IVF0020672 (gene) Melon (IVF77) v1

Overview
NameIVF0020672
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr09: 20266293 .. 20268026 (+)
RNA-Seq ExpressionIVF0020672
SyntenyIVF0020672
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATAAGAACAATTAATAAAGAAAATTTATTTTAAGAAAAAATGGCTTCCAAAAAGCAATTCTCAAAAATAGTTGCTGTCTTGTTATGTCTTCTGCTTCTTCTAGCTTCCACTGCCACTGCAAAACGACATTTGCTTCAAGGTATGCTTTTTATATTATCCCTAAGTTCAAAATCAGAATGCATTTTCGTATCATAATAACACTACTAATTATTAAAATATACCGAAAATATTTATAAAATATAGTCAAATTTCATTTATAGAATCTAAAGTTTTGTTATATTTTTTTTAACAAAATTTGTTCATTGTTCATTAATTTTTTCCATCTAACCCCAGATTTTCTAATATTTTTTGTTCTTCAAAACATAGAAGATACGTAAACATCAATACCAATGAATTAAACCTACTGATCGACCGAAATCGATTAAATCGTTATAGGTCCACAAAAATTACTCGATCAGTAGTTCATCATTAGTGCAAGAATTCAGACATTTTCCGACAAAGAAGAGTTCTTAAAAAAAGTCTTTGTAACGAAACCAACATTTTCTGAGGCTATAGAAACATGAGGGGCCAATTTTCTTCTTATGGCAGTCTTACTCCTAAGTACTTTTCTTAAAACTTATTCTAGTCTTTACACAATTATTTATTTAGGGGTATTTTCTAAGAATAATAAAAAAACAAATTATTTACAACAAAATTACTATATGACAAAAAAATGTAATCAAATCTACAAACTTCTTTTTTATTTATAGAACTTTTTACCTACTTTCTTTATGAGTGTTTTAAAAAAAATCAAACTAAGCTTTGAAAATTATTAAAAAAAATGAAGAGTTCTGCTTGGTAGGGAATTGAATTTTGGCTTTTGGCTTTTGAAAATTAAGTTTATTTTCTCACGAACTTTTCATGGTTTTCGTAAAAGTTTTTAGCAACATAATTATCGTTTTGATCTATGTTCATATTAAAAAACAGTGTCTAGGAATTTAATTAGCATACACATATAATCTTATAAACACAAAATTAATTGTTTCTAATAGTAGTTTAATGAAATTCCTTTGTGTTATATTTATCAATTAATAATAATATTGTTTAGAAATGAAATAAATAGAAAAATTATTTTAAATGAAAAAAATTTTGAAATGTTTATAATTGTAGTAAAATATCACCATCCATATGTGATAGACTATGGTAGGATACGTATAATAGTCTAACTTGATCTATCACGATTTATGGTAAATAGACTGCGATATTTCCTAAATATTATTAATTTTGGTATACTTGAAACTAACTCAAATAAGTATGTTATCTTAAATTGCAAATGTAGGAGATCGACTTCCACCATCTTATAAAGACACCCCATGGGACAGTAGAGGTCCCTACGGAGGATAAGCGTTCAATATCACATGCCCCAACAAGAGACAAAAGTTAAAGACTTCAGAGAAAAATTATACTAAGATTGTCGTAACTAAGTGTAATGAATGATATAGTTTCTTTTATGTAATAAATAATCCAGTTTTTACTGGAAATCTGATTACGATCAGGTTTGTTGTCTAGAGTGCAATTACCTAACATTTGATTACAATGTCAAAGTTAGATTTGTTGTGTTTATGAGTGAAAATTGGGGCCGATGGATCCATAGTTTTTGTTTAGAATGGACTCTTAGATATGTAATACCATTCTACATTCTACATATTTCGAACAAAATAAAATGTTTATTTGTATTATTATTTACTTTAA

mRNA sequence

AAAATAAGAACAATTAATAAAGAAAATTTATTTTAAGAAAAAATGGCTTCCAAAAAGCAATTCTCAAAAATAGTTGCTGTCTTGTTATGTCTTCTGCTTCTTCTAGCTTCCACTGCCACTGCAAAACGACATTTGCTTCAAGGAGATCGACTTCCACCATCTTATAAAGACACCCCATGGGACAGTAGAGGTCCCTACGGAGGATAAGCGTTCAATATCACATGCCCCAACAAGAGACAAAAGTTAAAGACTTCAGAGAAAAATTATACTAAGATTGTCGTAACTAAGTGTAATGAATGATATAGTTTCTTTTATGTAATAAATAATCCAGTTTTTACTGGAAATCTGATTACGATCAGGTTTGTTGTCTAGAGTGCAATTACCTAACATTTGATTACAATGTCAAAGTTAGATTTGTTGTGTTTATGAGTGAAAATTGGGGCCGATGGATCCATAGTTTTTGTTTAGAATGGACTCTTAGATATGTAATACCATTCTACATTCTACATATTTCGAACAAAATAAAATGTTTATTTGTATTATTATTTACTTTAA

Coding sequence (CDS)

ATGGCTTCCAAAAAGCAATTCTCAAAAATAGTTGCTGTCTTGTTATGTCTTCTGCTTCTTCTAGCTTCCACTGCCACTGCAAAACGACATTTGCTTCAAGGAGATCGACTTCCACCATCTTATAAAGACACCCCATGGGACAGTAGAGGTCCCTACGGAGGATAA

Protein sequence

MASKKQFSKIVAVLLCLLLLLASTATAKRHLLQGDRLPPSYKDTPWDSRGPYGG
Homology
[Close]
BLAST of IVF0020672 vs. ExPASy TrEMBL
Match: A0A0A0KRJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168880 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 1  MASKKQFSKIVAVLLCLLLLLASTATAKRHLLQG----DRLPPSYKDTPWDSRGPYGG 55
          MASKKQFS+IVA LLCLL LLASTATAKRHLLQ       LPPSYKD PW+S+GPYGG
Sbjct: 1  MASKKQFSRIVAALLCLLFLLASTATAKRHLLQSPPDVGNLPPSYKDIPWNSKGPYGG 58

[Close]
BLAST of IVF0020672 vs. NCBI nr
Match: KAE8647933.1 (hypothetical protein Csa_000160 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.26e-20
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0 

Query: 1  MASKKQFSKIVAVLLCLLLLLASTATAKRHLLQGD--RLPPSYKDTPWDSRGPYGG 54
          MASKKQFS+IVA LLCLL LLASTATAKRHLLQ     LPPSYKD PW+S+GPYGG
Sbjct: 1  MASKKQFSRIVAALLCLLFLLASTATAKRHLLQSPPGNLPPSYKDIPWNSKGPYGG 56

[Close]
BLAST of IVF0020672 vs. NCBI nr
Match: KAA0055110.1 (hypothetical protein E6C27_scaffold231G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 44.7 bits (104), Expect = 4.85e-04
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 1  MASKKQFSKIVAVLLCLLLLLASTATAKRHLL-----QGDRLPPSYK-DTPWD--SRGPY 54
          MASKK FS+IVA++L LLLL  +T T+KRHLL      G R       D PW+  S G +
Sbjct: 1  MASKKHFSRIVAIVLSLLLLFTTTVTSKRHLLTSPNANGQRSGTQEALDDPWEPGSHGVW 60

The following BLAST results are available for this feature:
BLAST of IVF0020672 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0020672 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRJ94.4e-1477.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168880 PE=4 SV=1[more]
BLAST of IVF0020672 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647933.11.26e-2080.36hypothetical protein Csa_000160 [Cucumis sativus][more]
KAA0055110.14.85e-0450.00hypothetical protein E6C27_scaffold231G00360 [Cucumis melo var. makuwa][more]
BLAST of IVF0020672 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020672.1IVF0020672.1mRNA