IVF0020047 (gene) Melon (IVF77) v1

Overview


Name	IVF0020047
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CYSTM domain-containing protein
Location	chr08: 4565736 .. 4566155 (+)
RNA-Seq Expression	IVF0020047
Synteny	IVF0020047

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACTTGTCATCAACACTTCAATCTGCTAAGCCACGTTGGCAACAACAAACAACCATAAAAACTCTCTTTCTAATTCAATCGAAATGCTAATATCACATAAAATCTGCTCTGGGTTTTGATCTGCATGAAGTAAAAGATGAGCCAAGGCAAGTACGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGACCGCCGCCGCCTCCAGTGGTAGCGCCACCACAATATGCAGCGGCTCCTCCCCAGGGACCCGGATGCCTGGAGGCTTGGTAATTCCAATCATCTAAATCCCAACCTAATGTTTATAACAACCTAATGTTTTCTCTCTATCTTATTTCTCAGTCTTGCTGCCCTGTGCTGCTGCTGTCTTGTTGACCAATGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCTACTAG

mRNA sequence

CTACTTGTCATCAACACTTCAATCTGCTAAGCCACGTTGGCAACAACAAACAACCATAAAAACTCTCTTTCTAATTCAATCGAAATGCTAATATCACATAAAATCTGCTCTGGGTTTTGATCTGCATGAAGTAAAAGATGAGCCAAGGCAAGTACGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGACCGCCGCCGCCTCCAGTGGTAGCGCCACCACAATATGCAGCGGCTCCTCCCCAGGGACCCGGATGCCTGGAGGCTTGTCTTGCTGCCCTGTGCTGCTGCTGTCTTGTTGACCAATGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCTACTAG

Coding sequence (CDS)

ATGAGCCAAGGCAAGTACGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGACCGCCGCCGCCTCCAGTGGTAGCGCCACCACAATATGCAGCGGCTCCTCCCCAGGGACCCGGATGCCTGGAGGCTTGTCTTGCTGCCCTGTGCTGCTGCTGTCTTGTTGACCAATGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCTACTAG

Protein sequence

MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWCCDPWCLFAY

Homology

[Close]

BLAST of IVF0020047 vs. ExPASy TrEMBL
Match: A0A0A0KGL9 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G497280 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.1e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
          MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC
Sbjct: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60

Query: 61 CDPWCLFA 69
          CDPWCLFA
Sbjct: 61 CDPWCLFA 68

[Close]

BLAST of IVF0020047 vs. ExPASy TrEMBL
Match: A0A061DHF5 (CYSTM domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_000918 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.3e-14
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPP-QGPGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQG   PPV+APPQYAA PP +GPG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQG---PPVMAPPQYAAPPPKRGPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of IVF0020047 vs. ExPASy TrEMBL
Match: U5D7A4 (CYSTM domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00046p00231970 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
           MS  KYAYPY  +GYYQG   PPV+APPQYAA PP+  G LE CLAALCCCCL+D+C  C
Sbjct: 66  MSDPKYAYPYPAQGYYQG---PPVMAPPQYAARPPRRAGFLEGCLAALCCCCLIDEC--C 125

Query: 61  CDPWCLF 68
           CDP  +F
Sbjct: 126 CDPSIIF 127

[Close]

BLAST of IVF0020047 vs. ExPASy TrEMBL
Match: A0A2P5YUE9 (CYSTM domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A02G159600v1 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPP-QGPGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQG   PPVVAPPQYAA PP + PG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQG---PPVVAPPQYAAPPPRREPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of IVF0020047 vs. ExPASy TrEMBL
Match: A0A5D2RJF5 (CYSTM domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A02G178200v1 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPP-QGPGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQG   PPVVAPPQYAA PP + PG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQG---PPVVAPPQYAAPPPRREPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of IVF0020047 vs. NCBI nr
Match: KGN48678.1 (hypothetical protein Csa_004171 [Cucumis sativus])

HSP 1 Score: 147 bits (372), Expect = 8.82e-45
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
          MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC
Sbjct: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60

Query: 61 CDPWCLFA 68
          CDPWCLFA
Sbjct: 61 CDPWCLFA 68

[Close]

BLAST of IVF0020047 vs. NCBI nr
Match: KAG6594919.1 (hypothetical protein SDJN03_11472, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121 bits (303), Expect = 3.27e-34
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
           S  KYAYPYY  GYYQGPPPP VVAPP YAAAPPQGPGCLEACLAALCCCCLVDQCCWC
Sbjct: 5  QSHSKYAYPYYSGGYYQGPPPP-VVAPPHYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 64

Query: 61 CDPWCLFAY 69
          CDP+ LFA+
Sbjct: 65 CDPFWLFAF 72

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BLAST of IVF0020047 vs. NCBI nr
Match: XP_007047698.1 (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Theobroma cacao] >EOX91855.1 Uncharacterized protein TCM_000918 [Theobroma cacao])

HSP 1 Score: 85.9 bits (211), Expect = 2.94e-20
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQ-GPGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+ GPG LE CLAALCCCCL+D+CC 
Sbjct: 1  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAAPPPKRGPGFLEGCLAALCCCCLIDECC- 59

Query: 61 CCDP 63
           CDP
Sbjct: 61 -CDP 59

[Close]

BLAST of IVF0020047 vs. NCBI nr
Match: DAD22205.1 (TPA_asm: hypothetical protein HUJ06_023669 [Nelumbo nucifera])

HSP 1 Score: 85.9 bits (211), Expect = 2.94e-20
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQ-GPGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+ GPG LE CLAALCCCCL+D+CC 
Sbjct: 1  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAAPPPRRGPGFLEGCLAALCCCCLIDECC- 59

Query: 61 CCDP 63
           CDP
Sbjct: 61 -CDP 59

[Close]

BLAST of IVF0020047 vs. NCBI nr
Match: KAB2094453.1 (hypothetical protein ES319_A02G159600v1 [Gossypium barbadense] >KAG4212145.1 hypothetical protein ERO13_A02G146200v2 [Gossypium hirsutum] >KHG06826.1 hypothetical protein F383_33724 [Gossypium arboreum] >TYH28846.1 hypothetical protein ES288_A02G176000v1 [Gossypium darwinii] >TYI40656.1 hypothetical protein ES332_A02G178200v1 [Gossypium tomentosum] >TYJ47098.1 hypothetical protein E1A91_A02G164300v1 [Gossypium mustelinum])

HSP 1 Score: 84.0 bits (206), Expect = 1.70e-19
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQG-PGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQGPP   VVAPPQYAA PP+  PG LE CLAALCCCCL+D+CC 
Sbjct: 1  MSDPKYAYPYPAQGYYQGPP---VVAPPQYAAPPPRREPGFLEGCLAALCCCCLIDECC- 59

Query: 61 CCDP 63
           CDP
Sbjct: 61 -CDP 59

[Close]

BLAST of IVF0020047 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 41/72 (56.94%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGP---------GCLEACLAALCCC 60
          MS  KYAYPY   G Y   PPPPV  PPQY   PP  P         G LE  LAALCCC
Sbjct: 1  MSDPKYAYPYPAPGNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLAALCCC 60

Query: 61 CLVDQCCWCCDP 64
          CLVD+C  CCDP
Sbjct: 61 CLVDEC--CCDP 70

[Close]

BLAST of IVF0020047 vs. TAIR 10
Match: AT5G67600.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49845.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 28/54 (51.85%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 6  YAYPYYGEGYYQGPPPPPVVAPPQYAAAP--PQGPGCLEACLAALCCCCLVDQC 58
          Y  P Y +GY     P     PPQY+ AP   Q  G LE CLAALCCCCL+D C
Sbjct: 33 YPPPGYAQGY-----PAQGYPPPQYSQAPQQKQNAGMLEGCLAALCCCCLLDAC 81

[Close]

BLAST of IVF0020047 vs. TAIR 10
Match: AT2G41420.1 (proline-rich family protein )

HSP 1 Score: 40.4 bits (93), Expect = 6.7e-04
Identity = 29/58 (50.00%), Postives = 31/58 (53.45%), Query Frame = 0


Query: 3  QGKYAYPYYGEGY-YQGPPPP--PVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQC 58
          QG     Y  +GY  QG PPP  P   PP         PG LE CLAALCCCCL+D C
Sbjct: 40 QGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCCLLDAC 97

The following BLAST results are available for this feature:

BLAST of IVF0020047 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020047 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGL9	9.1e-33	100.00	CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G497280 PE=3 ...	[more]
A0A061DHF5	7.3e-14	69.12	CYSTM domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_000918 PE=3 SV...	[more]
U5D7A4	2.1e-13	67.16	CYSTM domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00046p...	[more]
A0A2P5YUE9	2.8e-13	69.12	CYSTM domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A02G159...	[more]
A0A5D2RJF5	2.8e-13	69.12	CYSTM domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A02G17...	[more]

BLAST of IVF0020047 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48678.1	8.82e-45	100.00	hypothetical protein Csa_004171 [Cucumis sativus]	[more]
KAG6594919.1	3.27e-34	85.51	hypothetical protein SDJN03_11472, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_007047698.1	2.94e-20	71.88	PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Theobrom...	[more]
DAD22205.1	2.94e-20	71.88	TPA_asm: hypothetical protein HUJ06_023669 [Nelumbo nucifera]	[more]
KAB2094453.1	1.70e-19	71.88	hypothetical protein ES319_A02G159600v1 [Gossypium barbadense] >KAG4212145.1 hyp...	[more]

BLAST of IVF0020047 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33660.1	1.1e-11	56.94	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G67600.1	1.0e-04	51.85	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;...	[more]
AT2G41420.1	6.7e-04	50.00	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 14..58 e-value: 9.3E-9 score: 35.4
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..67
None	No IPR available	PANTHER	PTHR31568:SF105	CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-LIKE	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020047.2	IVF0020047.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane