IVF0020650 (gene) Melon (IVF77) v1

Overview
NameIVF0020650
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
Locationchr01: 2003353 .. 2008583 (+)
RNA-Seq ExpressionIVF0020650
SyntenyIVF0020650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATCACAAAATGTAATGGATCTGCAAAAAGCAGTTGTATCATTCTCATAGAGCTCTTCCAGAGACATCTTCAAGTATGCTTTCTTGCTTTGTTATAATTTTAGAGCCTTATCATTGATTATTGAATGATCAAACCAGTAAGATGTTATTAATGTTAGCTTAATCTGGTGACCTTGTACAAAAATGAGGTGTTTGAAATGAGAAATAGGAAAAACTAGAAGGGAAAGAACAGTAGCATATGTTTGATTTTTGAGATTTGGAACAATGGAGTTTCTTGAAAATTGAATGAAATCAATGAGTTTTTATGAAATTTGTTACTCTGATGACCCTCGATTTTGTTCTTGAAGCAATAAAATTTCTCTCTTCTAAATAAAATTTTAGTCATAAGATCAATGCATGCTTCAATTTTCATAATCATGGCGAAGTTAGGCATGCAGTATTTGCTGTTATTGTGTTTCTCTTTAAGTACTTTAACTTGCGCTTCATTATATGAGTTGAATTTGTGTAGCTTATTGTTTCTTTGGGTTTCTATGCACACAAATATTGCAAACTATAGAGCCTTGCATTTTGAATTTTTTATGCTAACATCATCATTCTTTGGCCCATTCTTTATCGCGAACTGCAGCGTACCTCTTCTGTTATGTTCTTTTGGTCTACCTTCAGCATTTTTGTTATGAACATGGATGCACACACAAATACGATAAGCGATGTGATATTTCTTGAAAAATTAGGATAGACAATACGATGAACGTAGTTTTTCAAAGAATATTATGCAGCTCAGAACTGTGCACATGTTACAGAGGAATTTTCAATTTTCAGGTTTATTGTACTCTTTATTTCCATCTCTTTGCAGCTGAGAACTTACTTGTATATTGAGGAATATTTTACTATGTTTTATCCCCTTCTATTTTTGTTTTTTTCCAAAATAAGAAACTGTAAATTTAAATCACTAAAGAGAAAGCAAACTGTAGGTAAAACCTTCCGGTCTAAGATTTGATGGAAAAAAAACAGTGATTACTATTTTCATTATTATTGAGCAAGAAACAAAACTTTCATTGATGGAATGAAAACAGTGACTGACGCTCAAAAGTTATGAACTCTTTTGATAATAAGAAAACAAAAAAGTTGACAGTAAAAATAATAGTATGCCAAACGAGACATCATGAATCTTGAATAGGATGTCCAACAAAGGGGTTGGAGAAAACACACTAGCACACAAAGAAGAGGTCTTTGAAGGAGTCTAAATGGATCAATCGTACCAAGGATATTATTATTATTATTATTGTATCCATGAATATATGGGCTTGCATGTGCACGCCTTGACTGCCTAGCCCTGATTTTGATTTAGAAAAATGATATAGGTGTGGTTATTAGATAGAGATTTGTGAAGGGCACAGTAATGTGAGGCCAGACCGTGCAATGAATTATGGATGTAATTCAGAAACAATCTGTTATTTGTAGATTTAATCTTATATACATAAGGAAAGACTAGAAAGCTTTTGTAAGTTATAATCAGCTTCATGTGGGGTGGAATAGTTGTAGATGAAGATAAATTACTATCCACTGCTACTCGTCTTCATTGCAAGGTTGAGCATCTTTCATTGCTATATCTTGGTCTTCCACTAGGTGAGTACCCGAAAAAGGTCTCTTTTTGGCAGCCGGTTAGGCAGAGTATAAAAAGAGTTGGATAGGTGGAAAAGATTCAATTTTTCACATGGTGGAAGGGCTACTTTGTGCAAGTTGGTGTTGTCCAATTTACCTATTCATTATGTTTTTGTTTCTTATGCCATCAAAGGCCATCTCCATTGAGTGTTGAAGGACTTCTTTCGAGAAGGAAACAAAGGCAGTAGGATAAATCATTTGGCAAAATGGGATTTAGTTTCTAGATCTCTTATGGATGGAGGCCTTGGTTTTGGTGATATAAAAGTTTGAAATGTGGCACTTCTTGCTAAATGGGGTTGGAGATACTTTTATGAAATTAATTCTCTGTGGCATATTGTGACTAATAGTATTCATGGAAAGGGAGGATTCAGGATGTTTGGACTTGGCCTTAGAAGTCCTTAGATTAGCATTTCCAAATCTTGGTTGCAAGTTGAATCATTGGTCAGTTTTTAAACTTTGGTATTGGGACCGGAATTGATTTTTGGTGTGATGTTTGTTTTGATGTTTTGCCTTTAAAAGTGAAGTTCTCTGATTCATATAGAATTGCATTCTTACCCACAGGCACAATCTCTCTGTCATACACACTAAAAGATGATGAGATTAAATCATCAAATAACCCAAAAACTTAAGTCCATGGGTGGAGCTAAATTTAATTATATATCTTTTTCATTGTGAGTTTGTAGATTTGAAATACTTGAAAGACTTAACAAGTAGAAATGAATATTAATTATTCTGATACCATCTTAAATTACTTATCGATCCAAAAGCTTGAGTTGATGGATGAAGATAAACTAAACTTAATTTTATATCATATAAGAGAAAGTGAAGAGTAATTGCTCAACCGGAAGGTCGCATTTGGTCTTTGGGGAACTTTTGAGTTAAATCCCTTTCCAAACATTTGGAAGTTTCGTCTCCATGGGAAACAGTGGTTTATAAAGCTTTATAGAAGACAAAGAGCCCTCCGCGAGTTGACAATGATTCTTGGAATGTTGAATTACTCCTCTACTCTCCAAAGGAAACTACCTTCAAATTGCTTGCTGCCTCCATCTCTGCAGTTTGCAAGATGGATGGTGAAGATCTTCAACACACATTCTTTGAACGTCAATTTTCCAGATGTGGCTGGAACCGTTTGCTGACCACTTTTTCAATATCCAATGGGTTTCTTCGTGAGACATTCAAAGAAAACGTTCTTCAGATTCTGTTTGGAATTTCTTCAAAGCCAAAGTTTGGGCTGTTATGGTTAAAGGCGGTCTAGGCCATCATTGCATAATCTTCCATTCTAGACGTACGGATCAACTTTTTCCAGGTGATTTCCTAAATTTTATATAGAAATGTTGTGTAAATTTATATAATTATAAAATTGATTTAGAATCTCAAGAAAATTAGTTATGTTTTGGTATAAGATCATAGATAATAACAATAACAAAAAAGTAGTTAAAGATAATCGAAATTGAAAAAGTGATATAAATGTCGGTTTTCAAATTCTTCATGTAATATCTACAGAGATGGACCGAGAAAAGCAGCTAGTTTATAAGAGTTTCAACGACGCTGTTTGTTGCCGACAATTTCCTCAAAAATTTTGATGTTTTCCATAATCTATTTTACGAAGGAGAAATGAAAATATGGAACTTGGGAGGGGACATTTTCGATAAATTGCCCGGCGGCTGGCGTTAAAGTTGGGTAGGGAAGAAAAGTAGAAAAGTTGGTTTGCATGTCATTGGCTGGTTGGGTATTGACGAATAGGGACTCTGTGTGTGGGCTTGTGTTCGACGCAAGGAGATTCTTCTCCATCCATATAAAACACACACAATTTCCAGATAGTTTTCGAGCTAAATCGTCTACAAGCCTTCGATCATCATTTTCTCTCTGAAATCTCCTTGGTTTCTCCAATTTCTCTGAATTCGACTCCTTTCCTGATCCATTGCCCAATCGCACTCTTACCTTTTGAATGGATACAAATAATTGTAGACCTACTCAAGGTGGAATTGAGGCTGGGGATTGGAGGCCTCAATTGCACCCCGATTGTCGATCGTGGATTGTCGAAAAAATGTATGATTTCTTACATTTTTCTTCTTCCATTATATCTTATTTCACATATGCGTTTGACCCTTTATAGCTTTTTGTTTCATACTTCATTAATTAGGTTTAGTGAAATAAACTGTACTCATCACACCTTGTAAATACACGACTGTCTTCCATCTTTATCTTATTTTTTCATAACATTTTCTTAAATTTTGTGCCTCACTCACACATAGAGGCGAAACTGTTTCCAGAACATAAGGTTTTTGGGGGAGCTTTCTTTTTGTTTTTTCAGGTACTATCCATAAAATATATATTTGTGGCAGCGTGGATCTTTCTGACTTTATCTGGATCATTCCTTCGAAGTTCATAGAGTATCCAATATTATTATTCATGGTCATAAATTGCTATTGTAGTTTTTCTTTCAAGAACAACTTTTCATGCCTTTTCACTTAATACACTATTTAGCCATTGTGCTCTTATCTTCTTCTTCTTCTTCTTTTTTTCTTTTTGTTAGCACGGAGACATTGAAGAGGCACCATTCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATGGCTGTAAGGTTTGAGGAAAAGATTTATACTCAAGCTAGCCGTCAGGTATTCTTGCTCACTTTATTGTAGTTTAACTCAAGGATTGTCTTTTTTCTTTAGGGCTTAGACTTTTTTTTGTGTGCCCATGTATATTCTTTCATTTTTCTCATTGAAATCCTGTTTTATTGTGTTGTGTTCTTCCGCCAAACACAACTTTGTCTTAGCAATCTCTTGAGTGAGTACTCTCACCAATTTTACTTTTGATCTCTGATTTCAGTTAGATTACCTAAAGAAAATATCTCTGAAGATGCTTATCATAGAATCAGTAACTCAGCACCCTATGGGGAATTCATTACCATCAAATCGGATCAATAATATTGAAGATCCTGAATTAGGTACAAAAAATTTCCCAATGTAAGCTTTAATATATCATTGTGTATAGATATTTTATAAATTATTTTGTTTTTTTTTTTTCTTCTTATAGAATATTTGAGTGAAGATGAACTATTCACAAAGATGATCGAAGAAGAATGGAATTGGGGAAAAGTTATGGGTTTTATTGCTAAAATAAAATAATTGTGTTTAGAACTTAGACGTTGTAATGTGCAATTTAGATGGGAACGATGGTTGGATTTAAATAGTAAAGTAATGAGCTGATTGCGAATCCATTCATTCAATTGTATGGCTTTAAATTGGTTATAAACTATGTAGGAAGTGAAGAGATAAATTCCATCTGCACAAGCAATTTATTTGAAAACTCTAAGCTTAAATGGTTTTATTGTCGAATTATTTTCGTTTCTTTATATTTTAACCCTTATCATTCTAAGCAATAGACTTGTTTTTCGGGGCATGTATGGGATAGTTCATGTTCGGTGCTTGGAAGTGCAAGATAATTAATATCTGAAATTCAATTGTACAGTTACTTTGAAACTATCTAGAAAAATTATTTATACAATTATTATGTGTAATACTTCTTTTTAACTATGT

mRNA sequence

CAATCACAAAATGTAATGGATCTGCAAAAAGCAGTTGTATCATTCTCATAGAGCTCTTCCAGAGACATCTTCAAAGAAAGTGAAGAGTAATTGCTCAACCGGAAGGTCGCATTTGGTCTTTGGGGAACTTTTGAGTTAAATCCCTTTCCAAACATTTGGAAGTTTCGTCTCCATGGGAAACAGTGGTTTATAAAGCTTTATAGAAGACAAAGAGCCCTCCGCGAGTTGACAATGATTCTTGGAATGTTGAATTACTCCTCTACTCTCCAAAGGAAACTACCTTCAAATTGCTTGCTGCCTCCATCTCTGCAGTTTGCAAGATGGATGGTGAAGATCTTCAACACACATTCTTTGAACGTCAATTTTCCAGATGTGGCTGGAACCGTTTGCTGACCACTTTTTCAATATCCAATGGGTTTCTTCGTGAGACATTCAAAGAAAACGTTCTTCAGATTCTGTTTGGAATTTCTTCAAAGCCAAAGTTTGGGCTGTTATGGTTAAAGGCGGTCTAGGCCATCATTGCATAATCTTCCATTCTAGACGTACGGATCAACTTTTTCCAGAGATGGACCGAGAAAAGCAGCTAGTTTATAAGAGTTTCAACGACGCTGTTTGTTGCCGACAATTTCCTCAAAAATTTTGATGTTTTCCATAATCTATTTTACGAAGGAGAAATGAAAATATGGAACTTGGGAGGGGACATTTTCGATAAATTGCCCGGCGGCTGGCGTTAAAGTTGGGTAGGGAAGAAAAGTAGAAAAGTTGGTTTGCATGTCATTGGCTGGTTGGGTATTGACGAATAGGGACTCTGTGTGTGGGCTTGTGTTCGACGCAAGGAGATTCTTCTCCATCCATATAAAACACACACAATTTCCAGATAGTTTTCGAGCTAAATCGTCTACAAGCCTTCGATCATCATTTTCTCTCTGAAATCTCCTTGGTTTCTCCAATTTCTCTGAATTCGACTCCTTTCCTGATCCATTGCCCAATCGCACTCTTACCTTTTGAATGGATACAAATAATTGTAGACCTACTCAAGGTGGAATTGAGGCTGGGGATTGGAGGCCTCAATTGCACCCCGATTGTCGATCGTGGATTGTCGAAAAAATCACGGAGACATTGAAGAGGCACCATTCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATGGCTGTAAGGTTTGAGGAAAAGATTTATACTCAAGCTAGCCGTCAGTTAGATTACCTAAAGAAAATATCTCTGAAGATGCTTATCATAGAATCAGTAACTCAGCACCCTATGGGGAATTCATTACCATCAAATCGGATCAATAATATTGAAGATCCTGAATTAGAATATTTGAGTGAAGATGAACTATTCACAAAGATGATCGAAGAAGAATGGAATTGGGGAAAAGTTATGGGTTTTATTGCTAAAATAAAATAATTGTGTTTAGAACTTAGACGTTGTAATGTGCAATTTAGATGGGAACGATGGTTGGATTTAAATAGTAAAGTAATGAGCTGATTGCGAATCCATTCATTCAATTGTATGGCTTTAAATTGGTTATAAACTATGTAGGAAGTGAAGAGATAAATTCCATCTGCACAAGCAATTTATTTGAAAACTCTAAGCTTAAATGGTTTTATTGTCGAATTATTTTCGTTTCTTTATATTTTAACCCTTATCATTCTAAGCAATAGACTTGTTTTTCGGGGCATGTATGGGATAGTTCATGTTCGGTGCTTGGAAGTGCAAGATAATTAATATCTGAAATTCAATTGTACAGTTACTTTGAAACTATCTAGAAAAATTATTTATACAATTATTATGTGTAATACTTCTTTTTAACTATGT

Coding sequence (CDS)

ATGGATACAAATAATTGTAGACCTACTCAAGGTGGAATTGAGGCTGGGGATTGGAGGCCTCAATTGCACCCCGATTGTCGATCGTGGATTGTCGAAAAAATCACGGAGACATTGAAGAGGCACCATTCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATGGCTGTAAGGTTTGAGGAAAAGATTTATACTCAAGCTAGCCGTCAGTTAGATTACCTAAAGAAAATATCTCTGAAGATGCTTATCATAGAATCAGTAACTCAGCACCCTATGGGGAATTCATTACCATCAAATCGGATCAATAATATTGAAGATCCTGAATTAGAATATTTGAGTGAAGATGAACTATTCACAAAGATGATCGAAGAAGAATGGAATTGGGGAAAAGTTATGGGTTTTATTGCTAAAATAAAATAA

Protein sequence

MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
Homology
[Close]
BLAST of IVF0020650 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-22
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 0 

Query: 1   MDTNNCRPT----QGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKM 60
           MD NN RP+    +  ++ GDWR QL PD R  IV KI ETLK+H   SG EG++ELR++
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINN 105
           A RFEEKI++ A  Q DYL+KIS+KML +E+ +Q+  G+S      NN
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANN 108

[Close]
BLAST of IVF0020650 vs. ExPASy TrEMBL
Match: A0A1S4E0H3 (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC107991347 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 3.9e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRF 60
           MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRF
Sbjct: 1   MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRF 60

Query: 61  EEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFT 120
           EEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFT
Sbjct: 61  EEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFT 120

Query: 121 KMIEEEWNWGKVMGFIAKIK 141
           KMIEEEWNWGKVMGFIAKIK
Sbjct: 121 KMIEEEWNWGKVMGFIAKIK 140

[Close]
BLAST of IVF0020650 vs. ExPASy TrEMBL
Match: A0A5D3C4Z1 (Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002860 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.5e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 56  MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSE 115
           MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSE
Sbjct: 1   MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSE 60

Query: 116 DELFTKMIEEEWNWGKVMGFIAKIK 141
           DELFTKMIEEEWNWGKVMGFIAKIK
Sbjct: 61  DELFTKMIEEEWNWGKVMGFIAKIK 85

[Close]
BLAST of IVF0020650 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 7.8e-31
Identity = 75/103 (72.82%), Postives = 82/103 (79.61%), Query Frame = 0 

Query: 1   MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMA 60
           MDTNN RPTQG   GIEAGDWR QL PD R  IV KI ETLKRH  VSG EGLSEL+K+A
Sbjct: 1   MDTNNWRPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  VRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSN 101
           VRFEEKIYT A+ Q DYL+KISLKML +E+ +Q PMG SLPSN
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSN 103

[Close]
BLAST of IVF0020650 vs. ExPASy TrEMBL
Match: A0A6J1HR60 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.9e-30
Identity = 74/103 (71.84%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMA 60
           MDTNN RPTQG   GIE GDWR QL PD R  IV KI ETLKRH  VSG EGLSEL+K+A
Sbjct: 1   MDTNNWRPTQGGEPGIEDGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  VRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSN 101
           VRFEEKIYT A+ Q DYL+KISLKML +E+ +Q PMG SLPSN
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSN 103

[Close]
BLAST of IVF0020650 vs. ExPASy TrEMBL
Match: A0A5D3C6P8 (Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002870 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.6e-30
Identity = 74/103 (71.84%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMA 60
           MD NN RPTQG   G+EAGDWR QL PD R  IV KI ETLKRH  VSGQEGLSELRK+A
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSN 101
           VRFEEKI+T A+ Q DYL+KISLKML +E+ TQ  MGN LPSN
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSN 103

[Close]
BLAST of IVF0020650 vs. NCBI nr
Match: XP_016901727.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis melo] >XP_016901728.1 PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis melo])

HSP 1 Score: 292 bits (747), Expect = 9.69e-100
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRF 60
           MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRF
Sbjct: 1   MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRF 60

Query: 61  EEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFT 120
           EEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFT
Sbjct: 61  EEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFT 120

Query: 121 KMIEEEWNWGKVMGFIAKIK 140
           KMIEEEWNWGKVMGFIAKIK
Sbjct: 121 KMIEEEWNWGKVMGFIAKIK 140

[Close]
BLAST of IVF0020650 vs. NCBI nr
Match: KAA0031518.1 (mediator of RNA polymerase II transcription subunit 15a [Cucumis melo var. makuwa] >TYK06971.1 mediator of RNA polymerase II transcription subunit 15a [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (434), Expect = 8.74e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 56  MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSE 115
           MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSE
Sbjct: 1   MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSE 60

Query: 116 DELFTKMIEEEWNWGKVMGFIAKIK 140
           DELFTKMIEEEWNWGKVMGFIAKIK
Sbjct: 61  DELFTKMIEEEWNWGKVMGFIAKIK 85

[Close]
BLAST of IVF0020650 vs. NCBI nr
Match: XP_031744494.1 (mediator of RNA polymerase II transcription subunit 15a isoform X2 [Cucumis sativus])

HSP 1 Score: 142 bits (359), Expect = 7.56e-41
Identity = 81/123 (65.85%), Postives = 90/123 (73.17%), Query Frame = 0 

Query: 1   MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMA 60
           MD NN RPTQ    G+E  DWR QL PD R  IV KI ETLKRH  VSGQEGLSELRK+A
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDE 120
           VRFEEKI+T A+ Q DYL+KISLKML +E+ TQ PMGNSL    + NIE+ ELEY  EDE
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL----LVNIEN-ELEYSGEDE 118

[Close]
BLAST of IVF0020650 vs. NCBI nr
Match: XP_031744493.1 (mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis sativus] >KGN43730.2 hypothetical protein Csa_017280 [Cucumis sativus])

HSP 1 Score: 139 bits (350), Expect = 1.93e-39
Identity = 78/123 (63.41%), Postives = 87/123 (70.73%), Query Frame = 0 

Query: 1   MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMA 60
           MD NN RPTQ    G+E  DWR QL PD R  IV KI ETLKRH  VSGQEGLSELRK+A
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDE 120
           VRFEEKI+T A+ Q DYL+KISLKML +E+ TQ PMGNSL  N  N +    +EY  EDE
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENEL--GLIEYSGEDE 120

[Close]
BLAST of IVF0020650 vs. NCBI nr
Match: XP_031744496.1 (mediator of RNA polymerase II transcription subunit 15a isoform X4 [Cucumis sativus])

HSP 1 Score: 136 bits (342), Expect = 1.89e-38
Identity = 73/108 (67.59%), Postives = 80/108 (74.07%), Query Frame = 0 

Query: 1   MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMA 60
           MD NN RPTQ    G+E  DWR QL PD R  IV KI ETLKRH  VSGQEGLSELRK+A
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNI 105
           VRFEEKI+T A+ Q DYL+KISLKML +E+ TQ PMGNSL  N  N I
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENEI 108

[Close]
BLAST of IVF0020650 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-23
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 0 

Query: 1   MDTNNCRPT----QGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKM 60
           MD NN RP+    +  ++ GDWR QL PD R  IV KI ETLK+H   SG EG++ELR++
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINN 105
           A RFEEKI++ A  Q DYL+KIS+KML +E+ +Q+  G+S      NN
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANN 108

[Close]
BLAST of IVF0020650 vs. TAIR 10
Match: AT1G15790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 0 

Query: 16 GDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYL 75
          GDWR Q     RS IV KI ET  +       EG +ELRK+AVRFEEK++  AS Q +YL
Sbjct: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 76 KKISLKMLIIESVTQHPMGNS 97
          ++I +KML +E+ +Q+  G+S
Sbjct: 65 RQICMKMLNMETKSQNAAGSS 85

[Close]
BLAST of IVF0020650 vs. TAIR 10
Match: AT1G15790.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 0 

Query: 16 GDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYL 75
          GDWR Q     RS IV KI ET  +       EG +ELRK+AVRFEEK++  AS Q +YL
Sbjct: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 76 KKISLKMLIIESVTQHPMGNS 97
          ++I +KML +E+ +Q+  G+S
Sbjct: 65 RQICMKMLNMETKSQNAAGSS 85

The following BLAST results are available for this feature:
BLAST of IVF0020650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I1712.9e-2250.93Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
BLAST of IVF0020650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E0H33.9e-75100.00mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 ... [more]
A0A5D3C4Z13.5e-39100.00Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. mak... [more]
A0A6J1HI157.8e-3172.82mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1HR603.9e-3071.84mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A5D3C6P86.6e-3071.84Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. mak... [more]
BLAST of IVF0020650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901727.19.69e-100100.00PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis melo... [more]
KAA0031518.18.74e-53100.00mediator of RNA polymerase II transcription subunit 15a [Cucumis melo var. makuw... [more]
XP_031744494.17.56e-4165.85mediator of RNA polymerase II transcription subunit 15a isoform X2 [Cucumis sati... [more]
XP_031744493.11.93e-3963.41mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis sati... [more]
XP_031744496.11.89e-3867.59mediator of RNA polymerase II transcription subunit 15a isoform X4 [Cucumis sati... [more]
BLAST of IVF0020650 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15780.12.0e-2350.93unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.11.1e-1348.15unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.21.1e-1348.15unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036529Coactivator CBP, KIX domain superfamilyGENE3D1.10.246.20Coactivator CBP, KIX domaincoord: 17..94
e-value: 3.5E-17
score: 64.3
IPR036529Coactivator CBP, KIX domain superfamilySUPERFAMILY47040Kix domain of CBP (creb binding protein)coord: 16..86
IPR036546Mediator complex subunit 15, KIX domainPFAMPF16987KIX_2coord: 15..95
e-value: 2.7E-28
score: 97.8
NoneNo IPR availablePANTHERPTHR33137:SF27OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATEDcoord: 1..103
IPR044661Mediator of RNA polymerase II transcription subunit 15a/b/c-likePANTHERPTHR33137MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATEDcoord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020650.1IVF0020650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0003712 transcription coregulator activity