IVF0020492 (gene) Melon (IVF77) v1

Overview


Name	IVF0020492
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag protease polyprotein
Location	chr05: 15883943 .. 15884143 (+)
RNA-Seq Expression	IVF0020492
Synteny	IVF0020492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTGAGGGCACATGAGAATGATGACCTGTCGAAGATGTCATGGAAGGAAGCATCCACAAGGCAGAAGAGAAAGGCTGAGCAACAGCCTGCTGATATCCCATGGAGGACTTTAAGATCATCATTCAGGTTTCTATTGCAAGAGGGGCACGATGTCGACAAATGCCCTCTCAGATCTATTAGAGTTATTCTAAACTAG

mRNA sequence

ATGGACGTGAGGGCACATGAGAATGATGACCTGTCGAAGATGTCATGGAAGGAAGCATCCACAAGGCAGAAGAGAAAGGCTGAGCAACAGCCTGCTGATATCCCATGGAGGACTTTAAGATCATCATTCAGGTTTCTATTGCAAGAGGGGCACGATGTCGACAAATGCCCTCTCAGATCTATTAGAGTTATTCTAAACTAG

Coding sequence (CDS)

ATGGACGTGAGGGCACATGAGAATGATGACCTGTCGAAGATGTCATGGAAGGAAGCATCCACAAGGCAGAAGAGAAAGGCTGAGCAACAGCCTGCTGATATCCCATGGAGGACTTTAAGATCATCATTCAGGTTTCTATTGCAAGAGGGGCACGATGTCGACAAATGCCCTCTCAGATCTATTAGAGTTATTCTAAACTAG

Protein sequence

MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSSFRFLLQEGHDVDKCPLRSIRVILN

Homology

[Close]

BLAST of IVF0020492 vs. ExPASy TrEMBL
Match: A0A5D3DZJ0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00260 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.8e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1  MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSSF 44
          MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSSF
Sbjct: 1  MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSSF 43

[Close]

BLAST of IVF0020492 vs. NCBI nr
Match: TYK28660.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 5.25e-20
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1  MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSSF 43
          MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSSF
Sbjct: 1  MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSSF 43

[Close]

BLAST of IVF0020492 vs. NCBI nr
Match: KAA0045611.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYK02645.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 1.56e-04
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 1   MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSS--FRFLLQEGHDVDKCPL 60
           +D+   E  + SK++ + +++ Q+RK EQQP  +P R  RS   FR   QEGH  D+CP+
Sbjct: 277 VDLSLQERANSSKVAGRGSTSGQERKGEQQPISVPQRNFRSGGEFRRFQQEGHTADRCPM 336

[Close]

BLAST of IVF0020492 vs. NCBI nr
Match: TYJ95735.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 4.06e-04
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 1   MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSSFRF--LLQEGHDVDKCPL 59
           +D+   E  + SK + + +++ QKRKAEQQP  +P R  RS   F    QEGH  D+CP+
Sbjct: 101 VDLSLQERANSSKGAGRGSTSGQKRKAEQQPISVPLRNFRSGGEFCRFQQEGHTADRCPM 160

[Close]

BLAST of IVF0020492 vs. NCBI nr
Match: KAA0055515.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 4.06e-04
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 1   MDVRAHENDDLSKMSWKEASTRQKRKAEQQPADIPWRTLRSSFRF--LLQEGHDVDKCPL 59
           +D+   E  + SK + + +++ QKRKAEQQP  +P R  RS   F    QEGH  D+CP+
Sbjct: 101 VDLSLQERANSSKGAGRGSTSGQKRKAEQQPISVPLRNFRSGGEFCRFQQEGHTADRCPM 160

The following BLAST results are available for this feature:

BLAST of IVF0020492 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZJ0	4.8e-15	100.00	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of IVF0020492 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28660.1	5.25e-20	100.00	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0045611.1	1.56e-04	41.27	gag protease polyprotein [Cucumis melo var. makuwa] >TYK02645.1 gag protease pol...	[more]
TYJ95735.1	4.06e-04	42.62	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055515.1	4.06e-04	42.62	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020492 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020492.1	IVF0020492.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity