IVF0020383 (gene) Melon (IVF77) v1

Overview


Name	IVF0020383
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 25424486 .. 25424822 (-)
RNA-Seq Expression	IVF0020383
Synteny	IVF0020383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGAGACACGTGTGAGGCTGAGGAAACTGTGTAAAGGGGAAGATGAAAGGAGGGCTGCTCCGGGCCCCACTTTTGGATACGGAGGATCTCCGTCGGGACACGAGCATGGGTCTTTATCCCGTGTGAACGCAACACACCGCATTCGATTTCGTTCTCCAATTACATTTCGATACGTTCCTCATTATTTGACCTCCCCATTTTCGTAATATCGTTAAGTAACAAGGGTCATAAAAGTCTTGTAATGTATTAGGTCCCCTATTCTACTGCCCTCCCTCAATCCACTTGGAAAATAGAAATTTGGTATATTTAACACAAACAGAATCTAAGCCTTAG

mRNA sequence

ATGAGGGAGACACGTGTGAGGCTGAGGAAACTGTGTAAAGGGGAAGATGAAAGGAGGGCTGCTCCGGGCCCCACTTTTGGATACGGAGGATCTCCGTCGGGACACGAGCATGGAAATTTGGTATATTTAACACAAACAGAATCTAAGCCTTAG

Coding sequence (CDS)

ATGAGGGAGACACGTGTGAGGCTGAGGAAACTGTGTAAAGGGGAAGATGAAAGGAGGGCTGCTCCGGGCCCCACTTTTGGATACGGAGGATCTCCGTCGGGACACGAGCATGGAAATTTGGTATATTTAACACAAACAGAATCTAAGCCTTAG

Protein sequence

MRETRVRLRKLCKGEDERRAAPGPTFGYGGSPSGHEHGNLVYLTQTESKP

Homology

[Close]

BLAST of IVF0020383 vs. ExPASy TrEMBL
Match: A0A0A0LLI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G362460 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MRETRVRLRKLCKGEDERRAAPGPTFGYGGSPSGHEHGNLVYL-TQTESKP 51
          MRETRVRLRKLCK EDERRAAPGPTFGYGGSP GHEHG+L YL   TES P
Sbjct: 1  MRETRVRLRKLCKEEDERRAAPGPTFGYGGSPLGHEHGSLFYLDANTESNP 51

[Close]

BLAST of IVF0020383 vs. NCBI nr
Match: KGN62633.1 (hypothetical protein Csa_022204 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 2.30e-21
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MRETRVRLRKLCKGEDERRAAPGPTFGYGGSPSGHEHGNLVYL-TQTESKP 50
          MRETRVRLRKLCK EDERRAAPGPTFGYGGSP GHEHG+L YL   TES P
Sbjct: 1  MRETRVRLRKLCKEEDERRAAPGPTFGYGGSPLGHEHGSLFYLDANTESNP 51

The following BLAST results are available for this feature:

BLAST of IVF0020383 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLI7	1.1e-14	84.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G362460 PE=4 SV=1	[more]

BLAST of IVF0020383 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62633.1	2.30e-21	84.31	hypothetical protein Csa_022204 [Cucumis sativus]	[more]

BLAST of IVF0020383 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020383.1	IVF0020383.1	mRNA