IVF0020443 (gene) Melon (IVF77) v1

Overview
NameIVF0020443
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTRASH domain-containing protein
Locationchr04: 5029549 .. 5031739 (-)
RNA-Seq ExpressionIVF0020443
SyntenyIVF0020443
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCGGCGCTCGAGGTTCCTACTCGACACCGTCTTAGCGGCTCCCGACTCACGGTTAACCCTTAGCTGCCACCGTCTCTTCCTTCCGACGAAGTCACCGCCGTTCTCTTCTTCTTTCACCCTCTCGCCTAACTCAGTGGTTCAGCCCTTAGCGCCATTGGTGAGATCGCACCCAATGTTTTATTTATTTGTTTGTTAGGTTATTGTTGCTTTATTCTCTGCACCCACGGAGAAGAAAGTGAAGAACTGTTTGTTTTCTTCATTGGAGTTCTTCAAATTATGTTAATGAAAATATAAAAACATTGTATACCTCACAAATTAATAACATAAATAGATTGAATTTATGAATTAAAAGGTAGCAAAATACATATTAGTAGAGATTTTTCTCTGTTCCAGTTGATCTTCTGAATGTATGACTTCCAGTTCATTTGATTATCTCATTCGTGCCTTCTGTTGCAGGAAATTTAGGGTTTGTTTTTTGCTGAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAATTTGTTCGCAATGATGCGACGGTAAGGACGTAGGTTGCGAACTTCCACGATTTGTATGCTTTGTTCTGCACATTGCTTGTATGTTCTTACTTGCTAATGCTTAGGGAGTGCTACATGATTCTGTTCTATCTTAGGCTTGTTTATGATGCATATTTAGGCTATAGAAATAAATAGTTGTTCTTGGCTTGCTGTGCTTTTAAATTAGTAATGGTGGGTGGTGTCCCATGTTCCTATTTCCTAAAGTGATTTTTTCTGCAGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAAGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGTAAACTTTCTTCATTTATTTGTGGAGCAAATTCGATTTTGTAAGTACAAACTTCCTATTATCTTCGTCCTATTAATTGTTGTTTCATTTGTATTATCCAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAATCGAGACATATTGCACGCAGGTTGAAAAAATTTTCCATTCCCATCTGGTATATGCCTATATATTTTGCGAATACTATTTCAGTTGTAACTCAGGATCATTCACATTTGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAAGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAACTCAAAGTCAAAGTGTTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGAGTTTGTCAATCTTATATCACTATATCAAATATTTTATGTAGTAGTTACGTTTTCACATATCTTGAACTGTCAGAGTTCTTGTGCAGTGGTAGATTATCTTTGTTCGTCCTCACGCAAGAATGGTTGTCATGTACAATTTCATTTGTAGACAGATTTCTAAAAATTTTATTGAATCATTGCCAACTGGTTTTTGCGGTTTTGTTTGTTTGAGGCTATACAGTGGTTTGAGGCAATGCCCAATTTTTTGTTTTTTATGGTTCCTTTTTTATATGGTTCTTTTCTTTTTCATCCATCGATAAGAAGTTTGTTGTATTTTGTTTAGTAGTCCATAAGATAGATCTTAAGGGGAACTTACCTCCAGCCGACTTTCTATTGTGCATGCCCTTAACTTCTGTTTACCTTCCTCTTACTTTGAAGTAATAACATAGATTAACAGACGATTAAAGAGATGAGATACCTTGAATCAAAGTCGGAACACAGTTTTTAGATTGTGCCAATGGAAGGTTTGGGAGAGCGGGATGATGGAGCTCAACAAAGAAAGGAGCTTGCAAAACGTTGCCAGGAAGCAAAGGGTTGGGCCAGCAAGCTAGAATCCTACCAAGTCCTTCGTGCATTAGAGAGTTAAAGGTACCACCAGTGGAGGTTTTTGTGCAAAGGATAATGTACATACAAGCACATCTCTAACATCTAAATTTTGAATTTTCACATCTACTATTTCGATTAACACCCATTCATGTGATCTAATAAGTTTGAATATTAAATAAGGG

mRNA sequence

CCCGGCGCTCGAGGTTCCTACTCGACACCGTCTTAGCGGCTCCCGACTCACGGTTAACCCTTAGCTGCCACCGTCTCTTCCTTCCGACGAAGTCACCGCCGTTCTCTTCTTCTTTCACCCTCTCGCCTAACTCAGTGGTTCAGCCCTTAGCGCCATTGGAAATTTAGGGTTTGTTTTTTGCTGAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAATTTGTTCGCAATGATGCGACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAAGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAATCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAAGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAACTCAAAGTCAAAGTGTTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGAGTTTGTCAATCTTATATCACTATATCAAATATTTTATGTAGTAGTTACGTTTTCACATATCTTGAACTGTCAGAGTTCTTGTGCAGTGGTAGATTATCTTTGTTCGTCCTCACGCAAGAATGGTTGTCATGTACAATTTCATTTGTAGACAGATTTCTAAAAATTTTATTGAATCATTGCCAACTGGTTTTTGCGGTTTTGTTTGTTTGAGGCTATACAGTGGTTTGAGGCAATGCCCAATTTTTTGTTTTTTATGGTTCCTTTTTTATATGGTTCTTTTCTTTTTCATCCATCGATAAGAAGTTTGTTGTATTTTGTTTAGTAGTCCATAAGATAGATCTTAAGGGGAACTTACCTCCAGCCGACTTTCTATTGTGCATGCCCTTAACTTCTGTTTACCTTCCTCTTACTTTGAAGTAATAACATAGATTAACAGACGATTAAAGAGATGAGATACCTTGAATCAAAGTCGGAACACAGTTTTTAGATTGTGCCAATGGAAGGTTTGGGAGAGCGGGATGATGGAGCTCAACAAAGAAAGGAGCTTGCAAAACGTTGCCAGGAAGCAAAGGGTTGGGCCAGCAAGCTAGAATCCTACCAAGTCCTTCGTGCATTAGAGAGTTAAAGGTACCACCAGTGGAGGTTTTTGTGCAAAGGATAATGTACATACAAGCACATCTCTAACATCTAAATTTTGAATTTTCACATCTACTATTTCGATTAACACCCATTCATGTGATCTAATAAGTTTGAATATTAAATAAGGG

Coding sequence (CDS)

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCCCTATATATCCAGGACATGGTATTCAATTTGTTCGCAATGATGCGACGATTTTTAGATTTTGTCGATCAAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCTCGTAAAGTAAAATGGACTAAAGCTTATAGGAGGTTGCATGGAAAGGATATGACAAAGGACTCTACTTTTGAATTTGAGAGGTGGCGTCATAGGCCGCATAAATATGACAGGAATGTCACTGAAGATACATTGAAGGCTATTAAGAAGATTGATAAAATCAGAATGGATAGGGAATCGAGACATATTGCACGCAGACACCAAGGAAAGAAAGCAAAGGAGTTCAGAGAAGCAAAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAACTCAAAGTCAAAGTGTTACCATCACAATCAGAGCAAGATCGTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE
Homology
[Close]
BLAST of IVF0020443 vs. ExPASy Swiss-Prot
Match: O22165 (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.8e-54
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of IVF0020443 vs. ExPASy Swiss-Prot
Match: Q86B05 (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 77/142 (54.23%), Postives = 107/142 (75.35%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS P+YPGHG+ FVRND   FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K+MT D T EFE+ R+RP KYDR +  +T+ A+ ++ KI+  RE      R +G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 REAKKELDQSISLVKAPSVLKE 143
           ++  KE++Q++SL++ PS L +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]
BLAST of IVF0020443 vs. ExPASy Swiss-Prot
Match: Q9UHA3 (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-38
Identity = 75/139 (53.96%), Postives = 107/139 (76.98%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAP 138
           ++ +  KE+ Q+I L++AP
Sbjct: 121 QKVQDIKEVKQNIHLIRAP 137

[Close]
BLAST of IVF0020443 vs. ExPASy Swiss-Prot
Match: Q3SZ12 (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.4e-38
Identity = 72/137 (52.55%), Postives = 104/137 (75.91%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R +  K  + 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 REAKKELDQSISLVKAP 138
            +  KE+ Q+I L++AP
Sbjct: 121 VQDVKEVKQNIHLIRAP 137

[Close]
BLAST of IVF0020443 vs. ExPASy Swiss-Prot
Match: Q5RF04 (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.8e-38
Identity = 74/139 (53.24%), Postives = 107/139 (76.98%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS PIYPGHG+ FVRND  +FRFC+SKCHKNFK +RNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           K++T D++FEFE+ R+ P KY R +   T+ A+K++++I+  R+++ I  R   KK KE 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAK--KELDQSISLVKAP 138
           ++ +  KE+ Q+I L++AP
Sbjct: 121 QKVQDIKEVKQNIHLIRAP 137

[Close]
BLAST of IVF0020443 vs. ExPASy TrEMBL
Match: A0A5A7TFB9 (Putative ribosome biogenesis protein RLP24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00400 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.0e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]
BLAST of IVF0020443 vs. ExPASy TrEMBL
Match: A0A1S3CRL0 (probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC103503948 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.0e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]
BLAST of IVF0020443 vs. ExPASy TrEMBL
Match: A0A0A0LQI2 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 91  MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 150

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 151 KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 210

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 211 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 257

[Close]
BLAST of IVF0020443 vs. ExPASy TrEMBL
Match: A0A0A0LIW9 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

[Close]
BLAST of IVF0020443 vs. ExPASy TrEMBL
Match: A0A1S3C349 (probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC103496478 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 9.8e-89
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 168
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+P+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

[Close]
BLAST of IVF0020443 vs. NCBI nr
Match: XP_008466567.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo] >KAA0041608.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa] >TYK19649.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa])

HSP 1 Score: 338 bits (868), Expect = 2.62e-117
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167

[Close]
BLAST of IVF0020443 vs. NCBI nr
Match: XP_011649861.1 (probable ribosome biogenesis protein RLP24 [Cucumis sativus] >XP_011652414.1 probable ribosome biogenesis protein RLP24 [Cucumis sativus] >KAE8652222.1 hypothetical protein Csa_021953 [Cucumis sativus] >KGN59956.1 hypothetical protein Csa_001526 [Cucumis sativus])

HSP 1 Score: 337 bits (865), Expect = 7.51e-117
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+PSQSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPSQSEQDRMEE 167

[Close]
BLAST of IVF0020443 vs. NCBI nr
Match: XP_008456562.1 (PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo])

HSP 1 Score: 336 bits (862), Expect = 2.15e-116
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF
Sbjct: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQDRMEE 167
           REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+P+QSEQDRMEE
Sbjct: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSEQDRMEE 167

[Close]
BLAST of IVF0020443 vs. NCBI nr
Match: KAA0057127.1 (putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa] >TYJ97108.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa])

HSP 1 Score: 325 bits (832), Expect = 1.57e-111
Identity = 165/186 (88.71%), Postives = 167/186 (89.78%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDAT-------------------IFRFCRSKCHKNFK 60
           MRLEKCWFCSSPIYPGHGIQFVRNDAT                   IFRFCRSKCHKNFK
Sbjct: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATVRTQVANFHDLYALFCTLLIFRFCRSKCHKNFK 60

Query: 61  MKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRM 120
           MKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRM
Sbjct: 61  MKRNPRKVKWTKAYRRLHGKDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRM 120

Query: 121 DRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSE 167
           DRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKV+P+QSE
Sbjct: 121 DRESRHIARRHQGKKAKEFREAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVVPTQSE 180

[Close]
BLAST of IVF0020443 vs. NCBI nr
Match: XP_038903115.1 (probable ribosome biogenesis protein RLP24 [Benincasa hispida])

HSP 1 Score: 297 bits (760), Expect = 7.97e-101
Identity = 147/168 (87.50%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMT+DSTFEFER R+RP +YDRN+TE+TLKAI+KIDK+R DRESRHIARRHQGKKAKE 
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIRKIDKVRADRESRHIARRHQGKKAKEL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQ-DRMEE 167
            EA+KELDQSISLVKAPS LKEDPSLTLPK+K+KV+PSQ+EQ  RMEE
Sbjct: 121 SEAQKELDQSISLVKAPSALKEDPSLTLPKIKIKVVPSQAEQTQRMEE 168

[Close]
BLAST of IVF0020443 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 211.1 bits (536), Expect = 7.0e-55
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of IVF0020443 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 211.1 bits (536), Expect = 7.0e-55
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSS IYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAIKKIDKIRMDRESRHIARRHQGKKAKEF 120
           KDMTKD+TFEFE+ R+RP +YDRNVTE+TL AIKKI KIR  RE++HI  R +  K K+ 
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAKKELDQSISLVKAPSVLKEDPSLTLPKLKVKVLPSQSEQ-DRMEE 168
            +  KELDQ+I +V+AP            K+KV V   +S Q + MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]
BLAST of IVF0020443 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.8e-14
Identity = 43/127 (33.86%), Postives = 69/127 (54.33%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAI--KKIDKIRMDRESRHIARRHQGKKAK 120
           KD  +++     R   +P  Y R++   TL+ I  K+ +K  +   +R  A R   ++ K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 EFREAKK 126
           + ++ KK
Sbjct: 123 KTKDEKK 127

[Close]
BLAST of IVF0020443 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 43/127 (33.86%), Postives = 69/127 (54.33%), Query Frame = 0 

Query: 1   MRLEKCWFCSSPIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+ +F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 61  KDMTKDSTFEFERWRHRPHKYDRNVTEDTLKAI--KKIDKIRMDRESRHIARRHQGKKAK 120
           KD  +++     R   +P  Y R++   TL+ I  K+ +K  +   +R  A R   ++ K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 EFREAKK 126
           + ++ KK
Sbjct: 123 KTKDEKK 127

The following BLAST results are available for this feature:
BLAST of IVF0020443 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O221659.8e-5466.07Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q86B051.1e-4154.23Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ... [more]
Q9UHA32.6e-3853.96Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE... [more]
Q3SZ123.4e-3852.55Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2... [more]
Q5RF045.8e-3853.24Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE... [more]
BLAST of IVF0020443 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TFB92.0e-89100.00Putative ribosome biogenesis protein RLP24 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3CRL02.0e-89100.00probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC1035039... [more]
A0A0A0LQI24.4e-8999.40TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G385010 PE=3 ... [more]
A0A0A0LIW94.4e-8999.40TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G855990 PE=3 ... [more]
A0A1S3C3499.8e-8998.80probable ribosome biogenesis protein RLP24 OS=Cucumis melo OX=3656 GN=LOC1034964... [more]
BLAST of IVF0020443 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008466567.12.62e-117100.00PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo] >KAA0041608... [more]
XP_011649861.17.51e-11799.40probable ribosome biogenesis protein RLP24 [Cucumis sativus] >XP_011652414.1 pro... [more]
XP_008456562.12.15e-11698.80PREDICTED: probable ribosome biogenesis protein RLP24 [Cucumis melo][more]
KAA0057127.11.57e-11188.71putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa] >TYJ97108.... [more]
XP_038903115.17.97e-10187.50probable ribosome biogenesis protein RLP24 [Benincasa hispida][more]
BLAST of IVF0020443 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G44860.17.0e-5566.07Ribosomal protein L24e family protein [more]
AT2G44860.27.0e-5566.07Ribosomal protein L24e family protein [more]
AT3G53020.17.8e-1433.86Ribosomal protein L24e family protein [more]
AT2G36620.11.3e-1333.86ribosomal protein L24 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011017TRASH domainSMARTSM007464TRASHcoord: 6..44
e-value: 5.7E-12
score: 55.8
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 1..68
e-value: 1.6E-35
score: 122.9
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 1..65
e-value: 1.2E-34
score: 118.4
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 1..163
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 1..54
e-value: 1.77371E-30
score: 103.421
NoneNo IPR availablePANTHERPTHR10792:SF36BNAA04G10330D PROTEINcoord: 1..163
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 4..56
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 8..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020443.1IVF0020443.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042273 ribosomal large subunit biogenesis
cellular_component GO:0005730 nucleolus