IVF0020129 (gene) Melon (IVF77) v1

Overview


Name	IVF0020129
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerase III subunit RPC5 isoform X1
Location	chr07: 20761096 .. 20768773 (-)
RNA-Seq Expression	IVF0020129
Synteny	IVF0020129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTGGACGGCCTAGACGAACGGAGCCAGGTACCATCACGGACCTCCAGATTCGCACCCAAGTCCTCTAAATTCAAGCCGAAACCAAAGTCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTCAACCTCCAGTTTCTAAGCCGGAAGTTGTAGAGCCTGATGCTCAAATTGGGGAGAAGAAGGAAGACGGTGAAGAAGTTGAAGTAAAACCTAAAGTTGAATCCTCACTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGTCGGAAGTTGAAGAGGATACAATGGTGGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGTGAAATTGACGTTCTATTTACTCCTTCAGTTGATAGCAATTCGAAAGTTAGTCTTCGTTGCCTTTGTATTTCGTACCTTGTACCATTATTTAGTTCGTTTTGAAATTTTAACTTGACTGTCATCTATTTCCAGTTATATGTATTGCAATATCCTCTTAGACCACGTTGGAGGCCCTATGAATTTGAGGGGCGATGTGACGAGGTGAGCATTTTTTTTAATTCCTTATTGTTCTGGAAGAATTTGAACTGTACTCTTTTAGCTTCAACAGGTAAGAGTTAAACCAAGCACCGGAGAAGTGGAAATCGACCTGAATGTTGATATTGAATCCAATAACTATGACAGCAAAGCTGATGACACATTCCAAATGAAGAAGCAGGTATCTTCTCTTACTGTTCTGTTGATTTAAATTGCTGTGAATTCATCCATATTTAGGGATTTACTAGGATTACTGGTCTGGTTCATTTGTGTGATTGAGCTTGCAGATCGTGTCAGGTTTAACTTGAAAAAACATGCTACATTCCTTAAGATTTTTCCAAAAGATAAACAGTGATAGTTTTTTGAAACCGAATTCAGCAACAGTTTCTAGTTGAATCTATGTTCTTTTCTTTCTTTTTTTCACCGTCGTATTATTCTCGAGTTTGTTCTCACTTTATCAACTTAACTATGTTTCACCTAGTAATTGGTCATGGGCTATTTCTTTCATGTACTATATTCAACAGAAGATTGATTTATTGGCAGTGTATTTTTGTGGATACCAATAAAATTTTATATTTGGTTCAGACTTTGACATCTTCATGGCAACCGCCTCTAGCTACGTCCTATGCTGTTGGGCTGCTTATGGGCAATAAGGTTGCTTCTCTATCTCTTATCTTTTGAACTGCATACCTTTTCTTTTCTTCTTCTTCTTTTTATGATTGACATTGAATCAACCGTAGTTGATGGACCCTTCATTTCTTCATTGTTCTGGCACTCAGTCATTTCTAATTTTGAATCAGCAAAAGTAAGGATAGTGGTAAGCAAGAATAATAAAGTGCTTGGAGGAAGTAGGTTTAAGCCATGGTGACCTTACCTTAGATTTAATATACTATGAGCTTTATTTGGAATGTAGTAGGGTTAGACAGGGCCCCATGAGAATAGACAAGTTACACAAATGACTCAGACTCTCACATAAACAGCAAAGAATAATATTGAAATATTAAGTAACCATGAATAAACTAAACCATCCAAAGTAACGAAATTAGTTACAAACATGTTAAACATCCCCCCGGAAACCGAATCCTACAACTCAAAAGGTTTCCATAAAAGTTAAGATTATTGGAGGAATAGTTACAAACACTTCTTACAAATTACAGTATGAGCTCACATTTCGCTTAACAATATCGTATTTTCCTACCAATTTGCCTTCAAATGTCTATATTCTTAAATTTTGTCTTCTTAAAACTTTGATGGTGAAGGAAATGGAAAATATGTAAAATCTTGGCATGTGTCGCCCTTTTCTCGATAGGAAAACAACAGATATTTTGGTCTTTTGTCGTCATTGCTTGGAGACTTTTTTTTGTTTTACTAAGGAGAAGGGATTTTTGTTTGTGGGGCCTCAATCCTGCGGTGGGATTTTCTTGCAAATACTCTTTTTGTTGTTTAGTGAACCATTTCCCTGCCGTTCCCATCCATCCCACTATTTTGTTGCTATGAAAGACTAAAATTTCTTGAAGGTTATAGTTTTCGTTCGAGAAGTTCTTCACGATAGAGTTTATACTTTAGATCACATTATGAGGATCTTATACTGTTGTATCTGTAATTGATTGAATGGAAAACCTAGATTTTGTACTTGGGTCAAATTGGTCCTTTTCTTCTAACTAATTAGCATGAACGCAAGAAGACCATAGGTTCCTGCTTATTCCCCTAATCTTATGATGATTATCAAATCATTTGTCAAATTTTAGAACAAGGACTTGTTTGTTTCGATTTCCTTTAAAAGTAAATAACTATTGCTAGTGTATCTATGCGTATATTGCAGCTACACCTGAATCCCGTACATGCAGTTGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGTCCGAAAAGGAAAAATAACATTAGAGCTGATTCAGATGTTAAGTCAGAAGAGCATGTGGATGTTAATTCTGCAGGTGCATCAAGGAAGCAGGTTATTTTCTATTTTTTCTATTCCATTCTAAAATACTGCTGAAATATACTGAAATTTATCTTGAGAAATCTGCTGAATCGCCGATCGTGTTTATTTGGATTTTGGTAACTGTAAAGTATAATCATAATAACAATTATTGTTATTATTTTTATAGGGAATAAAATCATTTAATAGCTAGAAACCTCTGGGGCTATGTTGGTAGGGCTTTCCTTGGCTTTGTTGGATGGAAAGGAACAAAAGTTTTATTTGAAGACAAGTTACTGATTTTATTTCTTTTTGTGGCAACTTTCAGCTATTATTAGGCGCTTGGTCGTGTCACACTTACAATCTATCCTTTTTAATTATTTTGTTTAGGTTTTGTTTGGTAACCATTTTATTTTGGTTTTTGGAAACTAAGTATATTTTTCCTCAATTGCTAACACGACTTTCATCTTTCTAGAGTAAAAAAAGTTGAATTCTTAGTCAAAATTTGAAAACTATAACAATTTTTTAAAAACTATTATTGGCGGTCACAAGGGTATTTACCCTTATTGGAAGACTTGTTTTTGTTTTGTTTTGTTTTTTTTTTGCAACTTACCTTATTCCTTTGAGTGGTCTGTTCTTATTTTATTTATTTATTTATTTTTTCATTAGCTAACTTACTGTCTACTGACCTTATCATTGTATTGCATTGGTTCACATCTGGGATTACATATTTTGTTCTGGTATTTATGGATTTTTGTATTGTTTCCATGGAACAGAAGAAGCAAACAGGACCTTCAACGGAACTTAAAACTAGAGATGAGGAGGTAAACACCATTGAAAATGAATGCTCAGTAGTGTAGGTTTAAGATAGTTTCTGAGAAAAGTATTTTTTAGTGGGAGTTTCTTCCCCTGCACTTGTAGAAGAATTACTTATTAAGTGATGCTTCTAAAAGCAGTTTTAGTGCTTTTTAAGTGTTAGGTTTTTCAACATTATTTTTAACTATAGAATGACACACCTTGAAAATTTTGAAAGATGTTTTTAATTGACAAAAAAGGAGAGATGATCTTATGAACTAACTAAGAGATCATGAGTTTATTCTATGGTGGCCACCTTCTCAGACACTCAAATGTTGCAAGGTTAGATGGGTTGTTCCGTAACCGTATTATTAGCGAAATGCGCATAAGCTGGTCTAGACGGACGAATATTAAAAATTGACAAATATTTTCACCCTTTTTCTTCTTTGAAGGAAACATAACTTATCCTTGAGGTAATGAAAAGAGATAATTACTCAAAGTACAAGTAAACAAATGATAAAACATGTAGATTTAAACAATCAAAGACAAGACTATCAACCTTAGGTATGATTGCCTTAATGTTAAATCCATCATTTTATAGTTGTCTAAAATTGTTTTGTTCACTTTTTCTCTCTAGTGCTGGATTCCACTCAAGTACTATGGCTTAGAAAGTGATCTATCAACCAGACATCTGCAAAGCATGGTGTCACAAACAGTTTCCCCTATGCAATTTTCAATGAGTCCGTAAGTGTTTTTTGCTTTTATGCATCAAATCTTTAATACAGTAAATTTCATCTATCTGATAATATTTTTATTTTTTGAGTAATTGATTTCGTTCCTGCTTATTTAAGGCACGACTATATGGACTCCTTGTGTCCTGGTACGAGTACAAGCAGCAACAAGCCCAAAGGTCCATCTAAAAAGTAAACACAATTACATGTTCAGCTGTTTGATTTATGTTACTGAACATTTAAGTAGTCAGGCAACTGGTTGCAAGAAGTTATCAGGGAGACTTCTAGTATTGATAATGTTTTAATCCTACTTATGGACATTTCAGGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTCACCGAGGTTTGTTTTAAATAAATACTTGTAAAATTTTTATCCCTGATGCATTTGCATATCTACTATAGCATCTAACTTCTATGCATTATTTGTTGGGCGTATTTTATGCTTTCATAATTCGTCAAACATTTTTTATTATCATTTAATTTACTGTCAAATTGTACTCACAACTTAATCAAAGGAATCTTGTCAAATATGCTACTTAATTTTCTAAGTCGTTAGTATCATTTTTTTAGCATTCGGGTCTTGAGAAAACTGTGTGACTCTACTACATTTAGTTGTCAAGAAAACTTATAGTATATTGTGTGACTCTACTACATTTAGTTGTCAAGAAAACTTGTAGGATATTAAATCCTAAGTTGACTGTAATTTGAACTAATTCTTTCTACGTTCTTTACCATTTTCATTGTTCACAAAGACTACCAGACCATATGGTGGGTATTGTCGGTATTTTTTTTAAAATATATAACGTAGCTTCTGTTCTATTTTATTTATTTATTTATTTCTATAAGAAACAATTTCATTGATCGAATAAAGTATCCAACGCTATCCGAAAATGAAAAAAAAAAAAAAAGAAATACTAGAGGAACGAGAAAAAAAGATTGGGTGGATGTCTTCAGAATGGCTAAGTTTCATCGTTCTTCATGGTGCAAACTTTTTTCTAATTATATTTCTTTTTTTTCTTTTTTGTTCTTATGGATGGTACGTTTATGTGATATTTCATTTTTCTTTCCGCTGGGATAATGCTGCTGTAAATGTGAAACATGGAGTTGAATTGAGCACATTTCCATTTCTTTGTTTTCAGTAACTTTGGGTATTTGAAATTCCAGTTCCTTCCCTGGAATTTGTTTCCTTTTTCAAATTTACCAACAAAAATTTTTCTTTCATTTAAAAGATAAAAAACATAGTCAAAATTCTCTATGATCATTAGTTAGCTATACCAACATGGTGGAGGGATATGAACTGTATGATGTTCACACCAGTGTTGGTGTCCTTACCTGTGTTTTTTAAGAAGGAAATGATGCTGGCGTTTTATTAGAAAGTGTATTTACTGCTTCCTCTGACACGTCTGATTAAAAAATGATTCAAATTAAAGGACCCATAGTAAGAAAAGAAAAATGGCTGGGCTTAGACATGATTTTGAAAATGAAGTATGACTGCGGCTACTGCTTTAGAAGTGGATCATATTTTCCATCAATGCGTCATTTTTAAATGTTGGTTCTTTTTGTTTCATATAAGCTTTTAAAAAAAGTTGCGAATACTTTTCAGTTTTCACATTTGCAATTGGGAGATATTTTACCTCCTTTCCCCGGTTAATCAAAATATAGTTTGGAATTGAAGGAGGAAGTGGGAGATGCTAATGGCTTCACTAGGAAGTGTATTGCCTTTATATCATGCTGATTCACTGTTGAGGACCTGTTTCATGTTTCCGTGTTTGTTTTCTGAACAATGTTTTTCCTCCTTTTCAATAGGGACCACCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAAGCAGAAGAGTTTCTCGAGGCTCTTCAGCAATATGCTCAGTTGGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCCAGATAAATGTTCCAAAGTCTCTTCGGGACAGAGTGAAACATTTTTTGAATTTATTTGGCGTTGAAAGACCTGCCTTCAAGGACTGGAAATTTAAGGAGAAAACAGACCATTCATTTTAAGCAACCACGTCAAAATTGTTCAGAAGCAAGAAGAGGGCTGGAACGCCATGGAAAAAGCGCTCCCTTTCCTGAGATCTATGAAAAGTGGGCCCCATACAACTGCAACCACAGGAAAGCCTGACGTAGTTCCCAAACCTGAAAAACAAGTCAGTTGTGACAAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAACTTTTTCAAAATCACAAGGTTTGCAGGTAGGGGCTCATCCTTTTCTTTCTTGTGGTTATTCTACTAGATTTTTTTCTTGGTTGGGAAGGAATGCTACTGTGTTGAATAGTATGGAGAGGAGCTTCCATGAGATTTAGGATGTCTTTGCCTTTTAACCTCTTTTTGTCGTGGGAACACACTTTTAGATAAATGATAGCCTTCTTTTAGATGGGGAAACAATTATACTCTCTGTACCTTTATATATGCACGCTATTGGTCCTTTGGGCTGCTTTGTTGAGGGGGTTTTTTCCTTCTTATTTTTTTCTTTTTCTTTTTTAAGTTTGTCTTCGTATTTTGTAATAGCCTTAGAGTTATATCTATCATAGGACGTCAAAGTAATCTATTCCTGGTGGTATCATGGGGAAGATGAATCTTCTGGTAACAAAGCTGATGCGGTTGCCTTATTATTGTAGCTTTCAGTTGATATGTCAAGGTTTGCGTGACTTGGCTGTGTCTCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATACGGTGTTGATGCTCCTCCAGAAGAATTAAAAAAAATCATAAGCCAAGTCGCTACTGAGATTCATGGTCTCTATGTCTTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTGAGGTGACTTTTGTTCATGTTTAAGTGTCTTTATGTGAAAATCGTTTGCATTATTTTTCCATGCTTGGATCAGCGTTGAAAAATATTCGAAAATTCACTAGTGCATGCATGCCTGAGAATTTGGCTTCTTTTTTCTTTACCTTATGTGGCATGCTGCTCTATGCAGGAAAGTTGTCATTCAACTTTTACGTGGACGAGGACCTAAAGCAGTGCTTAAAAAGGCTGATGTTTTGGAAGCTTCAAAGCGTGAACTTGGTAGAGCTATCAATAGCAATGAATATAGCAAGGTTAGCCAATATGTTATTTGAGCTTACCCGCTTGAAAAAGGGAAATTTTTAGCAGATTATTATCCTTTGAAAATGGAAAATTTTCAAGCAGGAAGAGATTGGCTTGTGCGATGAAATTATAGATTTCCGTACATGTTATCAGCCTTCTTAACTGGTGTTACGATATCCGAGTCTTGTCTTACCCTGTTTGCATTCTCGCAGGTTATGAATGAAATTTGCGTGTCCCACGGTTCTTCTTGGACCTTGAAGAGTGGCGATGGAAATTCAAGATGA

mRNA sequence

ATGGACCTGGACGGCCTAGACGAACGGAGCCAGGTACCATCACGGACCTCCAGATTCGCACCCAAGTCCTCTAAATTCAAGCCGAAACCAAAGTCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTCAACCTCCAGTTTCTAAGCCGGAAGTTGTAGAGCCTGATGCTCAAATTGGGGAGAAGAAGGAAGACGGTGAAGAAGTTGAAGTAAAACCTAAAGTTGAATCCTCACTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGTCGGAAGTTGAAGAGGATACAATGGTGGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGTGAAATTGACGTTCTATTTACTCCTTCAGTTGATAGCAATTCGAAATTATATGTATTGCAATATCCTCTTAGACCACGTTGGAGGCCCTATGAATTTGAGGGGCGATGTGACGAGGTAAGAGTTAAACCAAGCACCGGAGAAGTGGAAATCGACCTGAATGTTGATATTGAATCCAATAACTATGACAGCAAAGCTGATGACACATTCCAAATGAAGAAGCAGACTTTGACATCTTCATGGCAACCGCCTCTAGCTACGTCCTATGCTGTTGGGCTGCTTATGGGCAATAAGCTACACCTGAATCCCGTACATGCAGTTGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGTCCGAAAAGGAAAAATAACATTAGAGCTGATTCAGATGTTAAGTCAGAAGAGCATGTGGATGTTAATTCTGCAGGTGCATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAACTTAAAACTAGAGATGAGGAGTGCTGGATTCCACTCAAGTACTATGGCTTAGAAAGTGATCTATCAACCAGACATCTGCAAAGCATGGTGTCACAAACAGTTTCCCCTATGCAATTTTCAATGAGTCCGCACGACTATATGGACTCCTTGTGTCCTGGTACGAGTACAAGCAGCAACAAGCCCAAAGGTCCATCTAAAAAGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTCACCGAGGGACCACCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAAGCAGAAGAGTTTCTCGAGGCTCTTCAGCAATATGCTCAGTTGGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTACCATTCATTTTAAGCAACCACGTCAAAATTGTTCAGAAGCAAGAAGAGGGCTGGAACGCCATGGAAAAAGCGCTCCCTTTCCTGAGATCTATGAAAAGTGGGCCCCATACAACTGCAACCACAGGAAAGCCTGACGTAGTTCCCAAACCTGAAAAACAAGTCAGTTGTGACAAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAACTTTTTCAAAATCACAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTGCGTGACTTGGCTGTGTCTCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATACGGTGTTGATGCTCCTCCAGAAGAATTAAAAAAAATCATAAGCCAAGTCGCTACTGAGATTCATGGTCTCTATGTCTTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTGAGGAAAGTTGTCATTCAACTTTTACGTGGACGAGGACCTAAAGCAGTGCTTAAAAAGGCTGATGTTTTGGAAGCTTCAAAGCGTGAACTTGGTAGAGCTATCAATAGCAATGAATATAGCAAGGTTATGAATGAAATTTGCGTGTCCCACGGTTCTTCTTGGACCTTGAAGAGTGGCGATGGAAATTCAAGATGA

Coding sequence (CDS)

ATGGACCTGGACGGCCTAGACGAACGGAGCCAGGTACCATCACGGACCTCCAGATTCGCACCCAAGTCCTCTAAATTCAAGCCGAAACCAAAGTCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTCAACCTCCAGTTTCTAAGCCGGAAGTTGTAGAGCCTGATGCTCAAATTGGGGAGAAGAAGGAAGACGGTGAAGAAGTTGAAGTAAAACCTAAAGTTGAATCCTCACTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGTCGGAAGTTGAAGAGGATACAATGGTGGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGTGAAATTGACGTTCTATTTACTCCTTCAGTTGATAGCAATTCGAAATTATATGTATTGCAATATCCTCTTAGACCACGTTGGAGGCCCTATGAATTTGAGGGGCGATGTGACGAGGTAAGAGTTAAACCAAGCACCGGAGAAGTGGAAATCGACCTGAATGTTGATATTGAATCCAATAACTATGACAGCAAAGCTGATGACACATTCCAAATGAAGAAGCAGACTTTGACATCTTCATGGCAACCGCCTCTAGCTACGTCCTATGCTGTTGGGCTGCTTATGGGCAATAAGCTACACCTGAATCCCGTACATGCAGTTGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGTCCGAAAAGGAAAAATAACATTAGAGCTGATTCAGATGTTAAGTCAGAAGAGCATGTGGATGTTAATTCTGCAGGTGCATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAACTTAAAACTAGAGATGAGGAGTGCTGGATTCCACTCAAGTACTATGGCTTAGAAAGTGATCTATCAACCAGACATCTGCAAAGCATGGTGTCACAAACAGTTTCCCCTATGCAATTTTCAATGAGTCCGCACGACTATATGGACTCCTTGTGTCCTGGTACGAGTACAAGCAGCAACAAGCCCAAAGGTCCATCTAAAAAGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTCACCGAGGGACCACCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAAGCAGAAGAGTTTCTCGAGGCTCTTCAGCAATATGCTCAGTTGGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTACCATTCATTTTAAGCAACCACGTCAAAATTGTTCAGAAGCAAGAAGAGGGCTGGAACGCCATGGAAAAAGCGCTCCCTTTCCTGAGATCTATGAAAAGTGGGCCCCATACAACTGCAACCACAGGAAAGCCTGACGTAGTTCCCAAACCTGAAAAACAAGTCAGTTGTGACAAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAACTTTTTCAAAATCACAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTGCGTGACTTGGCTGTGTCTCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATACGGTGTTGATGCTCCTCCAGAAGAATTAAAAAAAATCATAAGCCAAGTCGCTACTGAGATTCATGGTCTCTATGTCTTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTGAGGAAAGTTGTCATTCAACTTTTACGTGGACGAGGACCTAAAGCAGTGCTTAAAAAGGCTGATGTTTTGGAAGCTTCAAAGCGTGAACTTGGTAGAGCTATCAATAGCAATGAATATAGCAAGGTTATGAATGAAATTTGCGTGTCCCACGGTTCTTCTTGGACCTTGAAGAGTGGCGATGGAAATTCAAGATGA

Protein sequence

MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVEPDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIESNNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLPFILSNHVKIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGSSWTLKSGDGNSR

Homology

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BLAST of IVF0020129 vs. ExPASy Swiss-Prot
Match: Q9NVU0 (DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens OX=9606 GN=POLR3E PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.4e-24
Identity = 102/336 (30.36%), Postives = 151/336 (44.94%), Query Frame = 0


Query: 117 EDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNV 176
           +D VV+EIDV    S+    KLY+ QYP+RP    Y+        ++KP   +VE+++ +
Sbjct: 6   DDPVVQEIDVYLAKSL--AEKLYLFQYPVRPASMTYDDIPHL-SAKIKPKQQKVELEMAI 65

Query: 177 DIESNNY-------------DSKADDTFQ-----MKKQTLTSSWQPPLATSYAVGLLMGN 236
           D  + NY              + AD+T       M KQT  SS      + YA  L    
Sbjct: 66  DTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQG 125

Query: 237 KLHLNPVHAVVQLRPSFEHLNSGGPKRK-----NNIRADSDVKSEEHVDVNSAGASRKQK 296
           +LHL P+H ++QLRPSF +L+    K +     N     S  ++E+ V   +   SR + 
Sbjct: 126 ELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPES 185

Query: 297 KQTG----PSTEL--KTRDEECWIPLKYYGLESDLSTRHLQSMV---SQTVSPMQFSMSP 356
           +Q       S E   K   EE W+ L YYGL    S    Q ++   S  V   +   SP
Sbjct: 186 EQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSP 245

Query: 357 HDYMDSLC-PGTSTSSNKPKGPSK----KYLLSLSLEERIKKLLTEGPPVQRFSALKHYA 416
            +Y+  L  P      +KP  PS       L +L L ++IK L+     +   + +    
Sbjct: 246 SEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLG 305

[Close]

BLAST of IVF0020129 vs. ExPASy Swiss-Prot
Match: Q9CZT4 (DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus OX=10090 GN=Polr3e PE=1 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 8.4e-24
Identity = 101/336 (30.06%), Postives = 150/336 (44.64%), Query Frame = 0


Query: 117 EDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNV 176
           +D V++EIDV    S+    KLY+ QYP+RP    Y+        ++KP   +VE+++ +
Sbjct: 6   DDPVIQEIDVYLAKSL--AEKLYLFQYPVRPASMTYDDIPHL-SAKIKPKQQKVELEMAI 65

Query: 177 DIESNNY-------------DSKADDTFQ-----MKKQTLTSSWQPPLATSYAVGLLMGN 236
           D  + NY              + AD+T       M KQT  SS        YA  L    
Sbjct: 66  DTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYAAALYRQG 125

Query: 237 KLHLNPVHAVVQLRPSFEHLNSGGPKRK-----NNIRADSDVKSEEHVDVNSAGASRKQK 296
           +LHL P+H ++QLRPSF +L+    K +     N     S  ++EE V   +   SR + 
Sbjct: 126 ELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRPES 185

Query: 297 KQTG----PSTEL--KTRDEECWIPLKYYGLESDLSTRHLQSMV---SQTVSPMQFSMSP 356
           +Q       S E   K   EE W+ L YYG+    S    Q ++   S  V   +   SP
Sbjct: 186 EQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVENTELVKSP 245

Query: 357 HDYMDSLC-PGTSTSSNKPKGPSK----KYLLSLSLEERIKKLLTEGPPVQRFSALKHYA 416
            +Y+  L  P      +KP  PS       L +L L ++IK L+     +   + +    
Sbjct: 246 SEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFANLMSLLG 305

[Close]

BLAST of IVF0020129 vs. ExPASy Swiss-Prot
Match: O74883 (DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc37 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-10
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 0


Query: 102 EDTMVDDDPMEEDASE--DMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPY-EFEGRC 161
           ED  +++  +  D +E  D VVR   V F+P + +N  L + Q+PLRP+ R Y +  G  
Sbjct: 5   EDQAMEEAKLRNDETEEQDPVVRTYPVFFSPGLRNN--LLLNQFPLRPKNRTYSDANGEA 64

Query: 162 D-EVRVKPSTGEVEIDLNVDIESNNYDSKADDTFQMKK----QTLTSSWQPPLATSYAVG 221
             +VRVKP TG +E+D+ +       + KA      KK    QTL+   Q P  T+  VG
Sbjct: 65  PIDVRVKPKTGWMEVDVPIPTTKYYNEDKAMKYGNGKKPIQTQTLSGRLQKP-RTNLMVG 124

Query: 222 LLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRK 247
           L+   + H+ P+  + QLRPS +H+N    K K
Sbjct: 125 LIRDGQFHIVPLRGLTQLRPSMKHVNEYTQKLK 154

[Close]

BLAST of IVF0020129 vs. ExPASy TrEMBL
Match: A0A1S3BX09 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494365 PE=4 SV=1)

HSP 1 Score: 1251.9 bits (3238), Expect = 0.0e+00
Identity = 654/702 (93.16%), Postives = 655/702 (93.30%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120
           PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180
           VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240
           NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300
           GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300

Query: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360
           DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK
Sbjct: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360

Query: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420
           KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR
Sbjct: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420

Query: 421 DFVLFL----PFI------------------------------------------LSNHV 480
           DFVLFL    P +                                          LSNHV
Sbjct: 421 DFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHV 480

Query: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540
           KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL
Sbjct: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540

Query: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600
           NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY
Sbjct: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600

Query: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 657
           GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV
Sbjct: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 660

[Close]

BLAST of IVF0020129 vs. ExPASy TrEMBL
Match: A0A5A7TMP0 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00520 PE=4 SV=1)

HSP 1 Score: 1225.7 bits (3170), Expect = 0.0e+00
Identity = 645/702 (91.88%), Postives = 646/702 (92.02%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQP TKLEPQPPVSKPEVVE
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPTTKLEPQPPVSKPEVVE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120
           PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180
           VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240
           NNYDSKADDTFQMKKQTLTSSWQPPLATSYA        LHLNPVHAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYA--------LHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300
           GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300

Query: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360
           DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK
Sbjct: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360

Query: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420
           KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR
Sbjct: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420

Query: 421 DFVLFL----PFI------------------------------------------LSNHV 480
           DFVLFL    P +                                          LSNHV
Sbjct: 421 DFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHV 480

Query: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540
           KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL
Sbjct: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540

Query: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600
           NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY
Sbjct: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600

Query: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 657
           GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV
Sbjct: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 660

[Close]

BLAST of IVF0020129 vs. ExPASy TrEMBL
Match: A0A5D3CZA9 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005330 PE=4 SV=1)

HSP 1 Score: 1192.6 bits (3084), Expect = 0.0e+00
Identity = 631/702 (89.89%), Postives = 632/702 (90.03%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120
           PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180
           VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240
           NNYDSKADDTFQMKKQ                       LHLNPVHAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQ-----------------------LHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300
           GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300

Query: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360
           DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK
Sbjct: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360

Query: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420
           KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR
Sbjct: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420

Query: 421 DFVLFL----PFI------------------------------------------LSNHV 480
           DFVLFL    P +                                          LSNHV
Sbjct: 421 DFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHV 480

Query: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540
           KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL
Sbjct: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540

Query: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600
           NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY
Sbjct: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600

Query: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 657
           GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV
Sbjct: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 660

[Close]

BLAST of IVF0020129 vs. ExPASy TrEMBL
Match: A0A0A0KUN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1)

HSP 1 Score: 1177.9 bits (3046), Expect = 0.0e+00
Identity = 614/702 (87.46%), Postives = 630/702 (89.74%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLDGLDE SQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQP TKLEPQPP+SKPEVVE
Sbjct: 1   MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120
           PDA++ EKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEED MVDDDP+EEDASEDMV
Sbjct: 61  PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIEEDASEDMV 120

Query: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180
           VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVE+DLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIES 180

Query: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240
           NNYD+KAD TFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS
Sbjct: 181 NNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300
           GGPKRKNN+RADSDVKSEEHVDVNSAGASRKQKKQTGPSTE+KTRDEECWIPLKYYGLES
Sbjct: 241 GGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLES 300

Query: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360
           DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTS NKPKGPSKKYLLSLSLEERIK
Sbjct: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIK 360

Query: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420
           KLLTEGPPVQRFSALKHYAPDYE EEF+E LQQYAQLVQGLWVPKSLFLIPQDGSGRCAR
Sbjct: 361 KLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420

Query: 421 DFVLFL----------------------------------------------PFILSNHV 480
           DFVLFL                                                 LSNHV
Sbjct: 421 DFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHV 480

Query: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540
           +I +KQEE WN +EK   FLRS+KS  H  A TGKP VVPK EKQVS D+TTTKSSNAPL
Sbjct: 481 RIAEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPL 540

Query: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600
           NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY
Sbjct: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600

Query: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 657
           GVDAPP+ELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV
Sbjct: 601 GVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 660

[Close]

BLAST of IVF0020129 vs. ExPASy TrEMBL
Match: A0A6J1JCH8 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483153 PE=4 SV=1)

HSP 1 Score: 1067.0 bits (2758), Expect = 3.1e-308
Identity = 562/706 (79.60%), Postives = 601/706 (85.13%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLD LDE SQVPSRTSRFAPK+SKFKPKPK+EVVPKPEPQQPPTKLEP+ PV +PEV E
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKTEVVPKPEPQQPPTKLEPETPVPEPEVAE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMV--DDDPMEEDASED 120
           PDA IGEKKE+GEEVEVKPKVE+SLPNGV KMDVETK EVEE+TMV  DDDPMEEDASED
Sbjct: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVDDDDDPMEEDASED 120

Query: 121 MVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDI 180
           MVVREIDVLFTPS+D N+KLYVLQYPLRPRWRPYEFEGRCDEVRVKP+TGEVE+DLNVDI
Sbjct: 121 MVVREIDVLFTPSLDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDI 180

Query: 181 ESNNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHL 240
           ESNNYDSKAD   QMKKQTL SSWQPP+ATSYAVGLLMG+KLHLNPVH VVQLRPSFEHL
Sbjct: 181 ESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHL 240

Query: 241 NSGGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGL 300
           NSGGPKRK N+RAD +VKSEEH DVNSAG SRKQKKQTGPSTE KT DEECWIPLKYYGL
Sbjct: 241 NSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTGDEECWIPLKYYGL 300

Query: 301 ESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEER 360
           ESDLSTRHL+SMV+Q  SPMQFSMSPHDY+DSLCPG S+S NKPKGPSK++LLSLSLEER
Sbjct: 301 ESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEER 360

Query: 361 IKKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRC 420
           IKKLLTEGPP+QRFSALKHYAPDYE +EF+EALQQYAQ VQGLWV KS FL+PQDGSGRC
Sbjct: 361 IKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRC 420

Query: 421 ARDFVLFL----------------------------------------------PFILSN 480
           ARDFVL L                                                 L+N
Sbjct: 421 ARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNN 480

Query: 481 HVKIVQKQEEGWNAMEKAL--PFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSS 540
           +V IVQKQE+ W ++E+ +   F  S+K+  H  A   KP++VPKPEKQV  DK +TKSS
Sbjct: 481 YVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSS 540

Query: 541 NAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAV 600
           NA LNRK  MSDETREALPKALQKLFQ HKVCSFQLICQGLRDLAVSQSTLPKADARMAV
Sbjct: 541 NAALNRKSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAV 600

Query: 601 AAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLK 657
           AAAYGVDAPP+ELK+II QVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLK
Sbjct: 601 AAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLK 660

[Close]

BLAST of IVF0020129 vs. NCBI nr
Match: XP_008453719.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo])

HSP 1 Score: 1253 bits (3243), Expect = 0.0
Identity = 654/702 (93.16%), Postives = 655/702 (93.30%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120
           PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180
           VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240
           NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300
           GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300

Query: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360
           DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK
Sbjct: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360

Query: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420
           KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR
Sbjct: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420

Query: 421 DFVLFL----PFI------------------------------------------LSNHV 480
           DFVLFL    P +                                          LSNHV
Sbjct: 421 DFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHV 480

Query: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540
           KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL
Sbjct: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540

Query: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600
           NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY
Sbjct: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600

Query: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 656
           GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV
Sbjct: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 660

[Close]

BLAST of IVF0020129 vs. NCBI nr
Match: KAA0044763.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 1228 bits (3176), Expect = 0.0
Identity = 645/702 (91.88%), Postives = 646/702 (92.02%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQP TKLEPQPPVSKPEVVE
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPTTKLEPQPPVSKPEVVE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120
           PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180
           VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240
           NNYDSKADDTFQMKKQTLTSSWQPPLATSYA        LHLNPVHAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYA--------LHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300
           GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300

Query: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360
           DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK
Sbjct: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360

Query: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420
           KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR
Sbjct: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420

Query: 421 DFVLFL----PFI------------------------------------------LSNHV 480
           DFVLFL    P +                                          LSNHV
Sbjct: 421 DFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHV 480

Query: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540
           KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL
Sbjct: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540

Query: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600
           NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY
Sbjct: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600

Query: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 656
           GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV
Sbjct: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 660

[Close]

BLAST of IVF0020129 vs. NCBI nr
Match: TYK16700.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 1194 bits (3089), Expect = 0.0
Identity = 631/702 (89.89%), Postives = 632/702 (90.03%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120
           PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180
           VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240
           NNYDSKADDTFQMKKQ                       LHLNPVHAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQ-----------------------LHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300
           GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300

Query: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360
           DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK
Sbjct: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360

Query: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420
           KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR
Sbjct: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420

Query: 421 DFVLFL----PFI------------------------------------------LSNHV 480
           DFVLFL    P +                                          LSNHV
Sbjct: 421 DFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHV 480

Query: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540
           KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL
Sbjct: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540

Query: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600
           NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY
Sbjct: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600

Query: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 656
           GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV
Sbjct: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 660

[Close]

BLAST of IVF0020129 vs. NCBI nr
Match: XP_004149158.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis sativus] >KGN53263.1 hypothetical protein Csa_015177 [Cucumis sativus])

HSP 1 Score: 1179 bits (3051), Expect = 0.0
Identity = 615/702 (87.61%), Postives = 632/702 (90.03%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLDGLDE SQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQP TKLEPQPP+SKPEVVE
Sbjct: 1   MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120
           PDA++ EKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEED MVDDDP+EEDASEDMV
Sbjct: 61  PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIEEDASEDMV 120

Query: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180
           VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVE+DLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIES 180

Query: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240
           NNYD+KAD TFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS
Sbjct: 181 NNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300
           GGPKRKNN+RADSDVKSEEHVDVNSAGASRKQKKQTGPSTE+KTRDEECWIPLKYYGLES
Sbjct: 241 GGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLES 300

Query: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360
           DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTS NKPKGPSKKYLLSLSLEERIK
Sbjct: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIK 360

Query: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420
           KLLTEGPPVQRFSALKHYAPDYE EEF+E LQQYAQLVQGLWVPKSLFLIPQDGSGRCAR
Sbjct: 361 KLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420

Query: 421 DFVLFL----PFI------------------------------------------LSNHV 480
           DFVLFL    P +                                          LSNHV
Sbjct: 421 DFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHV 480

Query: 481 KIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPL 540
           +I +KQEE WN +EK   FLRS+KS  H  A TGKP VVPK EKQVS D+TTTKSSNAPL
Sbjct: 481 RIAEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPL 540

Query: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600
           NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY
Sbjct: 541 NRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAY 600

Query: 601 GVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 656
           GVDAPP+ELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV
Sbjct: 601 GVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADV 660

[Close]

BLAST of IVF0020129 vs. NCBI nr
Match: XP_038876785.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida])

HSP 1 Score: 1107 bits (2864), Expect = 0.0
Identity = 584/704 (82.95%), Postives = 612/704 (86.93%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60
           MDLD LDE+SQV SRTSRFAPK+SKFKPKPKSEVVPKPEPQQPPTK EPQPPVSKPEV E
Sbjct: 1   MDLDDLDEQSQVRSRTSRFAPKASKFKPKPKSEVVPKPEPQQPPTKSEPQPPVSKPEVTE 60

Query: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120
           PDA+IGEKKE+GEEVE+KPKVE SLPNGVAKMDVETKSEVEE+TMVDDDPMEEDASEDMV
Sbjct: 61  PDARIGEKKEEGEEVEIKPKVEPSLPNGVAKMDVETKSEVEEETMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180
           VREIDVLFTPS D N+KLYVLQYPLRPRWRPYEFEGRCDEVRVKPS+GEVE+DLNVDIES
Sbjct: 121 VREIDVLFTPSPDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSSGEVEVDLNVDIES 180

Query: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240
           NNYDSKAD + QMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADGSLQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300
           GGPKRKN++RAD DVKSEEHVDVNSAGASRKQKKQTGPSTELKT DEECWIPLKYYG ES
Sbjct: 241 GGPKRKNSVRADPDVKSEEHVDVNSAGASRKQKKQTGPSTELKTGDEECWIPLKYYGQES 300

Query: 301 DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360
           DLSTRHL+SMV+QT +PMQFSMSP DYMDSLCPGTSTSSNKPKGPSK+YLLSLSLEERIK
Sbjct: 301 DLSTRHLRSMVAQTAAPMQFSMSPLDYMDSLCPGTSTSSNKPKGPSKRYLLSLSLEERIK 360

Query: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCAR 420
           KLLTEGPPVQRFSALKHYAPDYEAEEF+EALQQYAQ VQGLWVPKS  L+PQD SGRCAR
Sbjct: 361 KLLTEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQSVQGLWVPKSSVLLPQDASGRCAR 420

Query: 421 DFVLFL----PFI------------------------------------------LSNHV 480
           DFVL L    P +                                          LSN+V
Sbjct: 421 DFVLNLFSKNPVVSSSQINVPKSLREKVKHFLNLFGVERPAFKDWKFKEKTDHLFLSNYV 480

Query: 481 KIVQKQEEGWNAMEKALP--FLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNA 540
            +VQKQE+ W ++E+ +   F  S KS  H  A TGKPD+V KPEKQVS DK T KSSNA
Sbjct: 481 DLVQKQEKIWRSVEEGISKIFHGSGKSVSHANAATGKPDMVSKPEKQVSNDKATIKSSNA 540

Query: 541 PLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAA 600
            LNRK  MSDETREALPKALQKLF NHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAA
Sbjct: 541 ALNRKSTMSDETREALPKALQKLFHNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAA 600

Query: 601 AYGVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKA 656
           AYGVDAPP+ELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKA
Sbjct: 601 AYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKA 660

[Close]

BLAST of IVF0020129 vs. TAIR 10
Match: AT5G49530.1 (SIN-like family protein )

HSP 1 Score: 456.4 bits (1173), Expect = 3.7e-128
Identity = 299/717 (41.70%), Postives = 413/717 (57.60%), Query Frame = 0


Query: 1   MDLDGLDERSQVPSRTSRFAP-KSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVV 60
           MD D  D+  +V ++T RFAP ++ K KPKPK    P+P   +P   ++P PP S+ E  
Sbjct: 1   MDFDDDDKPKEV-TKTRRFAPGRAGKSKPKPK----PEPTADKP---VQP-PPQSQTE-- 60

Query: 61  EPDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTM------------VD 120
                + + + D +   V  KVE+ + NG  KM++++K + E + M            + 
Sbjct: 61  ----SVSKTEHDVDAKFVGTKVETEVCNGSVKMEIDSKVDKEPEIMETELMEEDQQLPLQ 120

Query: 121 DDPMEEDASEDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPST 180
           ++  EE+  +D+VVREIDV F PS+D+N++LYVLQYPLRP WRPYE + RC+EVRV PST
Sbjct: 121 EEKEEEEEEDDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPST 180

Query: 181 GEVEIDLNVDIESNNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHA 240
            +VEIDL++D+ S NYDS       M KQTL ++W+ P    YAVG+L G+KLHLNPVHA
Sbjct: 181 SQVEIDLSMDVHSKNYDSNFG--LNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHA 240

Query: 241 VVQLRPSFEHLNSGGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQT-GPSTELKTRD 300
           V QLRPS + L+S           D   K EE  +  S G S+KQ K     ST+ K  +
Sbjct: 241 VAQLRPSMQSLSS-----------DKKKKQEESTE-ESVGTSKKQNKGVQQASTDQKPIN 300

Query: 301 EECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPS 360
           EE W+ LKY+GL+S+  +R+L  M++   S + F+MSP  Y++ LC G S+ +++ K   
Sbjct: 301 EETWVSLKYHGLQSEYCSRYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETL 360

Query: 361 KKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKS 420
           K+ LLSL L+ER++KLL EG P+ R+S LKHYAP++  E+FL ALQ+Y +LVQGLW PK+
Sbjct: 361 KRVLLSLPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKT 420

Query: 421 LFLIPQDGSGRCARDFVLFL----------------------------PFILSNHV---- 480
             L+  DG    ARD+VL L                             F    HV    
Sbjct: 421 R-LLKLDGPVEAARDYVLSLFSQNTTIKYSEVEATGDKMKPLMERMLTEFAKERHVLKDW 480

Query: 481 ---------------KIVQKQEEGWNAMEKALPFLRSMKSGP-------HTTATTGKPDV 540
                          +IV++Q+  W    + L    + + G        +   T+    V
Sbjct: 481 KFKEPTDVSFIKSYPEIVKEQDIFWTDKRENLKSRITAQGGKSRADKRRNVVGTSSSVTV 540

Query: 541 VPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLR 600
            P+    +S DK  +  +         M +E ++ALPKAL+K+FQ HKVC ++ ICQGLR
Sbjct: 541 KPEVPTTLS-DKGGSSKNTIHRVVTQEMPEELKKALPKALKKVFQTHKVCRYETICQGLR 600

Query: 601 DLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPL 650
           DLAVS S  PKAD+ MAV  A  VDA   EL+ +I+ VAT IHG YV  SSP+HPEYD L
Sbjct: 601 DLAVSTSNNPKADSGMAVNVALAVDAYQGELEDVINGVATNIHGSYVSISSPDHPEYDSL 660

The following BLAST results are available for this feature:

BLAST of IVF0020129 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NVU0	8.4e-24	30.36	DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens OX=9606 GN=POLR3E P...	[more]
Q9CZT4	8.4e-24	30.06	DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus OX=10090 GN=Polr3e ...	[more]
O74883	1.4e-10	35.29	DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of IVF0020129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BX09	0.0e+00	93.16	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A5A7TMP0	0.0e+00	91.88	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A5D3CZA9	0.0e+00	89.89	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A0A0KUN5	0.0e+00	87.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1	[more]
A0A6J1JCH8	3.1e-308	79.60	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3...	[more]

BLAST of IVF0020129 vs. NCBI nr


Match Name	Identity	Description
XP_008453719.1	93.16	PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo...	[more]
KAA0044763.1	91.88	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw...	[more]
TYK16700.1	89.89	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw...	[more]
XP_004149158.1	87.61	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis sativus] >KGN53...	[more]
XP_038876785.1	82.95	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida]	[more]

BLAST of IVF0020129 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49530.1	3.7e-128	41.70	SIN-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PFAM	PF04801	Sin_N	coord: 117..426 e-value: 1.3E-74 score: 252.0
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PANTHER	PTHR12069	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	coord: 111..435
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 483..497
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 457..503
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020129.2	IVF0020129.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity