IVF0020666 (gene) Melon (IVF77) v1

Overview


Name	IVF0020666
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr08: 22011551 .. 22011814 (-)
RNA-Seq Expression	IVF0020666
Synteny	IVF0020666

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAGTAGAAGTCGCTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAGGACTACCTCCAAACAAGCCTACCGCGAGACCTGGGAACTCAAGCGTCAACTCTGTACTACCTTCAAAGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAGCTCTAATCGGATGTAGCAACATTAGGAAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCGCTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAGGACTACCTCCAAACAAGCCTACCGCGAGACCTGGGAACTCAAGCGTCAACTCTGTACTACCTTCAAAGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAGCTCTAATCGGATGTAGCAACATTAGGAAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCGCTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAGGACTACCTCCAAACAAGCCTACCGCGAGACCTGGGAACTCAAGCGTCAACTCTGTACTACCTTCAAAGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAGCTCTAATCGGATGTAGCAACATTAGGAAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAG

Protein sequence

MTLVEVALKGPKRHPLTYPRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFIENNPYRRLTVTRSGGRKA

Homology

[Close]

BLAST of IVF0020666 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.1e-22
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFI 69
           G KRHPLTYPRKG LPPNKPTARP NSSVNSVLPS+EKSRAISYSNIQ LIGCSNIR+FI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 77
           E NP RR
Sbjct: 136 E-NPERR 141

[Close]

BLAST of IVF0020666 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.5e-21
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 19  PRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFIENNPYRRLT 78
           P++  L P +PTARP N SV S LPSKEKSRAI+YSNIQALIGCSNIR+FIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0020666 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.7e-21
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFIENNPYRRLT 78
           P++  L P KP A P N SVNSVLPS+EKSRAISYSNIQ LIGCSNIR+FIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0020666 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.7e-21
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFIENNPYRRLT 78
           P++  L P KP A P N SVNSVLPS+EKSRAISYSNIQ LIGCSNIR+FIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0020666 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.2e-19
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 19  PRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFIENNPYRRLT 78
           P++  L P +P A P N SVNS LPS+EKSR ISYSNIQ LIGCSNIR+FIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0020666 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 1.35e-28
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFI 69
           G KRHPLTYPRKG LPPNKPTARP NSSVNSVLPS+EKSRAISYSNIQ LIGCSNIR+FI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 76
           EN P RR
Sbjct: 136 EN-PERR 141

[Close]

BLAST of IVF0020666 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 2.56e-28
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 19  PRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFIENNPYRRLT 78
           P++  L P +PTARP N SV S LPSKEKSRAI+YSNIQALIGCSNIR+FIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0020666 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 8.85e-28
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFIENNPYRRLT 78
           P++  L P KP A P N SVNSVLPS+EKSRAISYSNIQ LIGCSNIR+FIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0020666 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 1.76e-26
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFIENNPYRRLT 78
           P++  L P KP A P N SVNSVLPS+EKSRAISYSNIQ LIGCSNIR+FIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0020666 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 2.30e-25
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 19  PRKGGLPPNKPTARPGNSSVNSVLPSKEKSRAISYSNIQALIGCSNIRKFIENNPYRRLT 78
           P++  L P +P A P N SVNS LPS+EKSR ISYSNIQ LIGCSNIR+FIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

The following BLAST results are available for this feature:

BLAST of IVF0020666 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020666 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMJ9	3.1e-22	88.06	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UGC7	4.5e-21	81.16	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TNL7	7.7e-21	81.16	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ULW2	7.7e-21	81.16	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SQ80	4.2e-19	75.36	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0020666 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057143.1	1.35e-28	88.06	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054224.1	2.56e-28	81.16	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054655.1	8.85e-28	81.16	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0043181.1	1.76e-26	81.16	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0032698.1	2.30e-25	75.36	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020666 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020666.1	IVF0020666.1	mRNA