IVF0020504 (gene) Melon (IVF77) v1

Overview


Name	IVF0020504
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Location	chr09: 19367430 .. 19368355 (+)
RNA-Seq Expression	IVF0020504
Synteny	IVF0020504

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAGAAAAAAAAAAAAAAAAAAAACAAAACCCCCAATTCCCAACGCTCTCAAAAATCCTCTCCGAATTCCCTTCTTCAATCATTACAAAATTTTTCAAATTCCATTCCAAAACTCCATTGATCGATTCAATAATTCTTCTCCCCCTGAGCTTTCTCCATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACGCACTACTGCGGCGTTGCTCAGAGTCCCACTTTAAGCCCTAGGACCAGTCCTCTCGTTCACCTCCGCCGCCGGAAAACCACTCTTCGGATGCTTCTCACTCGGAATTCCGGCCGTCGGTCTCCTCGCCGCCCCCGCGCCTTACCGGAGAATAAGAAGAGAGACGACCATAAGGGTTTGTCGCGGAGTAACACGTTGAAGGATTTGTTCGTTTCGTCTCCACCGTATGTTGGGACTGACTGTGATGTTCACGAGACGGCGGTCACGGCTCCAACCCAGAACGCAACTCCAGTTTGTGAGAAGGAGAAGGAGGAGGGTCGCGTTGGATCGCCCGGTTGGAATCCCGGTTCTCCTAGACCGGGTTGGACCGGTTTCCGATATAAATACTTGCTTCGGAAAACTTGGCGGCCGGTGCTCGTCGGAATCCCCGAGTAATGGATGATCTTAAACATCTTTTAATTAATTTAAAAATATATCTAATCTAATATTTCTATGTTTTTTTTAAGTATAGTTTTCGATCTTTTACTTAAAATAGGGATGGGGGAAGGATTAAGATCTTAATCAAGTGGGTTTGGGGAAATAATAATTTGTTACTATGGAAAATTATGAATAGATTTCCCATGACTGGGAATTTGCTTATTTTTCTGTCAAATTTTACGTTTGATTTTATTTTTCTAATCATATATTAAATTAGTCAAATTAACTTTATACAATTTGTACTTCCAAATTTAAG

mRNA sequence

CAAAAAGAAAAAAAAAAAAAAAAAAAACAAAACCCCCAATTCCCAACGCTCTCAAAAATCCTCTCCGAATTCCCTTCTTCAATCATTACAAAATTTTTCAAATTCCATTCCAAAACTCCATTGATCGATTCAATAATTCTTCTCCCCCTGAGCTTTCTCCATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACGCACTACTGCGGCGTTGCTCAGAGTCCCACTTTAAGCCCTAGGACCAGTCCTCTCGTTCACCTCCGCCGCCGGAAAACCACTCTTCGGATGCTTCTCACTCGGAATTCCGGCCGTCGGTCTCCTCGCCGCCCCCGCGCCTTACCGGAGAATAAGAAGAGAGACGACCATAAGGGTTTGTCGCGGAGTAACACGTTGAAGGATTTGTTCGTTTCGTCTCCACCGTATGTTGGGACTGACTGTGATGTTCACGAGACGGCGGTCACGGCTCCAACCCAGAACGCAACTCCAGTTTGTGAGAAGGAGAAGGAGGAGGGTCGCGTTGGATCGCCCGGTTGGAATCCCGGTTCTCCTAGACCGGGTTGGACCGGTTTCCGATATAAATACTTGCTTCGGAAAACTTGGCGGCCGGTGCTCGTCGGAATCCCCGAGTAATGGATGATCTTAAACATCTTTTAATTAATTTAAAAATATATCTAATCTAATATTTCTATGTTTTTTTTAAGTATAGTTTTCGATCTTTTACTTAAAATAGGGATGGGGGAAGGATTAAGATCTTAATCAAGTGGGTTTGGGGAAATAATAATTTGTTACTATGGAAAATTATGAATAGATTTCCCATGACTGGGAATTTGCTTATTTTTCTGTCAAATTTTACGTTTGATTTTATTTTTCTAATCATATATTAAATTAGTCAAATTAACTTTATACAATTTGTACTTCCAAATTTAAG

Coding sequence (CDS)

ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACGCACTACTGCGGCGTTGCTCAGAGTCCCACTTTAAGCCCTAGGACCAGTCCTCTCGTTCACCTCCGCCGCCGGAAAACCACTCTTCGGATGCTTCTCACTCGGAATTCCGGCCGTCGGTCTCCTCGCCGCCCCCGCGCCTTACCGGAGAATAAGAAGAGAGACGACCATAAGGGTTTGTCGCGGAGTAACACGTTGAAGGATTTGTTCGTTTCGTCTCCACCGTATGTTGGGACTGACTGTGATGTTCACGAGACGGCGGTCACGGCTCCAACCCAGAACGCAACTCCAGTTTGTGAGAAGGAGAAGGAGGAGGGTCGCGTTGGATCGCCCGGTTGGAATCCCGGTTCTCCTAGACCGGGTTGGACCGGTTTCCGATATAAATACTTGCTTCGGAAAACTTGGCGGCCGGTGCTCGTCGGAATCCCCGAGTAA

Protein sequence

MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALPENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVGSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE

Homology

[Close]

BLAST of IVF0020504 vs. ExPASy TrEMBL
Match: A0A5D3BMD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00090 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.1e-84
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP
Sbjct: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120
           ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG
Sbjct: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 156
           SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155

[Close]

BLAST of IVF0020504 vs. ExPASy TrEMBL
Match: A0A1S3CSY3 (uncharacterized protein LOC103504599 OS=Cucumis melo OX=3656 GN=LOC103504599 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.1e-84
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP
Sbjct: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120
           ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG
Sbjct: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 156
           SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155

[Close]

BLAST of IVF0020504 vs. ExPASy TrEMBL
Match: A0A0A0KPK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576820 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 145/155 (93.55%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR R+LP
Sbjct: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR-RSLP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120
           ENK RDD KGLSRSNTLKDLFVSSPPY+GTDCDVH+TAVTAPT+N TPVCEKEKEEG VG
Sbjct: 61  ENKNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 156
           SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]

BLAST of IVF0020504 vs. ExPASy TrEMBL
Match: A0A6J1HGM7 (uncharacterized protein LOC111463373 OS=Cucurbita moschata OX=3662 GN=LOC111463373 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.8e-58
Identity = 121/155 (78.06%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRR RALP
Sbjct: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRR-RALP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120
           + KKRDDHK LSRSNTLKDLFVSSPPY  +D +++ET   AP +N TPVC   +E+G +G
Sbjct: 61  D-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVC--REEDGEIG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 156
              W+PGSPRPGWTGFR+KYLLRKTWRP+L  IPE
Sbjct: 121 PTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE 150

[Close]

BLAST of IVF0020504 vs. ExPASy TrEMBL
Match: A0A6J1DFV6 (uncharacterized protein LOC111020064 OS=Momordica charantia OX=3673 GN=LOC111020064 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.3e-58
Identity = 125/156 (80.13%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR RALP
Sbjct: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR-RALP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTA-PTQNATPVCEKEKEEGRV 120
           + K+  DH  L+RSNTLKDLFVSSPPY G D ++ E A TA  + N  PVC KEKE+G V
Sbjct: 61  DKKR--DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATASPNLIPVC-KEKEDGEV 120

Query: 121 GSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 156
           GS GW PGSPRP WTGFRYKYLLRKTWRPVL GIPE
Sbjct: 121 GSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE 151

[Close]

BLAST of IVF0020504 vs. NCBI nr
Match: XP_008467191.1 (PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo] >TYK00268.1 uncharacterized protein E5676_scaffold1728G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 320 bits (820), Expect = 2.21e-110
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP
Sbjct: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120
           ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG
Sbjct: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155
           SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155

[Close]

BLAST of IVF0020504 vs. NCBI nr
Match: XP_011655483.1 (uncharacterized protein LOC105435544 [Cucumis sativus] >KGN51540.1 hypothetical protein Csa_008562 [Cucumis sativus])

HSP 1 Score: 292 bits (747), Expect = 2.80e-99
Identity = 145/155 (93.55%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR R+LP
Sbjct: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR-RSLP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120
           ENK RDD KGLSRSNTLKDLFVSSPPY+GTDCDVH+TAVTAPT+N TPVCEKEKEEG VG
Sbjct: 61  ENKNRDDRKGLSRSNTLKDLFVSSPPYLGTDCDVHQTAVTAPTRNVTPVCEKEKEEGHVG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155
           SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE
Sbjct: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 153

[Close]

BLAST of IVF0020504 vs. NCBI nr
Match: XP_038875200.1 (uncharacterized protein LOC120067717 [Benincasa hispida])

HSP 1 Score: 263 bits (673), Expect = 5.02e-88
Identity = 138/155 (89.03%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSP R RALP
Sbjct: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPHR-RALP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120
           E KKRDDHK LSRSNTLKDLFVSSPPYV TD D+HETAV APT++AT VC KEKE+G VG
Sbjct: 61  E-KKRDDHKELSRSNTLKDLFVSSPPYVATDGDIHETAVAAPTRDATTVC-KEKEDGEVG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155
           S GWNPGSPRPGWTGFRYKYLLRKTWRPVL GIPE
Sbjct: 121 SAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE 151

[Close]

BLAST of IVF0020504 vs. NCBI nr
Match: XP_023513243.1 (uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243 bits (620), Expect = 5.80e-80
Identity = 124/155 (80.00%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRR RALP
Sbjct: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRR-RALP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120
           + KKRDDHK LSRSNTLKDLFVSSPPY  ++C+++ET   AP +N TPVC +E  +G +G
Sbjct: 61  D-KKRDDHKDLSRSNTLKDLFVSSPPYDESECEINETVAAAPIRNVTPVCREE--DGEIG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155
             GW+PGSPRPGWTGFRYKYLLRKTWRP+L GIPE
Sbjct: 121 PTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 150

[Close]

BLAST of IVF0020504 vs. NCBI nr
Match: KAG7032525.1 (hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240 bits (612), Expect = 9.61e-79
Identity = 124/155 (80.00%), Postives = 135/155 (87.10%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPRALP 60
           MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRR RALP
Sbjct: 1   MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRR-RALP 60

Query: 61  ENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEGRVG 120
           + KKRDDHK LSRSNTLKDLFVSSPPY  +D +++ET   AP +N TPVC +E  +G +G
Sbjct: 61  D-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREE--DGEIG 120

Query: 121 SPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 155
             GW+PGSPRPGWTGFRYKYLLRKTWRP+L GIPE
Sbjct: 121 PTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE 150

[Close]

BLAST of IVF0020504 vs. TAIR 10
Match: AT1G66890.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 73/167 (43.71%), Postives = 89/167 (53.29%), Query Frame = 0


Query: 3   SLLKFKLLPTHYCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGR-RSPRRPRALPE 62
           SL KFKLL TH   VA+SPT     SP++HLRRRK TLR+LLTR+S R R P     + E
Sbjct: 2   SLQKFKLLATHCSTVAESPT----RSPVIHLRRRK-TLRLLLTRSSDRWRLPEIQNNVDE 61

Query: 63  NKKRDDHKGLSRSNTLKDLFVSSPPY----------VGTDCDV---HETAVTAPTQNATP 122
           +KK D    +  S  L DLFVSSPP+           GT  +V    +  V   + NA  
Sbjct: 62  SKKTDKRGKIRSSRKLGDLFVSSPPFEESGGGGGGDKGTKMEVEMERDVPVNGVSNNA-- 121

Query: 123 VCEKEKEEGRVGSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 156
                 EE      G+N GS RP  +      LLR++WRPVLV IPE
Sbjct: 122 ---GFGEEITARRVGFN-GSVRPMSSVTLRCRLLRRSWRPVLVTIPE 157

[Close]

BLAST of IVF0020504 vs. TAIR 10
Match: AT5G16200.1 (50S ribosomal protein-related )

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 64/173 (36.99%), Postives = 85/173 (49.13%), Query Frame = 0


Query: 1   MASLLKFKLLPTH---YCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPR 60
           ++ L KFKL   H       A SPT+SP  SP+ +LRRRK TLRML  ++S  R     +
Sbjct: 3   LSRLHKFKLFAAHRSLEASTAGSPTMSPTKSPVFNLRRRK-TLRMLFDKSSDSRRRNLRQ 62

Query: 61  ALPE---------NKKRDDHKGLSRSNTLKDLFVS--SPPYVGTDCDV----HETAVTAP 120
            L E         NKKR +H+   R   L++L V+  SPPY G + D+     E +  +P
Sbjct: 63  ILEESPESDGNSGNKKRGNHRATRRK--LRELLVTSPSPPYKGRE-DIDGIGEERSEISP 122

Query: 121 TQNATPVCEKEKEEGRVGSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 156
               +    +E    R GS G            FR + +LRK WRPVLV IPE
Sbjct: 123 LNVTSNGDGRELTARRFGSSG--------SVQSFRLR-ILRKPWRPVLVSIPE 162

[Close]

BLAST of IVF0020504 vs. TAIR 10
Match: AT1G68430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 61/158 (38.61%), Postives = 76/158 (48.10%), Query Frame = 0


Query: 1   MASLLKFKLLPTHYCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRPR 60
           MA+L +FK L T  CGV AQSPT   SPRTSPLV LRR+KTTL+MLL+  S  R  ++P 
Sbjct: 1   MATLQRFKFLGTQ-CGVAAQSPTRSPSPRTSPLVQLRRKKTTLKMLLSLASPSRREQQPL 60

Query: 61  ALPENKKRDDHKGLSRSNTLKDLFVSSPPYVGTDCDVHETAVTAPTQNATPVCEKEKEEG 120
                     HK ++    LKDLFVSS        +          +    +  K     
Sbjct: 61  I------HHHHKDVA-GRKLKDLFVSSSSAEEEQEEDERPKGKTKEEVLAAMAAKLNAAS 120

Query: 121 RVGSPGWNPGSPRPGWTGFRYKYLLRKTWRPVLVGIPE 156
           R+           P W GF  K LL++ WRP L  I E
Sbjct: 121 RLQC---ESADAAPVWFGFS-KRLLQRAWRPKLGTIHE 146

The following BLAST results are available for this feature:

BLAST of IVF0020504 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BMD8	5.1e-84	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CSY3	5.1e-84	100.00	uncharacterized protein LOC103504599 OS=Cucumis melo OX=3656 GN=LOC103504599 PE=...	[more]
A0A0A0KPK6	1.5e-75	93.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576820 PE=4 SV=1	[more]
A0A6J1HGM7	4.8e-58	78.06	uncharacterized protein LOC111463373 OS=Cucurbita moschata OX=3662 GN=LOC1114633...	[more]
A0A6J1DFV6	8.3e-58	80.13	uncharacterized protein LOC111020064 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of IVF0020504 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467191.1	2.21e-110	100.00	PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo] >TYK00268.1 uncha...	[more]
XP_011655483.1	2.80e-99	93.55	uncharacterized protein LOC105435544 [Cucumis sativus] >KGN51540.1 hypothetical ...	[more]
XP_038875200.1	5.02e-88	89.03	uncharacterized protein LOC120067717 [Benincasa hispida]	[more]
XP_023513243.1	5.80e-80	80.00	uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]	[more]
KAG7032525.1	9.61e-79	80.00	hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of IVF0020504 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66890.1	2.7e-16	43.71	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G16200.1	2.6e-11	36.99	50S ribosomal protein-related	[more]
AT1G68430.1	2.2e-10	38.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..74
None	No IPR available	PANTHER	PTHR34542:SF1	OS08G0359900 PROTEIN	coord: 1..155
None	No IPR available	PANTHER	PTHR34542	OS08G0359900 PROTEIN	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020504.1	IVF0020504.1	mRNA