGACTGTCTATATGCTAAATGCACTCCTTGTATAACAGACTGCGTGATGGCTGAGCTTGAGCGATTAGGTCAGAAGTATCGTGTTGCTCTTAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGACGATTGCCTTGTTGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCTACTTGCGATAGAGATTTGAAGCGTAGGATTCGCAAGATTCCTGGCGTACCCATCATGTATATAACTCGGCATCAGTATTCGATTGAGCGGTTGCCTGAGGCAACAATTGGAGGAGCTCCAAGGATGTAATTGTGGGACTTCACAGTGATGGACAAAAAAAAAATTCTTGAAGAGGTTTTTCCCCTGACTTCCAACCAACCTTTCCCAAGAGAAATTAAATTAAAAGAAATATTAGTAGGCATTGGTATCATGTAAATTTCTTTTGGCTTTAGGATATATTTCTTTTTGTTGTCCCTCATTTCTACAATTATTTGATTTTCTTTTTACGTCTAGTTTATGTACCCTCTAAAGAAGAAAAAAAAATGCTTCTCCCTACTTCTGGGTTGTTGAG

Coding sequence (CDS)

ATGTTCCAAATGTTCCTTCGGCACTTTTCTTCAAGCACAACACTGCATTGGGCCACCTTATCGGGTCTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAACAAATTGGACTTGGAGAAGGGAATGATGGACTGTCTATATGCTAAATGCACTCCTTGTATAACAGACTGCGTGATGGCTGAGCTTGAGCGATTAGGTCAGAAGTATCGTGTTGCTCTTAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGACGATTGCCTTGTTGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCTACTTGCGATAGAGATTTGAAGCGTAGGATTCGCAAGATTCCTGGCGTACCCATCATGTATATAACTCGGCATCAGTATTCGATTGAGCGGTTGCCTGAGGCAACAATTGGAGGAGCTCCAAGGATGTAA

Protein sequence

MFQMFLRHFSSSTTLHWATLSGLGGYKFHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATIGGAPRM

Homology

[Close]

BLAST of IVF0020857 vs. ExPASy Swiss-Prot
Match: Q32PD0 (rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.1e-55
Identity = 101/125 (80.80%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F    KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVALRIAKDPRFERLPC
Sbjct: 75  FINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPC 134

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+ H+Y+IER+P+   
Sbjct: 135 THKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY- 194

Query: 148 GGAPR 153
            GAPR
Sbjct: 195 -GAPR 197

[Close]

BLAST of IVF0020857 vs. ExPASy Swiss-Prot
Match: Q9Y324 (rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.1e-55
Identity = 101/125 (80.80%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F    KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVALRIAKDPRFERLPC
Sbjct: 75  FINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPC 134

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+ H+Y+IER+P+   
Sbjct: 135 THKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY- 194

Query: 148 GGAPR 153
            GAPR
Sbjct: 195 -GAPR 197

[Close]

BLAST of IVF0020857 vs. ExPASy Swiss-Prot
Match: Q5RFQ0 (rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.1e-55
Identity = 101/125 (80.80%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F    KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVALRIAKDPRFERLPC
Sbjct: 75  FINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPC 134

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+ H+Y+IER+P+   
Sbjct: 135 THKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY- 194

Query: 148 GGAPR 153
            GAPR
Sbjct: 195 -GAPR 197

[Close]

BLAST of IVF0020857 vs. ExPASy Swiss-Prot
Match: Q9CTH6 (rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 211.1 bits (536), Expect = 9.0e-54
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F    KLDL + MMDCLYAKC PCITDCVMAE+E+LGQK+RVALRIAKDPRF+RLPC
Sbjct: 75  FINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVALRIAKDPRFDRLPC 134

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMY++ H+Y+IER+P+   
Sbjct: 135 THKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLSNHRYNIERMPDDY- 194

Query: 148 GGAPR 153
            GAPR
Sbjct: 195 -GAPR 197

[Close]

BLAST of IVF0020857 vs. ExPASy Swiss-Prot
Match: O13610 (rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fcf1 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-43
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F    K+DL +G+M CLYAK  PCI+DCVMAELE+LG +YR+ALRIAKD RFERLPC
Sbjct: 73  FINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGIRYRIALRIAKDERFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERL 143
           THKGTYADDC+V+RV QHKCY+VAT D++LK+RIRKIPG+PI+ +  H+  +ERL
Sbjct: 133 THKGTYADDCIVQRVMQHKCYLVATNDKNLKQRIRKIPGIPILSVANHKIRVERL 187

[Close]

BLAST of IVF0020857 vs. ExPASy TrEMBL
Match: A0A1S3B8E3 (rRNA-processing protein FCF1 homolog OS=Cucumis melo OX=3656 GN=LOC103486894 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.1e-65
Identity = 121/126 (96.03%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 192

Query: 148 GGAPRM 154
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. ExPASy TrEMBL
Match: A0A6J1DX25 (rRNA-processing protein FCF1 homolog OS=Momordica charantia OX=3673 GN=LOC111025245 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.0e-65
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRHQYSIERLPEATI
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRHQYSIERLPEATI 192

Query: 148 GGAPRM 154
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. ExPASy TrEMBL
Match: A0A0A0LEW8 (PINc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.0e-65
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRHQYSIERLPEATI
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRHQYSIERLPEATI 192

Query: 148 GGAPRM 154
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. ExPASy TrEMBL
Match: A0A6J1J3K9 (rRNA-processing protein FCF1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482358 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.9e-65
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEAT+
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATM 192

Query: 148 GGAPRM 154
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. ExPASy TrEMBL
Match: A0A6J1F9T9 (rRNA-processing protein FCF1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111442132 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.9e-65
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEAT+
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATM 192

Query: 148 GGAPRM 154
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. NCBI nr
Match: XP_008443271.1 (PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis melo] >XP_008443272.1 PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis melo])

HSP 1 Score: 255 bits (651), Expect = 5.11e-84
Identity = 121/126 (96.03%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 192

Query: 148 GGAPRM 153
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. NCBI nr
Match: XP_038903189.1 (rRNA-processing protein FCF1 homolog [Benincasa hispida])

HSP 1 Score: 255 bits (651), Expect = 5.11e-84
Identity = 121/126 (96.03%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 192

Query: 148 GGAPRM 153
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. NCBI nr
Match: XP_022158778.1 (rRNA-processing protein FCF1 homolog [Momordica charantia] >XP_022158779.1 rRNA-processing protein FCF1 homolog [Momordica charantia])

HSP 1 Score: 254 bits (650), Expect = 7.26e-84
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRHQYSIERLPEATI
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRHQYSIERLPEATI 192

Query: 148 GGAPRM 153
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. NCBI nr
Match: XP_004136642.1 (rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hypothetical protein Csa_002627 [Cucumis sativus])

HSP 1 Score: 254 bits (650), Expect = 7.26e-84
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRHQYSIERLPEATI
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRHQYSIERLPEATI 192

Query: 148 GGAPRM 153
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. NCBI nr
Match: XP_022935178.1 (rRNA-processing protein FCF1 homolog [Cucurbita moschata] >XP_022983875.1 rRNA-processing protein FCF1 homolog [Cucurbita maxima] >XP_022983876.1 rRNA-processing protein FCF1 homolog [Cucurbita maxima] >KAG6580887.1 rRNA-processing protein FCF1-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017645.1 rRNA-processing protein FCF1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254 bits (648), Expect = 1.46e-83
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC
Sbjct: 73  FINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 132

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
           THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEAT+
Sbjct: 133 THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATM 192

Query: 148 GGAPRM 153
           GGAPRM
Sbjct: 193 GGAPRM 198

[Close]

BLAST of IVF0020857 vs. TAIR 10
Match: AT2G46230.1 (PIN domain-like family protein )

HSP 1 Score: 233.8 bits (595), Expect = 9.2e-62
Identity = 106/125 (84.80%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALRIAKDP FERLPC
Sbjct: 71  FINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALRIAKDPHFERLPC 130

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
            HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T  +YSIE+LPEAT+
Sbjct: 131 IHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTNRKYSIEKLPEATL 190

Query: 148 GGAPR 153
           GGAPR
Sbjct: 191 GGAPR 195

[Close]

BLAST of IVF0020857 vs. TAIR 10
Match: AT2G46230.2 (PIN domain-like family protein )

HSP 1 Score: 183.0 bits (463), Expect = 1.9e-46
Identity = 83/97 (85.57%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALRIAKDP FERLPC
Sbjct: 71  FINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALRIAKDPHFERLPC 130

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKI 125
            HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRK+
Sbjct: 131 IHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKV 167

[Close]

BLAST of IVF0020857 vs. TAIR 10
Match: AT1G26530.1 (PIN domain-like family protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-38
Identity = 80/125 (64.00%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 28  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPC 87
           F  F   NK+DLEKGM                M  + ++   Y     IAKDPRFERLPC
Sbjct: 71  FINFSIQNKIDLEKGM----------------MVFVRKMHSLYYGL--IAKDPRFERLPC 130

Query: 88  THKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATI 147
             KGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T+ +YSIE+LPEATI
Sbjct: 131 VLKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTQRKYSIEKLPEATI 177

Query: 148 GGAPR 153
           GGAPR
Sbjct: 191 GGAPR 177

[Close]

BLAST of IVF0020857 vs. TAIR 10
Match: AT2G34570.1 (PIN domain-like family protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.0e-04
Identity = 27/91 (29.67%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 56  TDCVMAELERLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVERV----TQHKCYIV 115
           T CV+AELE+LG+ +  +L  A+        C H +   AD+CL E +    T+H  + +
Sbjct: 63  TRCVIAELEKLGKDFAESLEAAQ--TLNTATCEHEEAKTADECLSEVIGVQNTEH--FFL 122

Query: 116 ATCDRDLKRRIRKIPGVPIMYITRHQYSIER 142
            T D + +R++++   VP+++  R+   I++
Sbjct: 123 GTQDAEFRRKLQQESIVPLVFGLRNILLIDQ 149

The following BLAST results are available for this feature:

BLAST of IVF0020857 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32PD0	8.1e-55	80.80	rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1	[more]
Q9Y324	8.1e-55	80.80	rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=1 SV=1	[more]
Q5RFQ0	8.1e-55	80.80	rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1	[more]
Q9CTH6	9.0e-54	78.40	rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2	[more]
O13610	2.5e-43	67.83	rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of IVF0020857 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8E3	3.1e-65	96.03	rRNA-processing protein FCF1 homolog OS=Cucumis melo OX=3656 GN=LOC103486894 PE=...	[more]
A0A6J1DX25	4.0e-65	95.24	rRNA-processing protein FCF1 homolog OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A0A0LEW8	4.0e-65	95.24	PINc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=3 S...	[more]
A0A6J1J3K9	6.9e-65	95.24	rRNA-processing protein FCF1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482358...	[more]
A0A6J1F9T9	6.9e-65	95.24	rRNA-processing protein FCF1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]

BLAST of IVF0020857 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443271.1	5.11e-84	96.03	PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis melo] >XP_008443272.1 P...	[more]
XP_038903189.1	5.11e-84	96.03	rRNA-processing protein FCF1 homolog [Benincasa hispida]	[more]
XP_022158778.1	7.26e-84	95.24	rRNA-processing protein FCF1 homolog [Momordica charantia] >XP_022158779.1 rRNA-...	[more]
XP_004136642.1	7.26e-84	95.24	rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hypothetical ...	[more]
XP_022935178.1	1.46e-83	95.24	rRNA-processing protein FCF1 homolog [Cucurbita moschata] >XP_022983875.1 rRNA-p...	[more]

BLAST of IVF0020857 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46230.1	9.2e-62	84.80	PIN domain-like family protein	[more]
AT2G46230.2	1.9e-46	85.57	PIN domain-like family protein	[more]
AT1G26530.1	1.1e-38	64.00	PIN domain-like family protein	[more]
AT2G34570.1	3.0e-04	29.67	PIN domain-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002716	PIN domain	SMART	SM00670	PIN_9	coord: 28..119 e-value: 1.3E-4 score: 31.3
None	No IPR available	GENE3D	3.40.50.1010		coord: 24..147 e-value: 8.2E-40 score: 138.1
None	No IPR available	PANTHER	PTHR12416:SF2	RRNA-PROCESSING PROTEIN FCF1 HOMOLOG	coord: 29..152
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 29..152
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 45..141 e-value: 2.9E-40 score: 136.6
IPR037503	rRNA-processing protein Fcf1, PIN domain	CDD	cd09864	PIN_Fcf1-like	coord: 35..140 e-value: 1.1457E-84 score: 242.441
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 32..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020857.2	IVF0020857.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome