IVF0020361 (gene) Melon (IVF77) v1

Overview


Name	IVF0020361
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr04: 24875221 .. 24876949 (-)
RNA-Seq Expression	IVF0020361
Synteny	IVF0020361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACCATACCAGTACTGGCTTTACCCGATTGGTCTCTACCCTTTATGATAGAAACTGATGCCTCAGGTAGTGGATTGGGAGCAGTACTATCCCAGAACAGCCATCCCATAGCATTCTTCAGTCAGAAATTGTCTACAAGGGCTCAAGCCAAGTCCATATACGAGAGAGAATTGATGGCTGTAGTATTATCCGTGCAAAAGTGGCGGCATTATCTTTTAGGAAGGAGATTCACCATTATGTCAGACCAAAAAGCTCTAAAGTTTTTATTGGAGCAGAGAGAGGTACAACCACAATTCCAAAAGTGGTTAACCAAGTTATTGGGATATGACTTTGAAATTTTGTACCAACCGGGACTTCAAAATAAGGCAGCAGATGCACTTTCAAGGATGGATCATTCAATAGAATTGAAGGCGTTGTCAACAACAGGGATTGTAGACATGGAAGTAGTTACAAAGGAAGTCGAGAAAGATGAAGAACTTCAACTCCTAATCCAACAGTTGCAGAATAACCCAGCATTGGAGGGCAAATACTCTTTAACAAATGGCACGCTAATGTATAAAGGAAGGGTGGTGCTGTCCAAATCATCGTCAATTATACCCAGCCTTTTACACACCTTCCATGATTCGATTTTGGGGGGCCATTCAGGATTTTTGAGGACTTACAAGCGAATGAGTGGTGAGCTGTTTTGGAAAGGTATGAAAGAAGACATCAAGAAGTATGTGGAACAGTGTGAAATCTGCCAAAGAAATAAGAGTGAAGCAACCAAACCGGCAGGGGTTCTACAACCATTACCCATACCCGACCGCATATTGGAAGATTGGACTATGGACTTCATCGAAGGATTGCCTAAAGCAGGAGGTATGAACGTGATTATGGTGGTTGTAGACCGGCTGAGTAAATATGCTTACTTTGTCACCATGAAGCATCCGTTTTCAGCAAAGCAAGTTGCCATGGAATTCATTGATAAGATGGTTCGAAGACACGGCATCCCTAAGTCAATTATATCAGATAGGGACAAAATATTTGTAAGCAACTTTTGGAAAGAACTATTTTATGCCATGAATACCATCCTTAAACGAAGCACTGCCTTTCATCCTCAAACGGATGGCCAAACAGAACGAGTCAATCAGTGTTTAGAAACCTACTTACGGTGCTTTTGTAATGAGCAACCAAACAAATGGCATCAGTTCATTCCATGGGCAGAGTTATGGTACAACACCACATTCCATTCGTCAACACGCACAACTCCTTTTCAGACTGTGTATGGTAGACCCCCACCACCCTTGATATCCTATGGAGATAAGAAGACACCTAATGATGAAGTTGAAGCATTGCTGAAGGAAAGAGATTTGGCTATTAGTGCGCTCAAGGAGAACCTCACGATCGCTCAAAACAGAATGAAGAAGTTTGCGGACTCAAAGAGGAGAGAACTTAAGTTTAAAGTAGGAGATGAAGTCTATCTAAAGTTAAGACCCTACCGGCAGCGCTCCTTAGCAAGAAAAAGGGCAGAAAAGCTAGCTCCTAAATATTATGGCCCATATCGCATCACTGAAACCATAGGAGAAGTGGCATACCGACTTGATTTACCACCCGAAGCATCAATTCATAATGTTTTCCACATATCACAGCTCAAACTGAAACTAGGCAACCAACACAACGTCCAAATCCAACAACCACAGCTCACAGCAGAGTTCGAATTACAACTTTGGCCGGAGACAGTCTTAG

mRNA sequence

ATGTCTACCATACCAGTACTGGCTTTACCCGATTGGTCTCTACCCTTTATGATAGAAACTGATGCCTCAGGTAGTGGATTGGGAGCAGTACTATCCCAGAACAGCCATCCCATAGCATTCTTCAGTCAGAAATTGTCTACAAGGGCTCAAGCCAAGTCCATATACGAGAGAGAATTGATGGCTGTAGTATTATCCGTGCAAAAGTGGCGGCATTATCTTTTAGGAAGGAGATTCACCATTATGTCAGACCAAAAAGCTCTAAAGTTTTTATTGGAGCAGAGAGAGGTACAACCACAATTCCAAAAGTGGTTAACCAAGTTATTGGGATATGACTTTGAAATTTTGTACCAACCGGGACTTCAAAATAAGGCAGCAGATGCACTTTCAAGGATGGATCATTCAATAGAATTGAAGGCGTTGTCAACAACAGGGATTGTAGACATGGAAGTAGTTACAAAGGAAGTCGAGAAAGATGAAGAACTTCAACTCCTAATCCAACAGTTGCAGAATAACCCAGCAACCAACACAACGTCCAAATCCAACAACCACAGCTCACAGCAGAGTTCGAATTACAACTTTGGCCGGAGACAGTCTTAG

Coding sequence (CDS)

ATGTCTACCATACCAGTACTGGCTTTACCCGATTGGTCTCTACCCTTTATGATAGAAACTGATGCCTCAGGTAGTGGATTGGGAGCAGTACTATCCCAGAACAGCCATCCCATAGCATTCTTCAGTCAGAAATTGTCTACAAGGGCTCAAGCCAAGTCCATATACGAGAGAGAATTGATGGCTGTAGTATTATCCGTGCAAAAGTGGCGGCATTATCTTTTAGGAAGGAGATTCACCATTATGTCAGACCAAAAAGCTCTAAAGTTTTTATTGGAGCAGAGAGAGGTACAACCACAATTCCAAAAGTGGTTAACCAAGTTATTGGGATATGACTTTGAAATTTTGTACCAACCGGGACTTCAAAATAAGGCAGCAGATGCACTTTCAAGGATGGATCATTCAATAGAATTGAAGGCGTTGTCAACAACAGGGATTGTAGACATGGAAGTAGTTACAAAGGAAGTCGAGAAAGATGAAGAACTTCAACTCCTAATCCAACAGTTGCAGAATAACCCAGCAACCAACACAACGTCCAAATCCAACAACCACAGCTCACAGCAGAGTTCGAATTACAACTTTGGCCGGAGACAGTCTTAG

Protein sequence

MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPATNTTSKSNNHSSQQSSNYNFGRRQS

Homology

[Close]

BLAST of IVF0020361 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-24
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 5   PVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVL 64
           P+L LPD+   F++ TDAS   LGAVLSQN HPI+F S+ L+      S  E+EL+A+V 
Sbjct: 497 PILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVW 556

Query: 65  SVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA 124
           + + +RHYLLGR+F I SD + L++L   +E   + ++W  +L  Y F+I Y  G +N  
Sbjct: 557 ATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSV 616

Query: 125 ADALSRM 132
           ADALSR+
Sbjct: 617 ADALSRI 623

[Close]

BLAST of IVF0020361 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 55/131 (41.98%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 1   MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
           +S  P+L +PD++  F + TDAS   LGAVLSQ+ HP+++ S+ L+      S  E+EL+
Sbjct: 494 ISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELL 553

Query: 61  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
           A+V + + +RHYLLGR F I SD + L +L   ++   +  +W  KL  +DF+I Y  G 
Sbjct: 554 AIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGK 613

Query: 121 QNKAADALSRM 132
           +N  ADALSR+
Sbjct: 614 ENCVADALSRI 624

[Close]

BLAST of IVF0020361 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 6   VLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLS 65
           +L  PD+  PF + TDAS SG+GAVLSQ   PI   S+ L    Q  +  EREL+A+V +
Sbjct: 485 ILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWA 544

Query: 66  VQKWRHYLLG-RRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKA 125
           + K +++L G R   I +D + L F +  R    + ++W + +  ++ ++ Y+PG +N  
Sbjct: 545 LGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFV 604

Query: 126 ADALSRMD 133
           ADALSR +
Sbjct: 605 ADALSRQN 612

[Close]

BLAST of IVF0020361 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.6e-16
Identity = 50/142 (35.21%), Postives = 81/142 (57.04%), Query Frame = 0


Query: 6   VLALPDWSLPFMIETDASGSGLGAVLSQN----SHPIAFFSQKLSTRAQAKSIYERELMA 65
           +LA P ++ PF + TDAS   +GAVLSQ+      PIA+ S+ L+   +  +  E+E++A
Sbjct: 425 ILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLA 484

Query: 66  VVLSVQKWRHYLLGR-RFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 125
           ++ S+   R YL G     + +D + L F L  R    + ++W  ++  Y+ E++Y+PG 
Sbjct: 485 IIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGK 544

Query: 126 QNKAADALSRMDHSIELKALST 143
            N  ADALSR+    +L  LST
Sbjct: 545 SNVVADALSRIPP--QLNQLST 564

[Close]

BLAST of IVF0020361 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 60/182 (32.97%), Postives = 94/182 (51.65%), Query Frame = 0


Query: 5   PVLALPDWSLPFMIETDASGSGLGAVLSQNS-----HPIAFFSQKLSTRAQAKSIYEREL 64
           PVL   D+S   ++ETDAS   +GAVLSQ       +P+ ++S K+S      S+ ++E+
Sbjct: 697 PVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEM 756

Query: 65  MAVVLSVQKWRHYLLG--RRFTIMSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEIL 124
           +A++ S++ WRHYL      F I++D + L  +   E      +  +W   L  ++FEI 
Sbjct: 757 LAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEIN 816

Query: 125 YQPGLQNKAADALSRM------------DHSIE-LKALSTTGIVDMEVVTKEVEKDEELQ 165
           Y+PG  N  ADALSR+            D+SI  +  +S T     +VVT+     + L 
Sbjct: 817 YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

[Close]

BLAST of IVF0020361 vs. ExPASy TrEMBL
Match: A0A5D3E325 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00690 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1    MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
            MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 61   AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
            AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

Query: 121  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 174
            QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA
Sbjct: 995  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 1047

[Close]

BLAST of IVF0020361 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1    MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
            MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 61   AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
            AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

Query: 121  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 174
            QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA
Sbjct: 995  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 1047

[Close]

BLAST of IVF0020361 vs. ExPASy TrEMBL
Match: A0A5D3DZK6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00310 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1    MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
            MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 61   AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
            AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

Query: 121  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 174
            QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA
Sbjct: 995  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 1047

[Close]

BLAST of IVF0020361 vs. ExPASy TrEMBL
Match: A0A5D3DWA9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001670 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1    MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
            MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 61   AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
            AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

Query: 121  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 174
            QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA
Sbjct: 995  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 1047

[Close]

BLAST of IVF0020361 vs. ExPASy TrEMBL
Match: A0A5D3DU86 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00470 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1    MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
            MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 61   AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
            AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

Query: 121  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 174
            QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA
Sbjct: 995  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 1047

[Close]

BLAST of IVF0020361 vs. NCBI nr
Match: KAA0061435.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 324 bits (831), Expect = 1.18e-106
Identity = 163/173 (94.22%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
           MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQN HPIAFFSQKLSTRAQ+KSIYERELM
Sbjct: 182 MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSTRAQSKSIYERELM 241

Query: 61  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
           AVVLSVQKWRHYLLGRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 242 AVVLSVQKWRHYLLGRRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 301

Query: 121 QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 173
           QNKAADALSRMDHS+ELKA+ST GI+DMEVVTKEVEKDEELQL+ QQLQ NPA
Sbjct: 302 QNKAADALSRMDHSLELKAISTAGIIDMEVVTKEVEKDEELQLITQQLQTNPA 354

[Close]

BLAST of IVF0020361 vs. NCBI nr
Match: TYK21513.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 324 bits (831), Expect = 1.18e-106
Identity = 163/173 (94.22%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
           MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQN HPIAFFSQKLSTRAQ+KSIYERELM
Sbjct: 182 MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSTRAQSKSIYERELM 241

Query: 61  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
           AVVLSVQKWRHYLLGRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 242 AVVLSVQKWRHYLLGRRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 301

Query: 121 QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 173
           QNKAADALSRMDHS+ELKA+ST GI+DMEVVTKEVEKDEELQL+ QQLQ NPA
Sbjct: 302 QNKAADALSRMDHSLELKAISTAGIIDMEVVTKEVEKDEELQLITQQLQTNPA 354

[Close]

BLAST of IVF0020361 vs. NCBI nr
Match: TYJ96663.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 337 bits (865), Expect = 9.98e-104
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1    MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
            MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 61   AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
            AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

Query: 121  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 173
            QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA
Sbjct: 995  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 1047

[Close]

BLAST of IVF0020361 vs. NCBI nr
Match: TYK21035.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 337 bits (865), Expect = 9.98e-104
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1    MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
            MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 61   AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
            AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

Query: 121  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 173
            QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA
Sbjct: 995  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 1047

[Close]

BLAST of IVF0020361 vs. NCBI nr
Match: TYK27058.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 337 bits (865), Expect = 9.98e-104
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1    MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 60
            MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM
Sbjct: 875  MSTIPVLALPDWSLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELM 934

Query: 61   AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 120
            AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL
Sbjct: 935  AVVLSVQKWRHYLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGL 994

Query: 121  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 173
            QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA
Sbjct: 995  QNKAADALSRMDHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPA 1047

The following BLAST results are available for this feature:

BLAST of IVF0020361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.5e-24	45.67	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.1e-22	41.98	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10401	1.8e-17	37.50	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	9.6e-16	35.21	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q9UR07	1.8e-14	32.97	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of IVF0020361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E325	4.4e-88	100.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BBH7	4.4e-88	100.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DZK6	4.4e-88	100.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DWA9	4.4e-88	100.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DU86	4.4e-88	100.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of IVF0020361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061435.1	1.18e-106	94.22	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK21513.1	1.18e-106	94.22	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ96663.1	9.98e-104	100.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK21035.1	9.98e-104	100.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gyp...	[more]
TYK27058.1	9.98e-104	100.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020361 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.370		coord: 11..81 e-value: 2.9E-10 score: 42.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..198
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..132
None	No IPR available	PANTHER	PTHR24559:SF384	SUBFAMILY NOT NAMED	coord: 3..132
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 18..131 e-value: 3.92723E-54 score: 166.514
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 11..110 e-value: 7.5E-30 score: 103.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020361.1	IVF0020361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding