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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCACATAAAATAAAAAGAGAAAAGAAGAAAGACGAAATCACAGGGAAAAACAGGGAAGACGAAATAACAGGAGGAAAACGAATCGCGAGGAAGAATAGAAAGATGGAAGGGCAAATCTGA mRNA sequence ATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCACATAAAATAAAAAGAGAAAAGAAGAAAGACGAAATCACAGGGAAAAACAGGGAAGACGAAATAACAGGAGGAAAACGAATCGCGAGGAAGAATAGAAAGATGGAAGGGCAAATCTGA Coding sequence (CDS) ATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCACATAAAATAAAAAGAGAAAAGAAGAAAGACGAAATCACAGGGAAAAACAGGGAAGACGAAATAACAGGAGGAAAACGAATCGCGAGGAAGAATAGAAAGATGGAAGGGCAAATCTGA Protein sequence MERLNDINKELKNKKDDGKKSHKIKREKKKDEITGKNREDEITGGKRIARKNRKMEGQI
Homology
BLAST of IVF0020343 vs. NCBI nr
Match: KAA0057036.1 (hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa]) HSP 1 Score: 48.1 bits (113), Expect = 6.24e-05 Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0 Query: 1 MERLNDINKELKNKKDDGKKSHKIKREKKKDEITGKNREDEITGGKR 47 MERLNDINKELKNKKD + K K++KKK+EITG EDEI GG++ Sbjct: 1 MERLNDINKELKNKKDMERNRRKEKQKKKKEEITG---EDEIRGGRK 44
BLAST of IVF0020343 vs. NCBI nr
Match: KAA0033511.1 (hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa]) HSP 1 Score: 48.9 bits (115), Expect = 1.04e-04 Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0 Query: 21 SHKIKREKKKDEITGKNREDEITGGKRIARKNRKMEGQ 58 + K ++E KKDEI G++ +DEITGG+RIARKNRKMEGQ Sbjct: 5 NRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQ 42
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAA0057036.1 | 6.24e-05 | 65.96 | hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa] | [more] |
KAA0033511.1 | 1.04e-04 | 68.42 | hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 1..21 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..59 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 27..59 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..17 |
Relationships
The following mRNA feature(s) are a part of this gene:
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