IVF0020291 (gene) Melon (IVF77) v1

Overview


Name	IVF0020291
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
Location	chr04: 28641840 .. 28642981 (+)
RNA-Seq Expression	IVF0020291
Synteny	IVF0020291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTAAAGGTCCCAGGTCTAAACTTGATCACGAGTCGAGAGCTAAGCGCCAAAAGGTATTATACCTCTCTGGGGAACAGAGAATTTGAGATTACTTATGGAAGCTGCTTGGTTTGCATGTTTTTCGTTCAATCCATCCATCGATCTATCTAACTACCTTTTTCACATGCTAACATGGATATTCATGCTTACACACATTGGGAGTTCTCCAAGAATCTTAAACAATTCTTGCGATTTTTTTGTCTACTCATGATGTCATGATGGTTATTTGGTATTTCAGGCACTTGAAGCTTCAAGAGAACCCAATCGACCTAAAACACATTGGGATCATGTTTTAGAAGAAATGGTTTGGCTATCAAAGGTGAATGACTAAGCCGACAATTTAAAATTGAGCTCCTTTTTGGTTTGAATGATTTAAATTACATGCATTTCACTCCATCACTTTCGAATTTTCTATATAAGGATGTCTGGTGATTCAAAGTTGGATCTTTTGGATTTCATTCATACAAGTAAATTGATTATTTGCAGGACTTTGAGTCTGAGCGGAAATGGAAATTAGCTCAGGCAAAAAGGGTTGCTCTAAGAGCTAGCAAAGGCATGGTAGATCAAGCAACAAGGGAAGAAAGGAAGTTGAAGGTTCAAAATAACCTCTAATTAGAAATATTCTTGTTGGTTTTCAAACAAAACAACAATGGCCTTGGGAATGAACCAAAAAATCTAGAAGTTGCTTGGATGTATCTCTTAATTTTATTTTTTAAAAGCCGTTTTCCAATATTTTGAAAACATTTTGTATTACTTTTGAAATTGGATAATTGTTTAAAATTATTTGTTATTTTTGTCCATTGTGACCGCCGACCAATATCCAGACAAGTTTTCTTTATTAAGAATTATCTGCTTTTTATTTCTAAACACAGAAAATTATGTTTGATCACTACTTTTAAACAGTCCCTGGTGTTAATGTTATTCATAGGATCATAATTATGAATGTACTGTTTTCCATTTTGCACAGGAGGAGGAGCAACGATTGAGAAAACTTGCTCTCAATATTTCAAAGGATGTAAAGAAGTTCTGGATGAAAATAGAAAAGCTGGCAAGTTCATTGACACAATACTATTTTGGTTTCTTTTGGATGAGATGA

mRNA sequence

ATGACATCTAAAGGTCCCAGGTCTAAACTTGATCACGAGTCGAGAGCTAAGCGCCAAAAGGCACTTGAAGCTTCAAGAGAACCCAATCGACCTAAAACACATTGGGATCATGTTTTAGAAGAAATGGTTTGGCTATCAAAGGACTTTGAGTCTGAGCGGAAATGGAAATTAGCTCAGGCAAAAAGGGTTGCTCTAAGAGCTAGCAAAGGCATGGTAGATCAAGCAACAAGGGAAGAAAGGAAGTTGAAGGAGGAGGAGCAACGATTGAGAAAACTTGCTCTCAATATTTCAAAGGATGTAAAGAAGTTCTGGATGAAAATAGAAAAGCTGGCAAGTTCATTGACACAATACTATTTTGGTTTCTTTTGGATGAGATGA

Coding sequence (CDS)

ATGACATCTAAAGGTCCCAGGTCTAAACTTGATCACGAGTCGAGAGCTAAGCGCCAAAAGGCACTTGAAGCTTCAAGAGAACCCAATCGACCTAAAACACATTGGGATCATGTTTTAGAAGAAATGGTTTGGCTATCAAAGGACTTTGAGTCTGAGCGGAAATGGAAATTAGCTCAGGCAAAAAGGGTTGCTCTAAGAGCTAGCAAAGGCATGGTAGATCAAGCAACAAGGGAAGAAAGGAAGTTGAAGGAGGAGGAGCAACGATTGAGAAAACTTGCTCTCAATATTTCAAAGGATGTAAAGAAGTTCTGGATGAAAATAGAAAAGCTGGCAAGTTCATTGACACAATACTATTTTGGTTTCTTTTGGATGAGATGA

Protein sequence

MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLASSLTQYYFGFFWMR

Homology

[Close]

BLAST of IVF0020291 vs. ExPASy Swiss-Prot
Match: Q7X9V2 (Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana OX=3702 GN=PIE1 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.8e-45
Identity = 93/110 (84.55%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SK  +SK D+ESRAKRQK LEA +EP RPKTHWDHVLEEM WLSKDFESERKWKLAQA
Sbjct: 14  MASKSGKSKPDNESRAKRQKTLEAPKEPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQA 73

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           K+VALRASKGM+DQA+REERKLKEEEQRLRK+ALNISKD+KKFWMK+EKL
Sbjct: 74  KKVALRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVEKL 123

[Close]

BLAST of IVF0020291 vs. ExPASy Swiss-Prot
Match: Q9NDJ2 (Helicase domino OS=Drosophila melanogaster OX=7227 GN=dom PE=1 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-16
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 19  QKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATRE 78
           ++ L   +EP+RPK HWD++LEEMVWL+ DF  ERKWK   AK+ A    K   D+AT  
Sbjct: 504 ERRLPKLQEPSRPKAHWDYLLEEMVWLAADFAQERKWKKNAAKKCAKMVQKYFQDKATAA 563

Query: 79  ERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           +R  K +E +L+++A  I+++VK FW  +EKL
Sbjct: 564 QRAEKAQELQLKRVASFIAREVKSFWSNVEKL 595

[Close]

BLAST of IVF0020291 vs. ExPASy Swiss-Prot
Match: Q6ZRS2 (Helicase SRCAP OS=Homo sapiens OX=9606 GN=SRCAP PE=1 SV=3)

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-15
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 20  KALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATREE 79
           K L    EP RPK HWD++ EEM WLS DF  ER+WK   A++V     +   +Q  +EE
Sbjct: 122 KRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEE 181

Query: 80  RKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           R  +EE+ +LR++A  ++KDV++FW  +EK+
Sbjct: 182 RARREEQAKLRRIASTMAKDVRQFWSNVEKV 212

[Close]

BLAST of IVF0020291 vs. ExPASy Swiss-Prot
Match: Q8CHI8 (E1A-binding protein p400 OS=Mus musculus OX=10090 GN=Ep400 PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-15
Identity = 38/91 (41.76%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 20  KALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATREE 79
           + L   +E  RPK+HWD++LEEM W++ DF  ER+WKLA AK++    ++   ++  REE
Sbjct: 796 RRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKLAAAKKLVRTVARHHEEKKLREE 855

Query: 80  RKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           R  KEE+ RLR++A   +++++ FW  IE++
Sbjct: 856 RGKKEEQSRLRRIAATTAREIEYFWSNIEQV 886

[Close]

BLAST of IVF0020291 vs. ExPASy Swiss-Prot
Match: Q96L91 (E1A-binding protein p400 OS=Homo sapiens OX=9606 GN=EP400 PE=1 SV=4)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14
Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 19  QKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATRE 78
           Q+ L   +E  RPK+HWD++LEEM W++ DF  ER+WK+A AK++     +   ++  RE
Sbjct: 796 QRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVVRHHEEKQLRE 855

Query: 79  ERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           ER  KEE+ RLR++A + +++++ FW  IE++
Sbjct: 856 ERGKKEEQSRLRRIAASTAREIECFWSNIEQV 887

[Close]

BLAST of IVF0020291 vs. ExPASy TrEMBL
Match: A0A5A7TNS3 (Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005490 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL
Sbjct: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 110

[Close]

BLAST of IVF0020291 vs. ExPASy TrEMBL
Match: A0A1S4DUM1 (LOW QUALITY PROTEIN: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Cucumis melo OX=3656 GN=LOC103486773 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL
Sbjct: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 110

[Close]

BLAST of IVF0020291 vs. ExPASy TrEMBL
Match: A0A0A0LBB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808390 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.5e-51
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEAS+EPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 107 MTSKGPRSKLDHESRAKRQKALEASKEPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 166

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL
Sbjct: 167 KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 216

[Close]

BLAST of IVF0020291 vs. ExPASy TrEMBL
Match: A0A7J6FJ28 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_025090 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.3e-48
Identity = 102/113 (90.27%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SKGPRSKLDHESRAKRQKALEA REP RPKTHWDHVLEEMVWLSKDFESERKWKL+QA
Sbjct: 1   MASKGPRSKLDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLSQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLASS 114
           K+VALRASKGM+DQATR E+KLKEEEQRL+K+ALNISKDVKKFW+KIEKLASS
Sbjct: 61  KKVALRASKGMLDQATRGEKKLKEEEQRLKKVALNISKDVKKFWLKIEKLASS 113

[Close]

BLAST of IVF0020291 vs. ExPASy TrEMBL
Match: A0A7J6FV72 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_016073 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.3e-48
Identity = 102/113 (90.27%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SKGPRSKLDHESRAKRQKALEA REP RPKTHWDHVLEEMVWLSKDFESERKWKL+QA
Sbjct: 36  MASKGPRSKLDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLSQA 95

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLASS 114
           K+VALRASKGM+DQATR E+KLKEEEQRL+K+ALNISKDVKKFW+KIEKLASS
Sbjct: 96  KKVALRASKGMLDQATRGEKKLKEEEQRLKKVALNISKDVKKFWLKIEKLASS 148

[Close]

BLAST of IVF0020291 vs. NCBI nr
Match: EXB93633.1 (hypothetical protein L484_018018 [Morus notabilis])

HSP 1 Score: 196 bits (498), Expect = 7.86e-61
Identity = 102/113 (90.27%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SKGPRSKLDHESRAKRQKALEA REP RPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MASKGPRSKLDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLASS 113
           K+VAL+ASKGM+DQATR E+KLKEEEQRL+K+ALNISKDVKKFW+KIEKLASS
Sbjct: 61  KKVALKASKGMLDQATRGEKKLKEEEQRLKKVALNISKDVKKFWLKIEKLASS 113

[Close]

BLAST of IVF0020291 vs. NCBI nr
Match: KAA0043726.1 (protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Cucumis melo var. makuwa] >TYK25407.1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (530), Expect = 1.63e-59
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLA 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 
Sbjct: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLV 111

[Close]

BLAST of IVF0020291 vs. NCBI nr
Match: XP_016899687.1 (PREDICTED: LOW QUALITY PROTEIN: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Cucumis melo])

HSP 1 Score: 208 bits (530), Expect = 1.63e-59
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLA 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 
Sbjct: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLV 111

[Close]

BLAST of IVF0020291 vs. NCBI nr
Match: XP_031739104.1 (protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 207 bits (527), Expect = 4.12e-59
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEAS+EPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MTSKGPRSKLDHESRAKRQKALEASKEPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLA 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 
Sbjct: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLV 111

[Close]

BLAST of IVF0020291 vs. NCBI nr
Match: XP_011652096.2 (protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Cucumis sativus] >XP_011652097.2 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Cucumis sativus] >XP_031739102.1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Cucumis sativus] >XP_031739103.1 protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Cucumis sativus] >KAE8651137.1 hypothetical protein Csa_001909 [Cucumis sativus])

HSP 1 Score: 207 bits (527), Expect = 4.12e-59
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEAS+EPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MTSKGPRSKLDHESRAKRQKALEASKEPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLA 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 
Sbjct: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLV 111

[Close]

BLAST of IVF0020291 vs. TAIR 10
Match: AT3G12810.1 (SNF2 domain-containing protein / helicase domain-containing protein )

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-46
Identity = 93/110 (84.55%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SK  +SK D+ESRAKRQK LEA +EP RPKTHWDHVLEEM WLSKDFESERKWKLAQA
Sbjct: 14  MASKSGKSKPDNESRAKRQKTLEAPKEPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQA 73

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           K+VALRASKGM+DQA+REERKLKEEEQRLRK+ALNISKD+KKFWMK+EKL
Sbjct: 74  KKVALRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVEKL 123

[Close]

BLAST of IVF0020291 vs. TAIR 10
Match: AT3G24880.1 (Helicase/SANT-associated, DNA binding protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 13  ESRAKRQKALEASREP--NRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKG 72
           +++ KR   L     P   R K+ WD VLEEM WL+ DF  ER WK+  A ++  R +  
Sbjct: 552 QAKKKRIAELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAAAQICHRVA-- 611

Query: 73  MVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIE 109
           +  Q   EER    + ++L+K+A  +S  + +FW  +E
Sbjct: 612 LTCQLRFEER---NQHRKLKKIASVLSNAILQFWSSVE 644

[Close]

BLAST of IVF0020291 vs. TAIR 10
Match: AT3G24870.1 (Helicase/SANT-associated, DNA binding protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-07
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 13  ESRAKRQKALEASREP--NRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKG 72
           +++ KR   L     P   R K+ WD VLEEM WL+ DF  ER WK+  A ++  R +  
Sbjct: 552 QAKKKRIAELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVA-- 611

Query: 73  MVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIE 109
           +  Q   EER    + ++L+K+A  +S  + +FW  +E
Sbjct: 612 LTCQLRFEER---NQHRKLKKIASVLSYAILQFWSSVE 644

[Close]

BLAST of IVF0020291 vs. TAIR 10
Match: AT3G24870.2 (Helicase/SANT-associated, DNA binding protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-07
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 13  ESRAKRQKALEASREP--NRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKG 72
           +++ KR   L     P   R K+ WD VLEEM WL+ DF  ER WK+  A ++  R +  
Sbjct: 547 QAKKKRIAELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVA-- 606

Query: 73  MVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIE 109
           +  Q   EER    + ++L+K+A  +S  + +FW  +E
Sbjct: 607 LTCQLRFEER---NQHRKLKKIASVLSYAILQFWSSVE 639

The following BLAST results are available for this feature:

BLAST of IVF0020291 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X9V2	2.8e-45	84.55	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana OX=370...	[more]
Q9NDJ2	2.1e-16	46.74	Helicase domino OS=Drosophila melanogaster OX=7227 GN=dom PE=1 SV=2	[more]
Q6ZRS2	3.9e-15	43.96	Helicase SRCAP OS=Homo sapiens OX=9606 GN=SRCAP PE=1 SV=3	[more]
Q8CHI8	6.7e-15	41.76	E1A-binding protein p400 OS=Mus musculus OX=10090 GN=Ep400 PE=1 SV=3	[more]
Q96L91	1.1e-14	41.30	E1A-binding protein p400 OS=Homo sapiens OX=9606 GN=EP400 PE=1 SV=4	[more]

BLAST of IVF0020291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNS3	1.6e-51	100.00	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S4DUM1	1.6e-51	100.00	LOW QUALITY PROTEIN: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Cucumi...	[more]
A0A0A0LBB6	3.5e-51	99.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808390 PE=4 SV=1	[more]
A0A7J6FJ28	6.3e-48	90.27	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_025090 PE=4 SV=1	[more]
A0A7J6FV72	6.3e-48	90.27	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_016073 PE=4 SV=1	[more]

BLAST of IVF0020291 vs. NCBI nr


Match Name	E-value	Identity	Description
EXB93633.1	7.86e-61	90.27	hypothetical protein L484_018018 [Morus notabilis]	[more]
KAA0043726.1	1.63e-59	99.10	protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Cucumis melo var. makuwa] >TY...	[more]
XP_016899687.1	1.63e-59	99.10	PREDICTED: LOW QUALITY PROTEIN: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING ...	[more]
XP_031739104.1	4.12e-59	98.20	protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X2 [Cucumis sativus]	[more]
XP_011652096.2	4.12e-59	98.20	protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Cucumis sativus] >...	[more]

BLAST of IVF0020291 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12810.1	2.0e-46	84.55	SNF2 domain-containing protein / helicase domain-containing protein	[more]
AT3G24880.1	1.8e-07	34.69	Helicase/SANT-associated, DNA binding protein	[more]
AT3G24870.1	3.1e-07	34.69	Helicase/SANT-associated, DNA binding protein	[more]
AT3G24870.2	3.1e-07	34.69	Helicase/SANT-associated, DNA binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 65..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR45685:SF1	HELICASE SRCAP	coord: 3..113
None	No IPR available	PANTHER	PTHR45685	HELICASE SRCAP-RELATED	coord: 3..113
IPR014012	Helicase/SANT-associated domain	SMART	SM00573	bromneu2	coord: 23..94 e-value: 7.7E-29 score: 111.8
IPR014012	Helicase/SANT-associated domain	PFAM	PF07529	HSA	coord: 27..93 e-value: 2.9E-18 score: 65.9
IPR014012	Helicase/SANT-associated domain	PROSITE	PS51204	HSA	coord: 22..94 score: 20.612341

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020291.1	IVF0020291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding