IVF0020133 (gene) Melon (IVF77) v1

Overview


Name	IVF0020133
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	WD repeat-containing protein RUP2-like
Location	chr12: 9384341 .. 9384667 (+)
RNA-Seq Expression	IVF0020133
Synteny	IVF0020133

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTGCGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGAATGCACCTTGGTAGCTGGCGGGTCGGATGGCGTTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTTTTTTTGA

mRNA sequence

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTGCGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGAATGCACCTTGGTAGCTGGCGGGTCGGATGGCGTTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTTTTTTTGA

Coding sequence (CDS)

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTGCGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGAATGCACCTTGGTAGCTGGCGGGTCGGATGGCGTTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTTTTTTTGA

Protein sequence

MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF

Homology

[Close]

BLAST of IVF0020133 vs. ExPASy Swiss-Prot
Match: Q9FFA7 (WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 7.8e-36
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  E+G   RV+RT EGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV 
Sbjct: 263 LWSVEDG---RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVD 322

Query: 61  EFDG-GMGSGYG--LVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKK 106
            F+  GM SG     VSSVCWRQ G  +CTLVAGGSDGVLQV+VG +K
Sbjct: 323 GFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 367

[Close]

BLAST of IVF0020133 vs. ExPASy Swiss-Prot
Match: Q9LTJ6 (WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-27
Identity = 61/96 (63.54%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 9   GARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGM 68
           G RVVRT  GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         
Sbjct: 287 GRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRF 346

Query: 69  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVG 103
           GS    VSSVC RQV E  CTLVAGGSDG L++F G
Sbjct: 347 GSDRRFVSSVCLRQVDEDWCTLVAGGSDGALEIFSG 382

[Close]

BLAST of IVF0020133 vs. ExPASy Swiss-Prot
Match: P93471 (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-08
Identity = 34/95 (35.79%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 13  VRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT  GH N ++FVGL+V  +   I CGSE   VFVY K   +P+    F      D   
Sbjct: 580 VRTFRGHANEKNFVGLTV--RSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAED 639

Query: 73  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 640 EAGSYFISAVCWK---SDRPTILTANSQGTIKVLV 669

[Close]

BLAST of IVF0020133 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 32/95 (33.68%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 13  VRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT  GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D   
Sbjct: 583 VRTFRGHTNEKNFVGLTV--NSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 642

Query: 73  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 643 EAGSYFISAVCWK---SDSPTMLTANSQGTIKVLV 672

[Close]

BLAST of IVF0020133 vs. ExPASy Swiss-Prot
Match: Q9LJR3 (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 33/89 (37.08%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 18  GHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------GMGSGY 77
           GH N ++FVGLSV    G I  GSE   VFVY K +  P+    F+         +    
Sbjct: 757 GHTNLKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDAS 816

Query: 78  GLVSSVCWRQVGEQECTLVAGGSDGVLQV 100
             +SS+CWR    Q  TLVA  S+G +++
Sbjct: 817 QFISSICWR---GQSSTLVAANSNGNIKI 840

[Close]

BLAST of IVF0020133 vs. ExPASy TrEMBL
Match: A0A5D3E556 (WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003610 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.6e-58
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF
Sbjct: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 108

[Close]

BLAST of IVF0020133 vs. ExPASy TrEMBL
Match: A0A5A7T553 (WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G00140 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.2e-57
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 268 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 327

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKR F
Sbjct: 328 EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRSF 375

[Close]

BLAST of IVF0020133 vs. ExPASy TrEMBL
Match: A0A5A7T240 (WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00620 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.4e-56
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRF 108
           EFDGGMGSGYGLVSSVCWRQVGEQ CTLVAGGSDG+LQVFVGHKK F
Sbjct: 61  EFDGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKSF 107

[Close]

BLAST of IVF0020133 vs. ExPASy TrEMBL
Match: A0A0A0LHK2 (Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.0e-54
Identity = 105/116 (90.52%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRT EGHVNGRSFVGLSVWR+GGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 270 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWREGGLIGCGSEDKRVFVYDKRWGEPIWVK 329

Query: 61  EFDG--------GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           EFDG        GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKR F
Sbjct: 330 EFDGGVGVGVGVGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRSF 385

[Close]

BLAST of IVF0020133 vs. ExPASy TrEMBL
Match: A0A6J1GKZ5 (WD repeat-containing protein RUP2-like OS=Cucurbita moschata OX=3662 GN=LOC111455289 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 95/112 (84.82%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MWKTEE----GGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEP 60
           MWK EE    GGGARVVRT EGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGE 
Sbjct: 246 MWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKRVFVYDKRWGEA 305

Query: 61  IWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           +WV+EFD  +GSGYGLVSSVCWRQVGE ECTLVAGGSDGVL+VFVG KKR F
Sbjct: 306 VWVEEFD-RVGSGYGLVSSVCWRQVGEDECTLVAGGSDGVLKVFVGEKKRSF 356

[Close]

BLAST of IVF0020133 vs. NCBI nr
Match: TYK31084.1 (WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (587), Expect = 2.28e-76
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 108
           EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF
Sbjct: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 108

[Close]

BLAST of IVF0020133 vs. NCBI nr
Match: KAA0035439.1 (WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (567), Expect = 1.02e-71
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRF 107
           EFDGGMGSGYGLVSSVCWRQVGEQ CTLVAGGSDG+LQVFVGHKK F
Sbjct: 61  EFDGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKSF 107

[Close]

BLAST of IVF0020133 vs. NCBI nr
Match: KAA0038490.1 (WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa])

HSP 1 Score: 227 bits (579), Expect = 1.71e-71
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 268 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 327

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 108
           EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKR F
Sbjct: 328 EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRSF 375

[Close]

BLAST of IVF0020133 vs. NCBI nr
Match: XP_004148378.3 (LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Cucumis sativus])

HSP 1 Score: 218 bits (554), Expect = 1.33e-67
Identity = 105/116 (90.52%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRT EGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 270 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRXGGLIGCGSEDKRVFVYDKRWGEPIWVK 329

Query: 61  EFDGG--------MGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 108
           EFDGG        MGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKR F
Sbjct: 330 EFDGGVGVGVGVGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRSF 385

[Close]

BLAST of IVF0020133 vs. NCBI nr
Match: KAA0056674.1 (WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (482), Expect = 1.31e-59
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
          MWKTEEGGGARVVRT EGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 1  MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60

Query: 61 EFDGGMGSGYGLVSSVCWRQVGEQECTLV 89
          EFDGGMGSGYGLVSSVCWRQVGEQECTL+
Sbjct: 61 EFDGGMGSGYGLVSSVCWRQVGEQECTLL 89

[Close]

BLAST of IVF0020133 vs. TAIR 10
Match: AT5G23730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 151.0 bits (380), Expect = 5.5e-37
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  E+G   RV+RT EGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV 
Sbjct: 263 LWSVEDG---RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVD 322

Query: 61  EFDG-GMGSGYG--LVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKK 106
            F+  GM SG     VSSVCWRQ G  +CTLVAGGSDGVLQV+VG +K
Sbjct: 323 GFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 367

[Close]

BLAST of IVF0020133 vs. TAIR 10
Match: AT5G52250.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 123.6 bits (309), Expect = 9.5e-29
Identity = 61/96 (63.54%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 9   GARVVRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGM 68
           G RVVRT  GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         
Sbjct: 287 GRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRF 346

Query: 69  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVG 103
           GS    VSSVC RQV E  CTLVAGGSDG L++F G
Sbjct: 347 GSDRRFVSSVCLRQVDEDWCTLVAGGSDGALEIFSG 382

[Close]

BLAST of IVF0020133 vs. TAIR 10
Match: AT2G32950.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 32/95 (33.68%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 13  VRTCEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT  GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D   
Sbjct: 583 VRTFRGHTNEKNFVGLTV--NSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 642

Query: 73  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 643 EAGSYFISAVCWK---SDSPTMLTANSQGTIKVLV 672

[Close]

BLAST of IVF0020133 vs. TAIR 10
Match: AT3G15354.1 (SPA1-related 3 )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 33/89 (37.08%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 18  GHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------GMGSGY 77
           GH N ++FVGLSV    G I  GSE   VFVY K +  P+    F+         +    
Sbjct: 749 GHTNLKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDAS 808

Query: 78  GLVSSVCWRQVGEQECTLVAGGSDGVLQV 100
             +SS+CWR    Q  TLVA  S+G +++
Sbjct: 809 QFISSICWR---GQSSTLVAANSNGNIKI 832

[Close]

BLAST of IVF0020133 vs. TAIR 10
Match: AT1G53090.1 (SPA1-related 4 )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 34/89 (38.20%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 18  GHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF-------DGGMGSGY 77
           GH N ++FVGLSV    G I  GSE   VFVY K +  P+   +F       +  +    
Sbjct: 707 GHTNVKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDAS 766

Query: 78  GLVSSVCWRQVGEQECTLVAGGSDGVLQV 100
             +SSVCWR    Q  TLVA  S G +++
Sbjct: 767 QFISSVCWR---GQSSTLVAANSTGNIKI 790

The following BLAST results are available for this feature:

BLAST of IVF0020133 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFA7	7.8e-36	65.74	WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 S...	[more]
Q9LTJ6	1.3e-27	63.54	WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 S...	[more]
P93471	4.0e-08	35.79	E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1	[more]
P43254	2.6e-07	33.68	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV...	[more]
Q9LJR3	1.7e-06	37.08	Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1	[more]

BLAST of IVF0020133 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E556	2.6e-58	99.07	WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7T553	2.2e-57	98.15	WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7T240	5.4e-56	96.26	WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LHK2	1.0e-54	90.52	Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV...	[more]
A0A6J1GKZ5	1.2e-47	84.82	WD repeat-containing protein RUP2-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of IVF0020133 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31084.1	2.28e-76	99.07	WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]	[more]
KAA0035439.1	1.02e-71	96.26	WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]	[more]
KAA0038490.1	1.71e-71	98.15	WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]	[more]
XP_004148378.3	1.33e-67	90.52	LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Cucumis sativus]	[more]
KAA0056674.1	1.31e-59	97.75	WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020133 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23730.1	5.5e-37	65.74	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G52250.1	9.5e-29	63.54	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G32950.1	1.9e-08	33.68	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G15354.1	1.2e-07	37.08	SPA1-related 3	[more]
AT1G53090.1	1.6e-07	38.20	SPA1-related 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..101 e-value: 4.4E-18 score: 67.3
IPR044616	WD repeat-containing protein RUP1/2	PANTHER	PTHR45389	WD REPEAT-CONTAINING PROTEIN RUP1	coord: 1..106
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 11..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020133.1	IVF0020133.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010224	response to UV-B
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005515	protein binding