IVF0020540 (gene) Melon (IVF77) v1

Overview
NameIVF0020540
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr02: 75765 .. 76109 (-)
RNA-Seq ExpressionIVF0020540
SyntenyIVF0020540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTCAACTCGATTCATTACTCAGATGATGAGGATGATAAATATAAGCACAAGTGCAGTTATTCAGATGAGTGGCGGTACTCAATGAGGATGCGGGAGAAGAGGCAAATATTTCTGAGGAGCTATGAGTTCCAGTTGATGAACAGAAAGAGAAAGAAGAAGAAGAAGGAGAGGAGGAGGAGTAGTGTAGCCCACAACATGAAAACAAGTCTTCTGAAAATCAAAAGAGTTATATGGGTGAGGCTCAACAAGCTCAAGCTCAACATTAATAATCACTGCTTCCTTCCTTCCCCTTCACGTATACGTATAAGAACAACATTTTTTCGCCTCCACATTCGCTAG

mRNA sequence

ATGGGGTTCAACTCGATTCATTACTCAGATGATGAGGATGATAAATATAAGCACAAGTGCAGTTATTCAGATGAGTGGCGGTACTCAATGAGGATGCGGGAGAAGAGGCAAATATTTCTGAGGAGCTATGAGTTCCAGTTGATGAACAGAAAGAGAAAGAAGAAGAAGAAGGAGAGGAGGAGGAGTAGTGTAGCCCACAACATGAAAACAAGTCTTCTGAAAATCAAAAGAGTTATATGGGTGAGGCTCAACAAGCTCAAGCTCAACATTAATAATCACTGCTTCCTTCCTTCCCCTTCACGTATACGTATAAGAACAACATTTTTTCGCCTCCACATTCGCTAG

Coding sequence (CDS)

ATGGGGTTCAACTCGATTCATTACTCAGATGATGAGGATGATAAATATAAGCACAAGTGCAGTTATTCAGATGAGTGGCGGTACTCAATGAGGATGCGGGAGAAGAGGCAAATATTTCTGAGGAGCTATGAGTTCCAGTTGATGAACAGAAAGAGAAAGAAGAAGAAGAAGGAGAGGAGGAGGAGTAGTGTAGCCCACAACATGAAAACAAGTCTTCTGAAAATCAAAAGAGTTATATGGGTGAGGCTCAACAAGCTCAAGCTCAACATTAATAATCACTGCTTCCTTCCTTCCCCTTCACGTATACGTATAAGAACAACATTTTTTCGCCTCCACATTCGCTAG

Protein sequence

MGFNSIHYSDDEDDKYKHKCSYSDEWRYSMRMREKRQIFLRSYEFQLMNRKRKKKKKERRRSSVAHNMKTSLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRTTFFRLHIR
Homology
BLAST of IVF0020540 vs. ExPASy TrEMBL
Match: A0A0A0LYW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560840 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 102/116 (87.93%), Postives = 107/116 (92.24%), Query Frame = 0

Query: 1   MGFN-SIHYSDDEDDK-YKHKCSYSDEWRYSMRMREKRQIFLRSYEFQLMNRKRKKKKKE 60
           MGFN  IHYSDDEDD+ YKH+CSY DEWRYSMRMREKRQIFLRSYEFQLM+RKR KKKKE
Sbjct: 1   MGFNLMIHYSDDEDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE 60

Query: 61  RRRSSVAHNMKTSLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRI-RTTFFRLHI 114
           +RR SV HN+KT LLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRI RTTFFRLHI
Sbjct: 61  KRR-SVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHI 115

BLAST of IVF0020540 vs. NCBI nr
Match: KGN66002.1 (hypothetical protein Csa_007656 [Cucumis sativus])

HSP 1 Score: 185 bits (469), Expect = 3.78e-58
Identity = 102/116 (87.93%), Postives = 107/116 (92.24%), Query Frame = 0

Query: 1   MGFN-SIHYSDDEDDK-YKHKCSYSDEWRYSMRMREKRQIFLRSYEFQLMNRKRKKKKKE 60
           MGFN  IHYSDDEDD+ YKH+CSY DEWRYSMRMREKRQIFLRSYEFQLM+RKR KKKKE
Sbjct: 1   MGFNLMIHYSDDEDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE 60

Query: 61  RRRSSVAHNMKTSLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIR-TTFFRLHI 113
           +RRS V HN+KT LLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIR TTFFRLHI
Sbjct: 61  KRRS-VGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHI 115

BLAST of IVF0020540 vs. NCBI nr
Match: KAG6590523.1 (hypothetical protein SDJN03_15946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 50.4 bits (119), Expect = 3.71e-05
Identity = 41/91 (45.05%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 22  YSDEWRYSMRMREKRQIFLRSYEFQLMNRKRKKKKKERRRSSVAHNMKTSLLKIKRVIWV 81
           YSD+  YS  + EKRQ+FLRSY+F               + SV   +  SLLKIKRVIWV
Sbjct: 29  YSDQG-YSSTLMEKRQLFLRSYQFCT-------------KKSVPQKINASLLKIKRVIWV 88

Query: 82  RLNKLKLNINNHCFLPSPSRIRIRTTFFRLH 112
           RL  L L+    C L + SR R R +  RLH
Sbjct: 89  RLKNLLLH---SCRLRNASRSRRRRSV-RLH 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYW01.5e-4387.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560840 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN66002.13.78e-5887.93hypothetical protein Csa_007656 [Cucumis sativus][more]
KAG6590523.13.71e-0545.05hypothetical protein SDJN03_15946, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020540.1IVF0020540.1mRNA