IVF0020505 (gene) Melon (IVF77) v1

Overview
NameIVF0020505
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 25-like
Locationchr03: 21056259 .. 21057871 (-)
RNA-Seq ExpressionIVF0020505
SyntenyIVF0020505
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATACACAAAACAAAGTTAAAGATGAGTGTGTCGTATTTATTCTTCTCAGTATAAAGCAAACACAGCTGGGTTCCCTCCATCTCACGTTTGAAGCCATTATTATTATTTTTTTTTCTTTTTTGTTTTCTCAATCTCTCTAGGTTCGAGAAAGTGCAATAGAATCCTAAAGAGAAAACCCAATAACACCAAACCACCTTTGAATAAAACCCTTTGTTCAACCAAAATATATAACACAAAACAAAACTTCACTTCAAACAAATTACACCAATTTCTTTTCTCTCTTTTCTTCTCTCAACATAACCCAAAATCAAAATCCTGTCATGTAGCGAGTTTAAAGAGAAAGAGAGGGCAGAGAAAATGACTTGTTATTGTTGGTGTTCTTCTTGTAAGTTTGGTTCACTTCTTGTTATGGCTTTTATTTGGCTTTTGTTGGCTAATGGTTCGTGTCAAAGGAAAGAACCTGTCGTGGTGGGGAAGGTGACGACAGCGATGGGAGATGAATTCAGTGGAGTTTTCAAAAAGACGACGGTGGTGGTGGGTGGCGGGAAGGTTGCTGATCATCCAGAGTGGCATCTCAACTACATGAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCTATCCATAATCGGTACGACGATGTTTTTTTTAGTTCAACTATATAAGTGAGAATAGAGGTTTGAACTTTCGACGATTTTAAGAGCAATGATCAAATTACACCTAATTCCATGCTCCTGTTTTTTAAAAAGAAAAATAAATTGGCACGTGAAAATTTACGAGTTTTTTCAAATCGAAATTAATTATAATGTCTTTTAATTAGCAATTGAGTTATGGTAAACGTTATGTGGTTGGTACATGTTTGAAATCTTATCTTGTTTTTGTTGTTGTTATTATTATTATTATTATTTGCTTCACTCAAAAGAAAAAAAAAGTGGGAAATTTAAGAAAGTATATTTGATAGATTTAGAGAGAGAGAGAGAAATGAGAAATAGAAAAAGAAAGATAGGAGTGGGGGAGATAAAAAGTTGAAAATTTAATAACTTTGCCTTTTAAAACTGTTACATTGAGTTTCTTTTAGCTTAAAAAGGGTGTCATTTAAAGTCACTCTTGGTTGAAGGTGAGAGAGACACAAACATCTTTAAAACCACAGTAAATAAAAGTATGTGTTTTGTGTGTACTTCAATATATTCCATCCCCCCCTTTTCCTTAACCTTAATTTATATCTCTTTATCCATATATATCACTTTGGTCTACGTAGTTTAAAGTATTTTAATTCAAAAATACATAATTATAATATATTTATTAGATACATGAAGATCATCACTCAAGTTTATATTTTTGGTTTCTTGTTTCTGTACGTAGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAGCCCTTAAGAAAGAAACTAAATTAAAAAGCTTTTGTAACAAATTGGGCTTTCAAGATCATGACACCAAGATGCATCGTCTGTGCTATCTTGTATGTATTAACTTTAGGTATTAAATGATGAAAAAACTTATCGGATCCCGATTTTTCCTTCAGAAATTTTAATTAGGATCCTTTCGATAATTTTTTTGTTTTTAGCTTTAAACATCCA

mRNA sequence

ATGAAAATACACAAAACAAAGTTAAAGATGAGTGTGTCGTATTTATTCTTCTCAGTATAAAGCAAACACAGCTGGGTTCCCTCCATCTCACGTTTGAAGCCATTATTATTATTTTTTTTTCTTTTTTGTTTTCTCAATCTCTCTAGGTTCGAGAAAGTGCAATAGAATCCTAAAGAGAAAACCCAATAACACCAAACCACCTTTGAATAAAACCCTTTGTTCAACCAAAATATATAACACAAAACAAAACTTCACTTCAAACAAATTACACCAATTTCTTTTCTCTCTTTTCTTCTCTCAACATAACCCAAAATCAAAATCCTGTCATGTAGCGAGTTTAAAGAGAAAGAGAGGGCAGAGAAAATGACTTGTTATTGTTGGTGTTCTTCTTGTAAGTTTGGTTCACTTCTTGTTATGGCTTTTATTTGGCTTTTGTTGGCTAATGGTTCGTGTCAAAGGAAAGAACCTGTCGTGGTGGGGAAGGTGACGACAGCGATGGGAGATGAATTCAGTGGAGTTTTCAAAAAGACGACGGTGGTGGTGGGTGGCGGGAAGGTTGCTGATCATCCAGAGTGGCATCTCAACTACATGAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCTATCCATAATCGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAGCCCTTAAGAAAGAAACTAAATTAAAAAGCTTTTGTAACAAATTGGGCTTTCAAGATCATGACACCAAGATGCATCGTCTGTGCTATCTTGTATGTATTAACTTTAGGTATTAAATGATGAAAAAACTTATCGGATCCCGATTTTTCCTTCAGAAATTTTAATTAGGATCCTTTCGATAATTTTTTTGTTTTTAGCTTTAAACATCCA

Coding sequence (CDS)

ATGACTTGTTATTGTTGGTGTTCTTCTTGTAAGTTTGGTTCACTTCTTGTTATGGCTTTTATTTGGCTTTTGTTGGCTAATGGTTCGTGTCAAAGGAAAGAACCTGTCGTGGTGGGGAAGGTGACGACAGCGATGGGAGATGAATTCAGTGGAGTTTTCAAAAAGACGACGGTGGTGGTGGGTGGCGGGAAGGTTGCTGATCATCCAGAGTGGCATCTCAACTACATGAGCAAAAGAAGAGTTCCTAATGGTCCTGATCCTATCCATAATCGGAGAGCAGGAAACTCTGGAAGACCACCAGGCAAGGCTTAG

Protein sequence

MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVGGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Homology
BLAST of IVF0020505 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.4e-04
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 72  HLNYMSKRRVPNGPDPIHNRRAGNSGRPP 101
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

BLAST of IVF0020505 vs. ExPASy TrEMBL
Match: A0A5A7TRB3 (Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00170 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.3e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of IVF0020505 vs. ExPASy TrEMBL
Match: A0A1S3CMA2 (uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.3e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of IVF0020505 vs. ExPASy TrEMBL
Match: A0A0A0KJ25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 0

Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCY  CSSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCY--CSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60

Query: 61  G---GGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
           G   GGKV DHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

BLAST of IVF0020505 vs. ExPASy TrEMBL
Match: A0A6J1G3Y8 (uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC111450563 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 63/96 (65.62%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 9   SCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGKVAD 68
           SCK  ++ VM FIWLLL NGS QR + V  G  TT    +F G+ K+  VV G GGK   
Sbjct: 7   SCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGGKDVV 66

Query: 69  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
             EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 67  RSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of IVF0020505 vs. ExPASy TrEMBL
Match: A0A6J1KBR7 (uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-23
Identity = 62/96 (64.58%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 9   SCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGKVAD 68
           SCK  ++ VM FIWLLL NGS QR + V  G  TT    +F G+ K+  VV G GGK   
Sbjct: 7   SCK--AMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTAAQFGGISKEMEVVGGRGGKDVV 66

Query: 69  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104
             EWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 67  RSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of IVF0020505 vs. NCBI nr
Match: XP_008464794.1 (PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo] >KAA0045398.1 Clavata3/esr-related 26, putative isoform 1 [Cucumis melo var. makuwa] >TYK11343.1 Clavata3/esr-related 26, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (559), Expect = 2.96e-72
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV
Sbjct: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60

Query: 61  GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103
           GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

BLAST of IVF0020505 vs. NCBI nr
Match: XP_004146759.1 (uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical protein Csa_003437 [Cucumis sativus])

HSP 1 Score: 189 bits (479), Expect = 4.91e-60
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 0

Query: 1   MTCYCWCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVV 60
           MTCYC  SSCKFGSLL+MAFIWLLLANGSCQRKEPVVVGKVTTA GDE SG+ K+TTV V
Sbjct: 1   MTCYC--SSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAV 60

Query: 61  GGG---KVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103
           GGG   KV DHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGGRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

BLAST of IVF0020505 vs. NCBI nr
Match: XP_038886261.1 (uncharacterized protein LOC120076488 [Benincasa hispida])

HSP 1 Score: 128 bits (321), Expect = 6.74e-36
Identity = 71/107 (66.36%), Postives = 78/107 (72.90%), Query Frame = 0

Query: 5   CWCSSCKFG-SLLVMAFIWLLLANGSCQRKEPVVVGK------VTTAMGDEFSGVFKKTT 64
           C+  SCK G SL VM FI+LLL NGS QR++PV          +T  M  EFSG+ K+  
Sbjct: 3   CYSPSCKLGNSLAVMVFIFLLLVNGSHQRRQPVAAEMEKATVTITATMTAEFSGISKEMK 62

Query: 65  VVVGG-GKVADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103
           VV GG GKV  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 63  VVHGGRGKVV-HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 108

BLAST of IVF0020505 vs. NCBI nr
Match: XP_022946527.1 (uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (305), Expect = 1.45e-33
Identity = 63/96 (65.62%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 9   SCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGKVAD 68
           SCK  ++ VM FIWLLL NGS QR + V  G  TT    +F G+ K+  VV G GGK   
Sbjct: 7   SCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGGKDVV 66

Query: 69  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103
             EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 67  RSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of IVF0020505 vs. NCBI nr
Match: XP_023521565.1 (uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.1 uncharacterized protein LOC111805292 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120 bits (300), Expect = 8.36e-33
Identity = 62/96 (64.58%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 9   SCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGKVAD 68
           SCK  ++ VM FIWLLL NGS QR + V  G +T     +F G+ K+  VV G GGK   
Sbjct: 7   SCK--AMAVMGFIWLLLVNGSHQRGQSVATGMMTITTAAQFGGISKEMEVVGGRGGKDVV 66

Query: 69  HPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103
             EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 67  RSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

BLAST of IVF0020505 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 53.9 bits (128), Expect = 8.8e-08
Identity = 37/95 (38.95%), Postives = 52/95 (54.74%), Query Frame = 0

Query: 12  FGSLLVMAFIWLLLANGSC--QRKEPVVVGKVTTAMGDEFSGVFKKTTVVVGGGKVADHP 71
           F +L  +  + LL+ +       KE     ++TTA+    S   +    +  G +  D  
Sbjct: 13  FRTLFTVGVVTLLMIDAFVLQNNKEDDKTKEITTAVNMNNSDAKEIQQELEDGSRNDD-- 72

Query: 72  EWHLNYM-SKRRVPNGPDPIHNRRAGNSGRPPGKA 104
              L+Y+ SKR+VP GPDPIHNRRAGNS RPPG+A
Sbjct: 73  ---LSYVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

BLAST of IVF0020505 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 72  HLNYMSKRRVPNGPDPIHNRRAGNSGRPP 101
           +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 51  NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8LFL44.4e-0468.97CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P... [more]
Match NameE-valueIdentityDescription
A0A5A7TRB36.3e-54100.00Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CMA26.3e-54100.00uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=... [more]
A0A0A0KJ251.2e-4487.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1[more]
A0A6J1G3Y81.8e-2465.63uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
A0A6J1KBR71.5e-2364.58uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028... [more]
Match NameE-valueIdentityDescription
XP_008464794.12.96e-72100.00PREDICTED: uncharacterized protein LOC103502597 [Cucumis melo] >KAA0045398.1 Cla... [more]
XP_004146759.14.91e-6087.74uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical ... [more]
XP_038886261.16.74e-3666.36uncharacterized protein LOC120076488 [Benincasa hispida][more]
XP_022946527.11.45e-3365.63uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3... [more]
XP_023521565.18.36e-3364.58uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.... [more]
Match NameE-valueIdentityDescription
AT1G69970.28.8e-0838.95CLAVATA3/ESR-RELATED 26 [more]
AT3G28455.13.1e-0568.97CLAVATA3/ESR-RELATED 25 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..103
NoneNo IPR availablePANTHERPTHR34277:SF2CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 1..103
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020505.1IVF0020505.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment