IVF0020117 (gene) Melon (IVF77) v1

Overview
NameIVF0020117
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionExosome complex component RRP42-like
Locationchr12: 276562 .. 282156 (-)
RNA-Seq ExpressionIVF0020117
SyntenyIVF0020117
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTTATTTCTTAAAATTATGGTTCTTCAAGACCTCAAGTTCTTCATTATCTTTCTGATACTAGATGATATATATATATATATTTCACATGACAAAGTGAATGAACCACCCTAGGAAAGTTCAATGACATAACTAGGCCAATTTCATTTGCTTTATGGTTTATTTTCAAGTTAAGACAAAACATATAATCTCAAATTCTTTTTAGAGAAATTCTATTATCTTTGAAATATCTTTGAGAGTTTTTACTCAAATCATCAAATTGGACAAATAGGGTTATTTTTATATCCTCTTATCAACAAAAATGTAATAAGAGAGGATGATATTCTTCTGCAATAACTCTCTTATTATTGAATCATATGATTTTATAACTTTTAATCCTTCAGGGATAGAATTATTAATAAATTTATATAAATGTATAACAACAACGTCTATAAGGTGTATGTTAAGCTTAGCATACACACTAAGGTATGTTAGATATCTCATGGTATTGTATCCACCATAGGAGAATATGTATCTCTCATATAACCAATACCAGTTCTCGATAATTATTGTGGAACTCGTCTCACTTTCTATTTGTTTTTCATACAAACACTTTACTTGTATTCATCATGTTCGACATTCTCTAAATGTCTAACTAGTTCTCATGATTTGAAACATATAAGTTTATTTTGATTGGATTGTTTCTTTTCACATAAGTCAATCCTTTCTGTGTAGTCGCGACATTGTTCAATATGTTTAAGTACATATTACTTATTTTCATAAATAATATCGTAAGCAACATTGTATGCAAAAATGTTGTCAAGTTATTTAAGTATAGTTCCATTTCTTGTCATAACATATGATTTTATCGTGATCTCTTTACTATCCATATTTACTTTAAGATTCTTATGAGTGCTCATATTCAGAATTTTTTCTAGAATATCCATATTCTTAACAAGTCATTAATTTACTATTTCTTCTTCAAGAATCTTTCTCTTTTGGAACTCACATTTGCCTATTACGTTTCAAGCGTGTAGTATTGACAACTTGTTGCACTAGGATATCATTCTTAGATGGTATCTTTGTAACTACTATAACTCGGTCACTTTCTTACAATTATAAATGTTCTGTAAATGCATCTACATTTGATTTGATATCATTTTATTATAAATGAGATATCTTTTGAACTTCTAGTTCAAAGTAATTTGTATAATGATCAAAATGAGACGATACTTACGCATTTCATTCAATTTATTTTACCAACATTTTCTTAATTTCTCCCCCTAACGTTGGAAAAAATGTCTCATTAATGAGAACTAACAAATTGCATAATAAATATATCATCCATCTAGGGTTTAATTGTTTCATCATCTTAAACATGATTTCATACAAATTTAGAAGCTTTTCTATTCAAACATATGCTACAATATGGTCGTTCACTTATCTCAATCAATTATCAAATGTTTGGGATGGAAACTCACTAACATTCTTAAATCAAAATAATAAGTATATCTATGGCCAACAATATGATGCGCCAACAAGAATTAATAAACCATGAATCTCTTCCCAAAAGCATGAGAGTTTCAATTTCAAATTTCGCTAATGAGAGTTTGATAATTAACCTCTTGAGAACAAGAGACCCCTTGACAATTTATTACATGAAAGAATTTTCTAGTTCTTCAATGGATGTCAATGTATATTTTCAATCATACATTAATTTCATTATTGACCCAAAATAACTCTCATGTCAAATAAAATTATGTATGGATCAATGAACTTCAGGTTCGTTGTTACATATATATCAATTACGCGAATGTGTGTGTAATATAATTGAGAAGTAAAAATAGACAAATTTTTTATATGCACTACCCGCATAAGATTATATATAATATATGCATATCATATGTTATTCTTATAGTCAATCTCTCTAGATATGATATTGATTACAACATATACCTTTCCAATTTACTAAACTTCTCTTTGATAGATTTACAAAGATAGTAAGGTATATCAAGACTATCAAAACTATCAAGACTATCAAATCTTGAAGGTGTATTGTTTAGTTTTAAGTATAATATGCATAGATGTACTATATGCAACGCATAAATATCAAGAGATTATTTTTATTCTCTCCAAGAGATTAAAAGAAAATCCAAATATTTCATCCATATATAAAAGGGCAAAAAGAATAATCATGTCTTCAGGAGATTGTATAGATTATCCGAATAATATCATATTTATAAGGTTAAAATAAAAACTATAATCTCTTCGAGAGATACAAATAATTTATCAAAGTTTGCTTTCATACATCGCTCTCCTTTTCATCGTTAAGGATTTTCATTTTTTCAAATAGACTCTTAATGTACGACAAGTACACGATTATTGTATCTTTTCCAAACATATTTGGAAAATAAAATTCTCATATAAATATGTATGGTTCTAATCAAATAAACATTTCTTTTCTATTAACATAATTTTAATCTTAAAAAATATTGTAACGTTCACTTCAGGGAATGCTATTAAATTATTTGATCGAAATTTACCACATATATGTATATATATATATATAATAGAAACATATGCTCAATATATAATATAATGTTTCCAACTTTCTCTCTCAAATTGTTATTGTAAGAGAAAAGGTGTTTTGATATGTGCAACTATTGGTGCACGGCAAAAACAATGAGCACTAACATTATATAATCTTATTCTCATATTTGAAAAACATTGAGAATTTATTTGCATATTTGACAAACAACATTAACATTATATAATCTTAACGTATATATATATATATATATAAGATAAATATTACCACAATATTTGTCAAGTAAAATGAAATCCAATTAGGAAAACAAATATTCTAATTTAAACTTTCATATAAATTAATTAGAAAAACATCTCAATCAAATATTTCAAATATAAGAATTATATTTAAAAATAAGGCATGGTTACCACCTTAATCTAAATAACATTAGAATATTTATAACATACATCTAAAATGATATAGCATATTTGACAAATCTATAAGATTTAACCAAAAAATTAAAGTCAAGAAATACTTGATTATTCAATATCTTTTCTATTTTGGATCACTCAAAACAAGGTTATTTAAGTTTCTTAAACATATATTTTATTCCTTAACAAATATGAAAATTATCTATAGTCTAAAATAGTAACCACACACACATATATACATATACTTCAAATAGAATTTAAGTTTGAATATATACTTATTCAACACATATGTCATGATATACATATCTCATGTACCCAAAATTTAACATCACAAAGTTTTATCATGAAATGTCATACATAACTTGAAACCAAATTAAGGATCGTTTTTCATTAAATCTACGCAATCGTAAATTTTTTCTATTTAGTCATTCTGCAAAGTATGAGGATAAAGTACGTGCAACTTTTGTCGAACATATGAATAAAGTTTTTCAATTCGATCAAATCAAATTGTAAAACTAATAACAAATGTACCTTAGCAAACAATTTCACAATTAACATATATTGCATACTTAGTTATCAAGAAATATGAACGATGATGATGAGAAGATCAATGATGAATACACAAAATACATACATATACGACAAAATCATCAAAATCAAAATACAAACCATATTTGGACGAAGTTCTAAATATCTCAAAAATTATGGAGAAAATTATAGCAAGTCTTTAACAAGAATCAAAATCAATTTCTACAAAACTTTCAAAGTAGTAGAGACTCGTGCTGATAACGTGTTATGAAATAAAGAACAATGAAACAACCAAAGAGAAGAATAGAGGAGAGAGGAAGAAAAGAAAACAATTGAACTCAATTGTGGTGTGTATACAAATGATCTCTACAACCTCTATATATAGGGTTGTGAGAATAATAGTTACAAAACCAAACATAAATAGGGGACAAGAAAGTTATGGATATTGATGGGAGGTTATTGGATGAATTTGTAACCTAAGGAGGTTATGGACATCAAATAATATTTGATTTTAATGTTGAGTATTCATAACATAAAAAGAACTCGTTGAACAGAATAGGACCAAACTAACTTCCTACTTCTTGAAAAGCAATATTATGATGAAACAGGTACATCCAAAACATGAAATTTTGATTTGATTAAGTTCATTTCAAGCCGTAAGTAGAGAACAAATCATTGAATAGAACCCCTAAGAAATCATGTTTTTATCATTTGCTTCAAGTTTTTGATATTTTGGTGATCTTTTTCCGATGGAATCATTGCATCGCTGTTTTTTATTTTTCTACTTTAATGTCTATAGTGATTGAGGAAAGTCAGGCTTTAAGCCTATATTTGTCTCATTCAATTTTGAAAATCTTTGCTAGGCCATTTGCATATCAGAAGAGTAAAACAAGAAATTTCCTATTGAGAGTTAGCTAGTGGGATGTATTGATATGCATTGAGGGAAACGACTAACGAATGTGTTATCATATGGGGAATTTTTTTGCGGTGGTTTCTGAATTTTCATCTGGTAGAGAGAGGTTACCAACCCCATCATGAAAAGGTTGGTTAGTTTGGTGTTGCTGTCTCTTATATTCGTTTATTATTAAAAATATGTCTTTAAAAAACTAGATAATTTTTATGCCAACAGAAAATTCAAATAAATGAATTGATGCATTTATATGCTTAAAAGACTTGGTTTGATATATTTCAGACTCAATTTATTATAATTGTCATATATGTGTCTTTTTAGTCCATTCTATCAAGCAAGTGTTCTATGTATGTGTAAGGTATTTCTTACTAATATTAGTATTAATATGAAAGAGTTGCCTGAAGGTTACAATTCTCTCTGAGAAAAGCTTAACCTCCCCTTTCTCAAGTCTACTTGCTAATTTCCAAAACCCTATTCTAACTATCGTCATCTTATTCAATACATAGATTGACCACTCCTCACTTCCTCACTTCCATAGAGCCTAGTAGTTCCCATCATAACTAACTTTTACTCGTACTACTCTATTTACCCCTTCTCGAATATTTCAGTAGAATTGAAACCCTAATAATATGTTTAGCATATATATTATACTAACAAGTGTCCATGTCTGTGTTATGACAAGGACATGCTCGTCAAAGTAAATTGTTCATGCTTATTAGGGAGAGGTTACCATCCTGCTCGTGGAAAAGGCTGGTAGTCTAGTGTTGATGTATATGTTGTCTTTCTTAATTTTTTTTTTCTTTCTATTTTCTTGAAGAAATTTAGGAATTAATTTAAAACTGATTGTGATACTTTACTTGATTGTGATACTTTACTTACTCTTTTAATACTTATGAAAGAAACTAATAAAACTTCTAATTGTTCTTCTCAAGGCTACTTTGAACAATACATGCATCCCAAAAGTCCATATTGCTGCAGAAGCATCAGGCAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGAGACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCATTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCAACAGGCATGATCGGTTGACTAAACGTGGGGGTGTCGGGGTTGATCCAAGCATAATCCTCGATTGA

mRNA sequence

ATGCACTTATTTCTTAAAATTATGGTTCTTCAAGACCTCAAGTTCTTCATTATCTTTCTGATACTAGATGATATATATATATATATTTCACATGACAAAAGAAAAGGTGTTTTGATATGTGCAACTATTGAGGAAGAAAAGAAAACAATTGAACTCAATTGTGGTAAAGTTATGGATATTGATGGGAGGTTATTGGATGAATTTGCTACTTTGAACAATACATGCATCCCAAAAGTCCATATTGCTGCAGAAGCATCAGGCAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGAGACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCATTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCAACAGGCATGATCGGTTGACTAAACGTGGGGGTGTCGGGGTTGATCCAAGCATAATCCTCGATTGA

Coding sequence (CDS)

ATGCACTTATTTCTTAAAATTATGGTTCTTCAAGACCTCAAGTTCTTCATTATCTTTCTGATACTAGATGATATATATATATATATTTCACATGACAAAAGAAAAGGTGTTTTGATATGTGCAACTATTGAGGAAGAAAAGAAAACAATTGAACTCAATTGTGGTAAAGTTATGGATATTGATGGGAGGTTATTGGATGAATTTGCTACTTTGAACAATACATGCATCCCAAAAGTCCATATTGCTGCAGAAGCATCAGGCAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGAGACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCATTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCAACAGGCATGATCGGTTGACTAAACGTGGGGGTGTCGGGGTTGATCCAAGCATAATCCTCGATTGA

Protein sequence

MHLFLKIMVLQDLKFFIIFLILDDIYIYISHDKRKGVLICATIEEEKKTIELNCGKVMDIDGRLLDEFATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDRLTKRGGVGVDPSIILD
Homology
[Close]
BLAST of IVF0020117 vs. ExPASy Swiss-Prot
Match: Q54VM4 (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 GN=exosc7 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 0 

Query: 57  VMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSD--EEFLQFETSGVP 116
           V+D DG L D       + L NT IP+V   A     E+   +VSD  E+ L      VP
Sbjct: 186 VLDSDGNLFDALSIACRSALQNTRIPRV--KAIQGEYEEITFEVSDDPEDTLSLSIDNVP 245

Query: 117 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDRL--TKRGGV-GVDPSII 161
             VTLTK+G  ++ID TL+EE  M++ +++ +N    +   ++GG+ G+DP+ I
Sbjct: 246 ICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPTTI 297

[Close]
BLAST of IVF0020117 vs. ExPASy Swiss-Prot
Match: Q15024 (Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-07
Identity = 33/114 (28.95%), Postives = 59/114 (51.75%), Query Frame = 0 

Query: 57  VMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAI 116
           +++  G L D       A L NT IP+V +  +  G++  E+     + ++     VP I
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCI 200

Query: 117 VTLTKVGKHYIIDATLEEESQMSSAVSISINRHDRLT---KRGGVGVDPSIILD 163
           VTL K+G  +++DATL+EE+   +++ +S+     +T   K G   +DP  I +
Sbjct: 201 VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFE 254

[Close]
BLAST of IVF0020117 vs. ExPASy Swiss-Prot
Match: Q9D0M0 (Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 33/114 (28.95%), Postives = 58/114 (50.88%), Query Frame = 0 

Query: 57  VMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAI 116
           +++  G L D       A L NT IP+V +  +  G +  E+     + ++     VP I
Sbjct: 141 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSVENVPCI 200

Query: 117 VTLTKVGKHYIIDATLEEESQMSSAVSISINRHDRLT---KRGGVGVDPSIILD 163
           VTL K+G  +++DATL+EE+   +++ +S+     +T   K G   +DP  I +
Sbjct: 201 VTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFE 254

[Close]
BLAST of IVF0020117 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.1e-04
Identity = 30/113 (26.55%), Postives = 57/113 (50.44%), Query Frame = 0 

Query: 57  VMDIDGRLLD-----EFATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAI 116
           V+D DG L D       + L+ T +PK  +  +       EV+V +E+      +  P  
Sbjct: 141 VLDHDGNLFDASMIGSVSALSITEVPKAEVVDD-------EVEVMEEDTEPLAINDFPIS 200

Query: 117 VTLTKVGKHYIIDATLEEESQMSSAVSISINRHDRL--TKRGGVGVDPSIILD 163
           VT+ KVG++ ++D  LEEE  M + +++++     +   ++G +G  P  +L+
Sbjct: 201 VTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQKGELGDFPEHLLE 246

[Close]
BLAST of IVF0020117 vs. ExPASy TrEMBL
Match: A0A5D3BBL2 (Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00070 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 9.3e-44
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0 

Query: 65  LDEFATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAIVTLTKVGKHYIID 124
           +   ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAIVTLTKVGKHYIID
Sbjct: 1   MKRLATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAIVTLTKVGKHYIID 60

Query: 125 ATLEEESQMSSAVSISINRHDRLTKRGGVGVDPSIILD 163
           ATLEEESQMSSAVSISINRHDRLTKRGGVGVDPSIILD
Sbjct: 61  ATLEEESQMSSAVSISINRHDRLTKRGGVGVDPSIILD 98

[Close]
BLAST of IVF0020117 vs. ExPASy TrEMBL
Match: A0A1S3B3T5 (exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 94/116 (81.03%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  +G LLD       A L+NT IPKVHIAAEASGNEQPEVDVSDEEF+QFETSGVP
Sbjct: 142 GLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGNEQPEVDVSDEEFIQFETSGVP 201

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 163
           AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRH     LTKRGGVGVDPSIILD
Sbjct: 202 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHICGLTKRGGVGVDPSIILD 257

[Close]
BLAST of IVF0020117 vs. ExPASy TrEMBL
Match: A0A5A7SRK6 (Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001860 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 94/116 (81.03%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  +G LLD       A L+NT IPKVHIAAEASGNEQPEVDVSDEEF+QFETSGVP
Sbjct: 142 GLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGNEQPEVDVSDEEFIQFETSGVP 201

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 163
           AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRH     LTKRGGVGVDPSIILD
Sbjct: 202 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHICGLTKRGGVGVDPSIILD 257

[Close]
BLAST of IVF0020117 vs. ExPASy TrEMBL
Match: A0A0A0LU91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.9e-37
Identity = 89/116 (76.72%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  +G LLD       A L+NT IPKVH+AAEA  NEQPEVDVSDEEFLQF+TSGVP
Sbjct: 142 GLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGVP 201

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 163
           AIVTLTKVGKHYI+DATLEEESQMSSAVSISI+RH     LTKRGGVGVDPSIILD
Sbjct: 202 AIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILD 257

[Close]
BLAST of IVF0020117 vs. ExPASy TrEMBL
Match: A0A6J1JIH0 (exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 7.1e-36
Identity = 84/116 (72.41%), Postives = 95/116 (81.90%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  DG LLD       A L+NT IPKV+++AEAS NEQPEVDVSDEEFLQF+TSGVP
Sbjct: 142 GLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANEQPEVDVSDEEFLQFDTSGVP 201

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 163
            IVTLTKVG+HYI+DATLEEESQMSSA+SIS+NRH     LTKRGG GVDPS+ILD
Sbjct: 202 VIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVCGLTKRGGAGVDPSVILD 257

[Close]
BLAST of IVF0020117 vs. NCBI nr
Match: KAA0059967.1 (exosome complex component RRP42-like [Cucumis melo var. makuwa] >TYJ97220.1 exosome complex component RRP42-like [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (472), Expect = 4.95e-58
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0 

Query: 65  LDEFATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAIVTLTKVGKHYIID 124
           +   ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAIVTLTKVGKHYIID
Sbjct: 1   MKRLATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVPAIVTLTKVGKHYIID 60

Query: 125 ATLEEESQMSSAVSISINRHDRLTKRGGVGVDPSIILD 162
           ATLEEESQMSSAVSISINRHDRLTKRGGVGVDPSIILD
Sbjct: 61  ATLEEESQMSSAVSISINRHDRLTKRGGVGVDPSIILD 98

[Close]
BLAST of IVF0020117 vs. NCBI nr
Match: XP_008441268.1 (PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441270.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899428.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899429.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899430.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899431.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899432.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >KAA0031919.1 exosome complex component RRP42-like [Cucumis melo var. makuwa] >TYK06691.1 exosome complex component RRP42-like [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (435), Expect = 6.41e-50
Identity = 94/116 (81.03%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  +G LLD       A L+NT IPKVHIAAEASGNEQPEVDVSDEEF+QFETSGVP
Sbjct: 142 GLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGNEQPEVDVSDEEFIQFETSGVP 201

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 162
           AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRH     LTKRGGVGVDPSIILD
Sbjct: 202 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHICGLTKRGGVGVDPSIILD 257

[Close]
BLAST of IVF0020117 vs. NCBI nr
Match: XP_038891988.1 (exosome complex component RRP42 isoform X2 [Benincasa hispida])

HSP 1 Score: 162 bits (410), Expect = 9.26e-47
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  +G LLD       A L++T IPKVH+AAE+S NEQPEVDVSDEEFLQF+TSGVP
Sbjct: 92  GLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQFDTSGVP 151

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 162
           AIVTLTKVGKHYIIDATLEEESQMSSAVSIS+NRH     LTKRGG G+DPSIILD
Sbjct: 152 AIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSIILD 207

[Close]
BLAST of IVF0020117 vs. NCBI nr
Match: XP_004151651.2 (exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome complex component RRP42 [Cucumis sativus] >XP_011656329.1 exosome complex component RRP42 [Cucumis sativus] >XP_031737840.1 exosome complex component RRP42 [Cucumis sativus] >KGN63566.1 hypothetical protein Csa_013213 [Cucumis sativus])

HSP 1 Score: 163 bits (413), Expect = 1.31e-46
Identity = 89/116 (76.72%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  +G LLD       A L+NT IPKVH+AAEA  NEQPEVDVSDEEFLQF+TSGVP
Sbjct: 142 GLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGVP 201

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 162
           AIVTLTKVGKHYI+DATLEEESQMSSAVSISI+RH     LTKRGGVGVDPSIILD
Sbjct: 202 AIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILD 257

[Close]
BLAST of IVF0020117 vs. NCBI nr
Match: XP_038891978.1 (exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891979.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891980.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891981.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891982.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891983.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891984.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891985.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891986.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891987.1 exosome complex component RRP42 isoform X1 [Benincasa hispida])

HSP 1 Score: 162 bits (410), Expect = 3.70e-46
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  +G LLD       A L++T IPKVH+AAE+S NEQPEVDVSDEEFLQF+TSGVP
Sbjct: 142 GLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQFDTSGVP 201

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 162
           AIVTLTKVGKHYIIDATLEEESQMSSAVSIS+NRH     LTKRGG G+DPSIILD
Sbjct: 202 AIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSIILD 257

[Close]
BLAST of IVF0020117 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-34
Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  DG LLD       A L NT IPKV+++AE + +EQPE+D+SDEE+LQF+TS VP
Sbjct: 141 GLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSVP 200

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 163
            IVTLTKVG HYI+DAT EEESQMSSAVSIS+NR      LTKR G G+DPS+ILD
Sbjct: 201 VIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSGLDPSVILD 256

[Close]
BLAST of IVF0020117 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-34
Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 0 

Query: 55  GKVMDIDGRLLDEF-----ATLNNTCIPKVHIAAEASGNEQPEVDVSDEEFLQFETSGVP 114
           G V+  DG LLD       A L NT IPKV+++AE + +EQPE+D+SDEE+LQF+TS VP
Sbjct: 141 GLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSVP 200

Query: 115 AIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHDR---LTKRGGVGVDPSIILD 163
            IVTLTKVG HYI+DAT EEESQMSSAVSIS+NR      LTKR G G+DPS+ILD
Sbjct: 201 VIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSGLDPSVILD 256

The following BLAST results are available for this feature:
BLAST of IVF0020117 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54VM42.1e-0835.96Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 ... [more]
Q150243.9e-0728.95Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3[more]
Q9D0M01.1e-0628.95Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2[more]
Q8TYC24.1e-0426.55Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324... [more]
BLAST of IVF0020117 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BBL29.3e-4495.92Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3B3T51.4e-3981.03exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=... [more]
A0A5A7SRK61.4e-3981.03Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0LU914.9e-3776.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1[more]
A0A6J1JIH07.1e-3672.41exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4... [more]
BLAST of IVF0020117 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059967.14.95e-5895.92exosome complex component RRP42-like [Cucumis melo var. makuwa] >TYJ97220.1 exos... [more]
XP_008441268.16.41e-5081.03PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 P... [more]
XP_038891988.19.26e-4775.00exosome complex component RRP42 isoform X2 [Benincasa hispida][more]
XP_004151651.21.31e-4676.72exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome comple... [more]
XP_038891978.13.70e-4675.00exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891979.1 e... [more]
BLAST of IVF0020117 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G07750.15.0e-3463.793'-5'-exoribonuclease family protein [more]
AT3G07750.25.0e-3463.793'-5'-exoribonuclease family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 44..162
e-value: 4.3E-13
score: 51.3
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 108..143
e-value: 3.2E-5
score: 23.8
NoneNo IPR availablePANTHERPTHR11097:SF30BNAA05G29900D PROTEINcoord: 55..162
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 55..162
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 105..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020117.1IVF0020117.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043928 exonucleolytic catabolism of deadenylated mRNA
biological_process GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0071028 nuclear mRNA surveillance
biological_process GO:0071042 nuclear polyadenylation-dependent mRNA catabolic process
biological_process GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process
biological_process GO:0071038 nuclear polyadenylation-dependent tRNA catabolic process
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process GO:0034473 U1 snRNA 3'-end processing
biological_process GO:0034475 U4 snRNA 3'-end processing
biological_process GO:0034476 U5 snRNA 3'-end processing
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)