IVF0020221 (gene) Melon (IVF77) v1

Overview


Name	IVF0020221
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CACTA en-spm transposon protein
Location	chr10: 25876533 .. 25876781 (+)
RNA-Seq Expression	IVF0020221
Synteny	IVF0020221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTCCCGATGCCAAAAAAGACGTCGACACAAAGAACGTCGGGAATAAGGGTATTCTCGACACCATGCACACTGCGTCGGAAAAGGCATCGGGAAAAAGGGTATTCTCGACGCCCCAAGCACGCGTCATCCAACCGGCATTGGGAATAGGCCAAATTAAATTAAAAATACACCTTATTCCCGATGCCATGCAGAGTGCGTTGGGAACGACGTCGGGCATAAGGGGTTTTCCCGACGCACCGTAG

mRNA sequence

ATGGAGTTTCCCGATGCCAAAAAAGACGTCGACACAAAGAACGTCGGGAATAAGGGTATTCTCGACACCATGCACACTGCGTCGGAAAAGGCATCGGGAAAAAGGGTATTCTCGACGCCCCAAGCACGCGTCATCCAACCGGCATTGGGAATAGGCCAAATTAAATTAAAAATACACCTTATTCCCGATGCCATGCAGAGTGCGTTGGGAACGACGTCGGGCATAAGGGGTTTTCCCGACGCACCGTAG

Coding sequence (CDS)

ATGGAGTTTCCCGATGCCAAAAAAGACGTCGACACAAAGAACGTCGGGAATAAGGGTATTCTCGACACCATGCACACTGCGTCGGAAAAGGCATCGGGAAAAAGGGTATTCTCGACGCCCCAAGCACGCGTCATCCAACCGGCATTGGGAATAGGCCAAATTAAATTAAAAATACACCTTATTCCCGATGCCATGCAGAGTGCGTTGGGAACGACGTCGGGCATAAGGGGTTTTCCCGACGCACCGTAG

Protein sequence

MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHLIPDAMQSALGTTSGIRGFPDAP

Homology

[Close]

BLAST of IVF0020221 vs. ExPASy TrEMBL
Match: A0A5D3CT09 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00870 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL 60
          MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL
Sbjct: 1  MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL 60

Query: 61 IPDAMQ 67
          IPDAMQ
Sbjct: 61 IPDAMQ 66

[Close]

BLAST of IVF0020221 vs. ExPASy TrEMBL
Match: A0A5A7UL05 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001630 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL 60
          MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL
Sbjct: 1  MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL 60

Query: 61 IPDAMQ 67
          IPDAMQ
Sbjct: 61 IPDAMQ 66

[Close]

BLAST of IVF0020221 vs. ExPASy TrEMBL
Match: A0A5A7TAH2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001250 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.1e-19
Identity = 55/74 (74.32%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 3   FPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHLIP 62
           FPDAKKD+DTK V +KGILD MHTAS  AS KR+F TPQARV Q AL I QIKLKIHLI 
Sbjct: 113 FPDAKKDIDTKKVKSKGILDAMHTASRVASEKRLFLTPQARVGQTALEISQIKLKIHLIF 172

Query: 63  DAMQSALGTTSGIR 77
           DAMQS  G  SGIR
Sbjct: 173 DAMQSTSGAASGIR 186

[Close]

BLAST of IVF0020221 vs. ExPASy TrEMBL
Match: A0A5A7UVP6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005710 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 3   FPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHLIP 62
           F DAKKDVD KNVGNK IL+ M+TAS +ASG   F T Q R+ Q A  IGQIKL IHLIP
Sbjct: 63  FSDAKKDVDIKNVGNKCILNAMNTASGEASGIHFFPTHQTRIGQRASRIGQIKLNIHLIP 122

Query: 63  DAMQSALGTTSGIR 77
           DAMQS   + +G+R
Sbjct: 123 DAMQSV--SWNGVR 134

[Close]

BLAST of IVF0020221 vs. ExPASy TrEMBL
Match: A0A5A7SL49 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00400 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 37/55 (67.27%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 25  HTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHLIPDAMQSALGTTSGIRGFP 80
           H AS   S KRVF   QARV Q A  IGQIK KIHLIP+AM S  GT SGIRGFP
Sbjct: 75  HNASGVVSRKRVFPMCQARVGQTASRIGQIKFKIHLIPNAMHSVSGTVSGIRGFP 129

[Close]

BLAST of IVF0020221 vs. NCBI nr
Match: KAA0054221.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (339), Expect = 3.38e-35
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL 60
          MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL
Sbjct: 1  MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL 60

Query: 61 IPDAMQ 66
          IPDAMQ
Sbjct: 61 IPDAMQ 66

[Close]

BLAST of IVF0020221 vs. NCBI nr
Match: TYK15043.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (339), Expect = 3.89e-35
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL 60
          MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL
Sbjct: 1  MEFPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHL 60

Query: 61 IPDAMQ 66
          IPDAMQ
Sbjct: 61 IPDAMQ 66

[Close]

BLAST of IVF0020221 vs. NCBI nr
Match: KAA0039036.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 2.08e-24
Identity = 55/74 (74.32%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 3   FPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHLIP 62
           FPDAKKD+DTK V +KGILD MHTAS  AS KR+F TPQARV Q AL I QIKLKIHLI 
Sbjct: 113 FPDAKKDIDTKKVKSKGILDAMHTASRVASEKRLFLTPQARVGQTALEISQIKLKIHLIF 172

Query: 63  DAMQSALGTTSGIR 76
           DAMQS  G  SGIR
Sbjct: 173 DAMQSTSGAASGIR 186

[Close]

BLAST of IVF0020221 vs. NCBI nr
Match: KAA0058246.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 9.02e-18
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 3   FPDAKKDVDTKNVGNKGILDTMHTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHLIP 62
           F DAKKDVD KNVGNK IL+ M+TAS +ASG   F T Q R+ Q A  IGQIKL IHLIP
Sbjct: 63  FSDAKKDVDIKNVGNKCILNAMNTASGEASGIHFFPTHQTRIGQRASRIGQIKLNIHLIP 122

Query: 63  DAMQSALGTTSGIR 76
           DAMQS   + +G+R
Sbjct: 123 DAMQSV--SWNGVR 134

[Close]

BLAST of IVF0020221 vs. NCBI nr
Match: KAA0025195.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.50e-11
Identity = 37/55 (67.27%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 25  HTASEKASGKRVFSTPQARVIQPALGIGQIKLKIHLIPDAMQSALGTTSGIRGFP 79
           H AS   S KRVF   QARV Q A  IGQIK KIHLIP+AM S  GT SGIRGFP
Sbjct: 75  HNASGVVSRKRVFPMCQARVGQTASRIGQIKFKIHLIPNAMHSVSGTVSGIRGFP 129

The following BLAST results are available for this feature:

BLAST of IVF0020221 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CT09	3.6e-28	100.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UL05	3.6e-28	100.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TAH2	3.1e-19	74.32	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UVP6	2.5e-13	63.51	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SL49	1.9e-08	67.27	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0020221 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054221.1	3.38e-35	100.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK15043.1	3.89e-35	100.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0039036.1	2.08e-24	74.32	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0058246.1	9.02e-18	63.51	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0025195.1	2.50e-11	67.27	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020221 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020221.1	IVF0020221.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016758	hexosyltransferase activity