IVF0020216 (gene) Melon (IVF77) v1

Overview
NameIVF0020216
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr11: 15918015 .. 15918278 (+)
RNA-Seq ExpressionIVF0020216
SyntenyIVF0020216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGAATCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGAAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGAATCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGAAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGAATCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGAAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

Protein sequence

MTLVEVVLKGPKRHPLTYPRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFIENNPYRRLTVARSEGREA
Homology
BLAST of IVF0020216 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 19  PRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFIENNPYRRLT 78
           P++ KLSP KPAAG ENLSVNS+LPSREKSRAISYSNIQT IGCSNIR+FIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 337 VTRSGGRKA 345

BLAST of IVF0020216 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 19  PRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFIENNPYRRLT 78
           P++ KLSP KPAAG ENLSVNS+LPSREKSRAISYSNIQT IGCSNIR+FIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 191 VTRSGGRKA 199

BLAST of IVF0020216 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.8e-20
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 10  GPKRHPLTYPRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFI 69
           G KRHPLTYPRKGKL PNKP A  EN SVNS+LPSREKSRAISYSNIQT IGCSNIR+FI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 77
           E NP RR
Sbjct: 136 E-NPERR 141

BLAST of IVF0020216 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 19  PRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFIENNPYRRLT 78
           P++ KLSP +PAA  ENLSVNS LPSREKSR ISYSNIQT IGCSNIR+FIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 206 VTRSGGRKA 214

BLAST of IVF0020216 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 19  PRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFIENNPYRRLT 78
           P++ KLSP +P A  EN SV S LPS+EKSRAI+YSNIQ  IGCSNIR+FIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 170 VTRSGGRKA 178

BLAST of IVF0020216 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 1.94e-29
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 19  PRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFIENNPYRRLT 78
           P++ KLSP KPAAG ENLSVNS+LPSREKSRAISYSNIQT IGCSNIR+FIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 191 VTRSGGRKA 199

BLAST of IVF0020216 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 4.32e-28
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 19  PRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFIENNPYRRLT 78
           P++ KLSP KPAAG ENLSVNS+LPSREKSRAISYSNIQT IGCSNIR+FIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 337 VTRSGGRKA 345

BLAST of IVF0020216 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 8.15e-26
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 19  PRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFIENNPYRRLT 78
           P++ KLSP +PAA  ENLSVNS LPSREKSR ISYSNIQT IGCSNIR+FIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 206 VTRSGGRKA 214

BLAST of IVF0020216 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 3.17e-25
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 10  GPKRHPLTYPRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFI 69
           G KRHPLTYPRKGKL PNKP A  EN SVNS+LPSREKSRAISYSNIQT IGCSNIR+FI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 76
           EN P RR
Sbjct: 136 EN-PERR 141

BLAST of IVF0020216 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 3.46e-23
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 19  PRKGKLSPNKPAAGIENLSVNSLLPSREKSRAISYSNIQTRIGCSNIRKFIENNPYRRLT 78
           P++ KLSP +P A  EN SV S LPS+EKSRAI+YSNIQ  IGCSNIR+FIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 170 VTRSGGRKA 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TNL72.4e-2284.06NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7ULW22.4e-2284.06NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UMJ93.8e-2083.58NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7SQ801.1e-1978.26NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UGC72.3e-1772.46NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
KAA0054655.11.94e-2984.06NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0043181.14.32e-2884.06NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0032698.18.15e-2678.26NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0057143.13.17e-2583.58NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0054224.13.46e-2372.46NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020216.1IVF0020216.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane