IVF0020180 (gene) Melon (IVF77) v1

Overview


Name	IVF0020180
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr02: 10236474 .. 10236818 (+)
RNA-Seq Expression	IVF0020180
Synteny	IVF0020180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAACATGGGGAGAGACTGATCAAGGATTTTTGGTACGAGCCTTAGGGAGCTACTTTGATCTAGTGGAATTTCACATAACTGTCGTCGCAAATGACCAACTTGAGGAATTATATGCTCTGCCAAGCAAACTTTTGAAATTGTTTGTTCTACCTACCGAATTGCCATTAGTTCGAGAAGTAGACCACTCGATTAACATTGTGGAAGGAGCACATGTAGTGAATGTAAGGAAATATCACTACACTCATCATTAGAAAAACGAGATTGAGAAGATAGTTGATGATATGCTACAAGCAGGAATTATACAACCAAGTGTGAGTCCTTATTCAAGCCCAGTTTAA

mRNA sequence

ATGATGAAAACATGGGGAGAGACTGATCAAGGATTTTTGGTACGAGCCTTAGGGAGCTACTTTGATCTAGTGGAATTTCACATAACTGTCGTCGCAAATGACCAACTTGAGGAATTATATGCTCTGCCAAGCAAACTTTTGAAATTGTTTGTTCTACCTACCGAATTGCCATTAGTTCGAGAAGTAGACCACTCGATTAACATTGTGGAAGGAGCACATGTAGTGAATAAAAACGAGATTGAGAAGATAGTTGATGATATGCTACAAGCAGGAATTATACAACCAAGTGTGAGTCCTTATTCAAGCCCAGTTTAA

Coding sequence (CDS)

ATGATGAAAACATGGGGAGAGACTGATCAAGGATTTTTGGTACGAGCCTTAGGGAGCTACTTTGATCTAGTGGAATTTCACATAACTGTCGTCGCAAATGACCAACTTGAGGAATTATATGCTCTGCCAAGCAAACTTTTGAAATTGTTTGTTCTACCTACCGAATTGCCATTAGTTCGAGAAGTAGACCACTCGATTAACATTGTGGAAGGAGCACATGTAGTGAATAAAAACGAGATTGAGAAGATAGTTGATGATATGCTACAAGCAGGAATTATACAACCAAGTGTGAGTCCTTATTCAAGCCCAGTTTAA

Protein sequence

MMKTWGETDQGFLVRALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPLVREVDHSINIVEGAHVVNKNEIEKIVDDMLQAGIIQPSVSPYSSPV

Homology

[Close]

BLAST of IVF0020180 vs. ExPASy Swiss-Prot
Match: P92522 (Uncharacterized mitochondrial protein AtMg00850 OS=Arabidopsis thaliana OX=3702 GN=AtMg00850 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.9e-04
Identity = 19/47 (40.43%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 58  LVREVDHSINIVEGAHVVNKNEIEKIVDDMLQAGIIQPSVSPYSSPV 105
           L +E +   +++ G H++ +  ++  + +ML+A IIQPS+SPYSSPV
Sbjct: 23  LRKEQNQLTSVLTGIHILRRTRLKNWLGEMLEARIIQPSISPYSSPV 69

[Close]

BLAST of IVF0020180 vs. ExPASy TrEMBL
Match: A0A5A7TNU6 (Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00780 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 66/116 (56.90%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHI-TVVANDQLEELYALPSKLLKLFVLPTELP 60
           M K WGE DQGFLV  R L  Y D  + HI T  ANDQ EELYAL S+  KLFVLPTELP
Sbjct: 69  MTKAWGEIDQGFLVECRDLEGYIDPGDIHITTTTANDQPEELYALLSEFSKLFVLPTELP 128

Query: 61  LVREVDHSINIVEGAHVV---------NKNEIEKIVDDMLQAGIIQPSVSPYSSPV 105
            VREVD+ + + +   V+          KNEIEK++DDMLQ G IQPS SPYS+P+
Sbjct: 129 PVREVDNRLILWKEHKVIVRPCRYAHHQKNEIEKMIDDMLQVGTIQPSGSPYSNPM 184

[Close]

BLAST of IVF0020180 vs. ExPASy TrEMBL
Match: A0A5A7T836 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002620 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.3e-13
Identity = 49/116 (42.24%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPL 60
           ++KTW   DQGFLV  RA+G      E  +T    D   E   L  +   +F +P  LPL
Sbjct: 28  LVKTWQPDDQGFLVNFRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGDVFEMPDGLPL 87

Query: 61  VREVDHSINIVEGAHVVN----------KNEIEKIVDDMLQAGIIQPSVSPYSSPV 105
           +R +DH I + EG   +N          KNEIE++V+DML +GII+PS SP+SSPV
Sbjct: 88  MRRIDHRIQLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPV 143

[Close]

BLAST of IVF0020180 vs. ExPASy TrEMBL
Match: A0A5D3BIM8 (Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001530 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPL 60
           ++KTW   DQGFLV  RA+G +    E  +T    D   E   L  +   +F +P +LP 
Sbjct: 98  LVKTWQPDDQGFLVNFRAMGIFKTDRELVVTDSVEDYQPEFEQLQQEFDDIFEMPDDLPP 157

Query: 61  VREVDHSINIVEGAHVVN----------KNEIEKIVDDMLQAGIIQPSVSPYSSPV 105
           +R+++H I + EG   +N          KNEIE++V+DML +GII+PS SP+SSPV
Sbjct: 158 MRQINHRIQLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPV 213

[Close]

BLAST of IVF0020180 vs. ExPASy TrEMBL
Match: A0A5A7UPE1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001610 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.0e-12
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPL 60
           ++KTW   DQGFLV  RA+G      E  +T    D   E   L  +   +F +P  LP 
Sbjct: 284 LVKTWQPDDQGFLVNFRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGDVFEMPDGLPP 343

Query: 61  VREVDHSINIVEGAHVVN----------KNEIEKIVDDMLQAGIIQPSVSPYSSPV 105
           +R +DH I + EG   +N          KNEIE++V+DML +GII+PS SP+SSPV
Sbjct: 344 MRRIDHRIQLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPV 399

[Close]

BLAST of IVF0020180 vs. ExPASy TrEMBL
Match: A0A5D3BL18 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00070 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPL 60
           ++KTW   DQGFL+  RA+G      E  +T    D   +   L  +   +F +P ELP 
Sbjct: 492 LVKTWKPDDQGFLINFRAMGISKANQELVVTDSMEDFQLKFEQLQQEFSDIFDMPDELPP 551

Query: 61  VREVDHSINIVEGAHVVN----------KNEIEKIVDDMLQAGIIQPSVSPYSSPV 105
           +R++DH I + EG   +N          KNEIE++V+DML +GII+PS +P+SSPV
Sbjct: 552 MRQIDHRIQLKEGTDPINMRPYRYPHAQKNEIERLVNDMLASGIIRPSTNPFSSPV 607

[Close]

BLAST of IVF0020180 vs. NCBI nr
Match: KAA0045042.1 (pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa] >TYJ96285.1 pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 2.15e-27
Identity = 66/116 (56.90%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHITVV-ANDQLEELYALPSKLLKLFVLPTELP 60
           M K WGE DQGFLV  R L  Y D  + HIT   ANDQ EELYAL S+  KLFVLPTELP
Sbjct: 69  MTKAWGEIDQGFLVECRDLEGYIDPGDIHITTTTANDQPEELYALLSEFSKLFVLPTELP 128

Query: 61  LVREVDHSINIVEGAHVV---------NKNEIEKIVDDMLQAGIIQPSVSPYSSPV 104
            VREVD+ + + +   V+          KNEIEK++DDMLQ G IQPS SPYS+P+
Sbjct: 129 PVREVDNRLILWKEHKVIVRPCRYAHHQKNEIEKMIDDMLQVGTIQPSGSPYSNPM 184

[Close]

BLAST of IVF0020180 vs. NCBI nr
Match: TYJ98541.1 (pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 4.15e-15
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPL 60
           ++KTW   DQGFLV  RA+G +    E  +T    D   E   L  +   +F +P +LP 
Sbjct: 98  LVKTWQPDDQGFLVNFRAMGIFKTDRELVVTDSVEDYQPEFEQLQQEFDDIFEMPDDLPP 157

Query: 61  VREVDHSINIVEGAHVVN----------KNEIEKIVDDMLQAGIIQPSVSPYSSPV 104
           +R+++H I + EG   +N          KNEIE++V+DML +GII+PS SP+SSPV
Sbjct: 158 MRQINHRIQLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPV 213

[Close]

BLAST of IVF0020180 vs. NCBI nr
Match: KAA0038376.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 5.44e-15
Identity = 49/116 (42.24%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPL 60
           ++KTW   DQGFLV  RA+G      E  +T    D   E   L  +   +F +P  LPL
Sbjct: 28  LVKTWQPDDQGFLVNFRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGDVFEMPDGLPL 87

Query: 61  VREVDHSINIVEGAHVVN----------KNEIEKIVDDMLQAGIIQPSVSPYSSPV 104
           +R +DH I + EG   +N          KNEIE++V+DML +GII+PS SP+SSPV
Sbjct: 88  MRRIDHRIQLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPV 143

[Close]

BLAST of IVF0020180 vs. NCBI nr
Match: KAA0056980.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 4.85e-14
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPL 60
           ++KTW   DQGFLV  RA+G      E  +T    D   E   L  +   +F +P  LP 
Sbjct: 284 LVKTWQPDDQGFLVNFRAMGIPKADRELVVTDAVEDYQSEFAQLQQEFGDVFEMPDGLPP 343

Query: 61  VREVDHSINIVEGAHVVN----------KNEIEKIVDDMLQAGIIQPSVSPYSSPV 104
           +R +DH I + EG   +N          KNEIE++V+DML +GII+PS SP+SSPV
Sbjct: 344 MRRIDHRIQLKEGTDPINVRPYRYPHAQKNEIERLVNDMLASGIIRPSTSPFSSPV 399

[Close]

BLAST of IVF0020180 vs. NCBI nr
Match: TYJ99421.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 8.99e-14
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 1   MMKTWGETDQGFLV--RALGSYFDLVEFHITVVANDQLEELYALPSKLLKLFVLPTELPL 60
           ++KTW   DQGFL+  RA+G      E  +T    D   +   L  +   +F +P ELP 
Sbjct: 492 LVKTWKPDDQGFLINFRAMGISKANQELVVTDSMEDFQLKFEQLQQEFSDIFDMPDELPP 551

Query: 61  VREVDHSINIVEGAHVVN----------KNEIEKIVDDMLQAGIIQPSVSPYSSPV 104
           +R++DH I + EG   +N          KNEIE++V+DML +GII+PS +P+SSPV
Sbjct: 552 MRQIDHRIQLKEGTDPINMRPYRYPHAQKNEIERLVNDMLASGIIRPSTNPFSSPV 607

[Close]

BLAST of IVF0020180 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 7.0e-05
Identity = 19/47 (40.43%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 58  LVREVDHSINIVEGAHVVNKNEIEKIVDDMLQAGIIQPSVSPYSSPV 105
           L +E +   +++ G H++ +  ++  + +ML+A IIQPS+SPYSSPV
Sbjct: 23  LRKEQNQLTSVLTGIHILRRTRLKNWLGEMLEARIIQPSISPYSSPV 69

The following BLAST results are available for this feature:

BLAST of IVF0020180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92522	9.9e-04	40.43	Uncharacterized mitochondrial protein AtMg00850 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of IVF0020180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNU6	1.9e-21	56.90	Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7T836	9.3e-13	42.24	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BIM8	1.2e-12	40.52	Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7UPE1	6.0e-12	41.38	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BL18	1.0e-11	39.66	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of IVF0020180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045042.1	2.15e-27	56.90	pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa] >TYJ96285....	[more]
TYJ98541.1	4.15e-15	40.52	pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]	[more]
KAA0038376.1	5.44e-15	42.24	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056980.1	4.85e-14	41.38	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99421.1	8.99e-14	39.66	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020180 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	7.0e-05	40.43	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 53..104 e-value: 7.6E-7 score: 31.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 52..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020180.2	IVF0020180.2	mRNA