IVF0020674 (gene) Melon (IVF77) v1

Overview


Name	IVF0020674
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cold and drought regulatory protein
Location	chr04: 27314007 .. 27314761 (+)
RNA-Seq Expression	IVF0020674
Synteny	IVF0020674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAACGGATACATTTTGGATAAACTGAATTTATTCGTTTCAATTCACCTTTTCCCATCTATAAATTCCCCTTCTTTCCTTCCCCATTTTCCACAAACACAAGAACGTAACCCCATTCCAAATCCATCATCAACAATCAAAACATGTCGGGATTCATCGAGAAAATTGGCGAGAAGCTCCACATTGGAGGCGATCACAAGGGAGAGCACCACGACGCTCACAAGGGTGAGCATCACGACGAACACAAGAAGCACGAGAAGAAAGAGGAGCACCATGGAGAAGGGCACAAGGAAGGGATAATTGAGAAGATCAAGGATAAGATCCATGGGGGGGATGGTCATCATGACGAGAAAGGGGAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGGTGAGCACGGCCACGAACACCACGGCGGAGATAGCAGCAGCGATAGCGATAGCGATTGATGGATCAGATCAGCTCGGAATCATTAATTAAGAGGTAGATTGTGTTCCGATCGCGTGTGTTGTGTGTTTAGTATAATAATCTCATGACTCCCTTTTGGTTTAATCCCTCTGTTTCCGATCTACGTTTTTTGTTTTTAATGTAAGATTGTTATGTACTGTATGTGTGGTGTATAATAAAGATTATGAGATTTTATATGATCTTTACCCATTTTCATAAGATCTGTATGGTGATTTTTTCTATTAAGATCAAGAAGATCAGATCGGATATCGATTACGGAAACCGATCACTTTTAACTTCTCGGAGAAAC

mRNA sequence

AATCAACGGATACATTTTGGATAAACTGAATTTATTCGTTTCAATTCACCTTTTCCCATCTATAAATTCCCCTTCTTTCCTTCCCCATTTTCCACAAACACAAGAACGTAACCCCATTCCAAATCCATCATCAACAATCAAAACATGTCGGGATTCATCGAGAAAATTGGCGAGAAGCTCCACATTGGAGGCGATCACAAGGGAGAGCACCACGACGCTCACAAGGGTGAGCATCACGACGAACACAAGAAGCACGAGAAGAAAGAGGAGCACCATGGAGAAGGGCACAAGGAAGGGATAATTGAGAAGATCAAGGATAAGATCCATGGGGGGGATGGTCATCATGACGAGAAAGGGGAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGGTGAGCACGGCCACGAACACCACGGCGGAGATAGCAGCAGCGATAGCGATAGCGATTGATGGATCAGATCAGCTCGGAATCATTAATTAAGAGGTAGATTGTGTTCCGATCGCGTGTGTTGTGTGTTTAGTATAATAATCTCATGACTCCCTTTTGGTTTAATCCCTCTGTTTCCGATCTACGTTTTTTGTTTTTAATGTAAGATTGTTATGTACTGTATGTGTGGTGTATAATAAAGATTATGAGATTTTATATGATCTTTACCCATTTTCATAAGATCTGTATGGTGATTTTTTCTATTAAGATCAAGAAGATCAGATCGGATATCGATTACGGAAACCGATCACTTTTAACTTCTCGGAGAAAC

Coding sequence (CDS)

ATGTCGGGATTCATCGAGAAAATTGGCGAGAAGCTCCACATTGGAGGCGATCACAAGGGAGAGCACCACGACGCTCACAAGGGTGAGCATCACGACGAACACAAGAAGCACGAGAAGAAAGAGGAGCACCATGGAGAAGGGCACAAGGAAGGGATAATTGAGAAGATCAAGGATAAGATCCATGGGGGGGATGGTCATCATGACGAGAAAGGGGAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGGTGAGCACGGCCACGAACACCACGGCGGAGATAGCAGCAGCGATAGCGATAGCGATTGA

Protein sequence

MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD

Homology

[Close]

BLAST of IVF0020674 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.8e-22
Identity = 70/106 (66.04%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGG----DHKGEHH----DAHKGEHHDEHKKHEKKEEHHGEGHKEGI 60
           MSG I KI E LH+GG    +HKGEHH      HKGEHH EHK   K E+HHGE HKEG+
Sbjct: 1   MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGE-HKEGL 60

Query: 61  IEKIKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSD 99
           ++KIKDKIH GDGH  +KGEKKKK+ KKK EHGH+HHG  SSSDSD
Sbjct: 61  VDKIKDKIH-GDGH--DKGEKKKKKDKKKKEHGHDHHGHSSSSDSD 102

[Close]

BLAST of IVF0020674 vs. ExPASy Swiss-Prot
Match: Q9SLJ2 (Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.0e-11
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHK-GEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDK 60
           M+G I KIG+ LHIGG +K GEH      +  +EHKKH   +EH    HKEGI++KIKDK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEH------KKEEEHKKH--VDEHKSGEHKEGIVDKIKDK 60

Query: 61  IHGGDG-HHDEKG------EKKKKEKKKKGEHGHEHHGGDSSSDSDSD 101
           IHGG+G  HD +G      +KKKK+KK+K  H   HH   SSSDSDSD
Sbjct: 61  IHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHH--SSSSDSDSD 98

[Close]

BLAST of IVF0020674 vs. ExPASy TrEMBL
Match: A0A5A7UF86 (Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007000 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.8e-45
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKI 60
           MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKI
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKI 60

Query: 61  HGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 101
           HGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD
Sbjct: 61  HGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of IVF0020674 vs. ExPASy TrEMBL
Match: A0A1S3B8E4 (protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.8e-45
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKI 60
           MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKI
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKI 60

Query: 61  HGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 101
           HGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD
Sbjct: 61  HGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of IVF0020674 vs. ExPASy TrEMBL
Match: A0A6J1I7B7 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEHH-DAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDK 60
           MSG +EKIGEKLHIGGDHKGEH  D H+ + H+  KKH +K EHHGEGHKEG++EKIKDK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGDHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61  IHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 101
           IHGG  HHDEKGEKKKK+K+KK +  H+  G  SSSDSDSD
Sbjct: 61  IHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of IVF0020674 vs. ExPASy TrEMBL
Match: A0A6J1IAZ2 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.3e-23
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEHH-DAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDK 60
           MSG +EKIGEKLHIGGDHKGEH  + H+ + H+  KKH +K EHHGEGHKEG++EKIKDK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61  IHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 101
           IHGG  HHDEKGEKKKK+K+KK +  H+  G  SSSDSDSD
Sbjct: 61  IHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of IVF0020674 vs. ExPASy TrEMBL
Match: A0A6J1FQD3 (protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-21
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEHH-DAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDK 60
           M+G +EKIGEKLHIGGDHKGEH  + H+ + H+  KKH +K EHHGEGHKEG++EKIKDK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61  IHGGDGHHDEKGE-KKKKEKKKKGEHGHEHHGG-DSSSDSDSD 101
           IHG   HHDEKGE KKKKEKKKKGEH   H GG  SSSDSDSD
Sbjct: 61  IHG--DHHDEKGEKKKKKEKKKKGEH---HEGGHSSSSDSDSD 98

[Close]

BLAST of IVF0020674 vs. NCBI nr
Match: XP_008443295.1 (PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucumis melo var. makuwa] >TYK25548.1 zinc transporter ZIP6 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 2.21e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKI 60
           MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKI
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDKI 60

Query: 61  HGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100
           HGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD
Sbjct: 61  HGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of IVF0020674 vs. NCBI nr
Match: XP_011652200.1 (protein SRC1 [Cucumis sativus] >KAE8651191.1 hypothetical protein Csa_001440 [Cucumis sativus])

HSP 1 Score: 152 bits (383), Expect = 1.73e-45
Identity = 91/105 (86.67%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEH----HDEHKKHEKKEEHHGEG-HKEGIIEK 60
           MSGFIEKIGEKLHIGGDHKGEHHDAHKGEH    HDEHKKHE   EHHGEG HKEGI++K
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHKGEHHDEHKKHE---EHHGEGAHKEGIMDK 60

Query: 61  IKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100
           IKDKIHGGD HH+EKGEKKKKEKKKKGEHGH+H GGDSSSDSDSD
Sbjct: 61  IKDKIHGGD-HHEEKGEKKKKEKKKKGEHGHKHEGGDSSSDSDSD 101

[Close]

BLAST of IVF0020674 vs. NCBI nr
Match: XP_038903205.1 (protein SRC1 [Benincasa hispida])

HSP 1 Score: 140 bits (354), Expect = 4.41e-41
Identity = 88/104 (84.62%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDH-KGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDK 60
           MSGFIEKIGEKLHIGGDH KGEHHD HKGEHHDEHKKH K EEHHGEGHKEG+IEKIKDK
Sbjct: 1   MSGFIEKIGEKLHIGGDHNKGEHHDGHKGEHHDEHKKHGKSEEHHGEGHKEGLIEKIKDK 60

Query: 61  IHGGDGHHDEKGEKKKKEKK---KKGEHGHEHHGGDSSSDSDSD 100
           IHG    HDEKGEKKKKEKK   KKGEH H H GG SSSDSDSD
Sbjct: 61  IHGD---HDEKGEKKKKEKKEKKKKGEH-HHHDGGHSSSDSDSD 100

[Close]

BLAST of IVF0020674 vs. NCBI nr
Match: KAG7028450.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117 bits (292), Expect = 1.16e-31
Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEH-KKHEKKEEHHGEGHKEGIIEKIKDK 60
           M+G +EKIGEKLHIGGDHKGEHH+  K EH  EH KKH +K EHHGEGHKEG++EKIKDK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61  IHGGDGHHDEKGEKKKK-EKKKKGEHGHEHHGG-DSSSDSDSD 100
           IHG   HHDEKGEKKKK EKKKKGEH   H GG  SSSDSDSD
Sbjct: 61  IHGD--HHDEKGEKKKKKEKKKKGEH---HEGGHSSSSDSDSD 98

[Close]

BLAST of IVF0020674 vs. NCBI nr
Match: XP_022974702.1 (protein SRC1-like [Cucurbita maxima])

HSP 1 Score: 116 bits (290), Expect = 2.55e-31
Identity = 79/107 (73.83%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHD----EH-KKHEKKEEHHGEGHKEGIIEK 60
           MSG +EKIGEKLHIGGDHKGEH    KGEHH+    EH KKH +K EHHGEGHKEG++EK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEH----KGEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIHGGDGHHDEKGEKKKK--EKKKKGEHGHEHHGGDSSSDSDSD 100
           IKDKIHGG  HHDEKGEKKKK  EKKKKGEH  +  G  SSSDSDSD
Sbjct: 61  IKDKIHGGGDHHDEKGEKKKKKKEKKKKGEH--QEGGHSSSSDSDSD 101

[Close]

BLAST of IVF0020674 vs. TAIR 10
Match: AT1G54410.1 (dehydrin family protein )

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-12
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHK-GEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEGIIEKIKDK 60
           M+G I KIG+ LHIGG +K GEH      +  +EHKKH   +EH    HKEGI++KIKDK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEH------KKEEEHKKH--VDEHKSGEHKEGIVDKIKDK 60

Query: 61  IHGGDG-HHDEKG------EKKKKEKKKKGEHGHEHHGGDSSSDSDSD 101
           IHGG+G  HD +G      +KKKK+KK+K  H   HH   SSSDSDSD
Sbjct: 61  IHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHH--SSSSDSDSD 98

The following BLAST results are available for this feature:

BLAST of IVF0020674 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04132	7.8e-22	66.04	Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1	[more]
Q9SLJ2	8.0e-11	53.70	Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1	[more]

BLAST of IVF0020674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UF86	8.8e-45	100.00	Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A1S3B8E4	8.8e-45	100.00	protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1	[more]
A0A6J1I7B7	2.5e-23	70.30	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1	[more]
A0A6J1IAZ2	7.3e-23	69.31	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1	[more]
A0A6J1FQD3	2.3e-21	71.84	protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1	[more]

BLAST of IVF0020674 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443295.1	2.21e-59	100.00	PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucu...	[more]
XP_011652200.1	1.73e-45	86.67	protein SRC1 [Cucumis sativus] >KAE8651191.1 hypothetical protein Csa_001440 [Cu...	[more]
XP_038903205.1	4.41e-41	84.62	protein SRC1 [Benincasa hispida]	[more]
KAG7028450.1	1.16e-31	75.73	Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022974702.1	2.55e-31	73.83	protein SRC1-like [Cucurbita maxima]	[more]

BLAST of IVF0020674 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54410.1	5.7e-12	53.70	dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..100
None	No IPR available	PANTHER	PTHR34941:SF4	PROTEIN SRC1	coord: 1..98
IPR039285	Dehydrin HIRD11-like	PANTHER	PTHR34941	DEHYDRIN HIRD11	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020674.2	IVF0020674.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding