Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCAGGATGATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTAGATGTTAAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCATGATGATTGCGAAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCTGCATATTGCGTGAGATGCTGGAACTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGGTTCCGTACTCATGCCTGAGGATGAGAAGGAGGGATTTTGTAGAGTCCTCCTACGAGACATGACGAGATAG
mRNA sequence
ATGTCCCAGGATGATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTAGATGTTAAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCATGATGATTGCGAAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCTGCATATTGCGTGAGATGCTGGAACTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGGTTCCGTACTCATGCCTGAGGATGAGAAGGAGGGATTTTGTAGAGTCCTCCTACGAGACATGACGAGATAG
Coding sequence (CDS)
ATGTCCCAGGATGATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTAGATGTTAAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCATGATGATTGCGAAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCTGCATATTGCGTGAGATGCTGGAACTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGGTTCCGTACTCATGCCTGAGGATGAGAAGGAGGGATTTTGTAGAGTCCTCCTACGAGACATGACGAGATAG
Protein sequence
MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLRDMTR
Homology
BLAST of IVF0020009 vs. ExPASy TrEMBL
Match:
A0A5A7UJ27 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00570 PE=3 SV=1)
HSP 1 Score: 239.6 bits (610), Expect = 7.1e-60
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0
Query: 1 MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
MSQDDVRASRPSR SEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA
Sbjct: 357 MSQDDVRASRPSRTSEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 416
Query: 61 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR
Sbjct: 417 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 476
Query: 121 DMTR 125
DMTR
Sbjct: 477 DMTR 480
BLAST of IVF0020009 vs. ExPASy TrEMBL
Match:
A0A5A7UIL3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00420 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 6.0e-51
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 0
Query: 1 MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
+SQDDVRASRPSRA EGRTGSSGSKRKR SQREVDV+GIHLALDQTNEQL MIA+WPAR
Sbjct: 107 LSQDDVRASRPSRALEGRTGSSGSKRKRESQREVDVEGIHLALDQTNEQLRMIAEWPARV 166
Query: 61 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
LAN+NHVRTKFF ILREM ELTSLDR LLQR+LLSRMDDLRG +LMPEDE+EGFCRVLLR
Sbjct: 167 LANENHVRTKFFRILREMPELTSLDRELLQRNLLSRMDDLRGFILMPEDEREGFCRVLLR 226
Query: 121 DMTR 125
DMTR
Sbjct: 227 DMTR 230
BLAST of IVF0020009 vs. ExPASy TrEMBL
Match:
A0A5A7ULC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00760 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 6.0e-51
Identity = 105/124 (84.68%), Postives = 115/124 (92.74%), Query Frame = 0
Query: 1 MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
M Q+DVRASRPSRASEGRT S+GSKRKRGSQREVDV+GIHL L+QTNEQL MI +WPARA
Sbjct: 158 MLQNDVRASRPSRASEGRTRSNGSKRKRGSQREVDVEGIHLMLNQTNEQLRMIVEWPARA 217
Query: 61 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
L NDNHVRTKFFC+LRE ELTSLDRTLLQRH+LSRMDDLRG ++MPEDE+EGFCRVLLR
Sbjct: 218 LVNDNHVRTKFFCVLRETSELTSLDRTLLQRHILSRMDDLRGFIIMPEDEREGFCRVLLR 277
Query: 121 DMTR 125
DMTR
Sbjct: 278 DMTR 281
BLAST of IVF0020009 vs. ExPASy TrEMBL
Match:
A0A5A7URP3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00980 PE=4 SV=1)
HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 108/124 (87.10%), Postives = 117/124 (94.35%), Query Frame = 0
Query: 1 MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
+SQDDVRASRPSRAS GRTGSSGSKRKRGSQREVDV+GIHLALDQTNEQL MIA+WPARA
Sbjct: 73 LSQDDVRASRPSRASVGRTGSSGSKRKRGSQREVDVEGIHLALDQTNEQLRMIAEWPARA 132
Query: 61 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
LAN++HV T+FF IL EM ELTSLDRTLLQRHLLSRMDDLRG VLMPEDE+EGFCRVL+R
Sbjct: 133 LANEDHVHTEFFRILSEMPELTSLDRTLLQRHLLSRMDDLRGFVLMPEDEREGFCRVLVR 192
Query: 121 DMTR 125
D+TR
Sbjct: 193 DITR 196
BLAST of IVF0020009 vs. ExPASy TrEMBL
Match:
A0A5A7VJG4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001280 PE=4 SV=1)
HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 106/124 (85.48%), Postives = 115/124 (92.74%), Query Frame = 0
Query: 1 MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
+SQDDVRASRPSRASEGRTGSSGSKRKRGSQR+ +++ IHLALDQTNEQL IA+WPAR
Sbjct: 152 LSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARN 211
Query: 61 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
LANDNHVRTKFFCILREM ELT+LDR LLQRHLLSRMDDLRG VLMPEDE+EGFCRVLLR
Sbjct: 212 LANDNHVRTKFFCILREMPELTNLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLR 271
Query: 121 DMTR 125
D+ R
Sbjct: 272 DIER 275
BLAST of IVF0020009 vs. NCBI nr
Match:
KAA0055933.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 237 bits (604), Expect = 9.46e-74
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0
Query: 1 MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
MSQDDVRASRPSR SEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA
Sbjct: 357 MSQDDVRASRPSRTSEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 416
Query: 61 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR
Sbjct: 417 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 476
Query: 121 DMTR 124
DMTR
Sbjct: 477 DMTR 480
BLAST of IVF0020009 vs. NCBI nr
Match:
KAA0064312.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20274.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 204 bits (519), Expect = 1.64e-65
Identity = 108/121 (89.26%), Postives = 112/121 (92.56%), Query Frame = 0
Query: 4 DDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALAN 63
+DVRASRPS A EGRTGSSGSKRKRGSQREVDV+GIHLALDQTNEQL MIAKWP AL N
Sbjct: 2 NDVRASRPSCALEGRTGSSGSKRKRGSQREVDVEGIHLALDQTNEQLRMIAKWPTHALTN 61
Query: 64 DNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLRDMT 123
DNHVRT+FF ILREMLELTSLDRTLLQRHLLSRMDDLRG VLMPEDEKE FC+VLLRDMT
Sbjct: 62 DNHVRTEFFRILREMLELTSLDRTLLQRHLLSRMDDLRGFVLMPEDEKEKFCKVLLRDMT 121
BLAST of IVF0020009 vs. NCBI nr
Match:
KAA0058533.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07211.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 206 bits (525), Expect = 2.23e-65
Identity = 108/124 (87.10%), Postives = 117/124 (94.35%), Query Frame = 0
Query: 1 MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
+SQDDVRASRPSRAS GRTGSSGSKRKRGSQREVDV+GIHLALDQTNEQL MIA+WPARA
Sbjct: 73 LSQDDVRASRPSRASVGRTGSSGSKRKRGSQREVDVEGIHLALDQTNEQLRMIAEWPARA 132
Query: 61 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
LAN++HV T+FF IL EM ELTSLDRTLLQRHLLSRMDDLRG VLMPEDE+EGFCRVL+R
Sbjct: 133 LANEDHVHTEFFRILSEMPELTSLDRTLLQRHLLSRMDDLRGFVLMPEDEREGFCRVLVR 192
Query: 121 DMTR 124
D+TR
Sbjct: 193 DITR 196
BLAST of IVF0020009 vs. NCBI nr
Match:
KAA0054417.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96844.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 207 bits (527), Expect = 3.27e-65
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 0
Query: 1 MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
+SQDDVRASRPSRA EGRTGSSGSKRKR SQREVDV+GIHLALDQTNEQL MIA+WPAR
Sbjct: 107 LSQDDVRASRPSRALEGRTGSSGSKRKRESQREVDVEGIHLALDQTNEQLRMIAEWPARV 166
Query: 61 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
LAN+NHVRTKFF ILREM ELTSLDR LLQR+LLSRMDDLRG +LMPEDE+EGFCRVLLR
Sbjct: 167 LANENHVRTKFFRILREMPELTSLDRELLQRNLLSRMDDLRGFILMPEDEREGFCRVLLR 226
Query: 121 DMTR 124
DMTR
Sbjct: 227 DMTR 230
BLAST of IVF0020009 vs. NCBI nr
Match:
TYK29656.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 203 bits (517), Expect = 1.30e-64
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 0
Query: 1 MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
+SQDDV ASRPSRASEGRT SSGSKRKRGSQREVDV+GIHLALDQTN QL MIA+WPA A
Sbjct: 41 LSQDDVHASRPSRASEGRTESSGSKRKRGSQREVDVEGIHLALDQTNNQLKMIAEWPACA 100
Query: 61 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
L NDNHVRT+FF ILREM ELTSLDR LLQRHLLSRMDDLRG VLMPEDE++GFCRVLLR
Sbjct: 101 LVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERDGFCRVLLR 160
Query: 121 DMTR 124
D+TR
Sbjct: 161 DITR 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UJ27 | 7.1e-60 | 99.19 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7UIL3 | 6.0e-51 | 87.90 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7ULC5 | 6.0e-51 | 84.68 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7URP3 | 1.0e-50 | 87.10 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VJG4 | 1.0e-50 | 85.48 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0055933.1 | 9.46e-74 | 99.19 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0064312.1 | 1.64e-65 | 89.26 | retrotransposon protein [Cucumis melo var. makuwa] >TYK20274.1 retrotransposon p... | [more] |
KAA0058533.1 | 2.23e-65 | 87.10 | retrotransposon protein [Cucumis melo var. makuwa] >TYK07211.1 retrotransposon p... | [more] |
KAA0054417.1 | 3.27e-65 | 87.90 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ96844.1 retrotransposon p... | [more] |
TYK29656.1 | 1.30e-64 | 86.29 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |