IVF0020009 (gene) Melon (IVF77) v1

Overview
NameIVF0020009
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr02: 7537190 .. 7537564 (-)
RNA-Seq ExpressionIVF0020009
SyntenyIVF0020009
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCAGGATGATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTAGATGTTAAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCATGATGATTGCGAAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCTGCATATTGCGTGAGATGCTGGAACTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGGTTCCGTACTCATGCCTGAGGATGAGAAGGAGGGATTTTGTAGAGTCCTCCTACGAGACATGACGAGATAG

mRNA sequence

ATGTCCCAGGATGATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTAGATGTTAAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCATGATGATTGCGAAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCTGCATATTGCGTGAGATGCTGGAACTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGGTTCCGTACTCATGCCTGAGGATGAGAAGGAGGGATTTTGTAGAGTCCTCCTACGAGACATGACGAGATAG

Coding sequence (CDS)

ATGTCCCAGGATGATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTAGATGTTAAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCATGATGATTGCGAAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCTGCATATTGCGTGAGATGCTGGAACTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGGTTCCGTACTCATGCCTGAGGATGAGAAGGAGGGATTTTGTAGAGTCCTCCTACGAGACATGACGAGATAG

Protein sequence

MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLRDMTR
Homology
BLAST of IVF0020009 vs. ExPASy TrEMBL
Match: A0A5A7UJ27 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00570 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.1e-60
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0

Query: 1   MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
           MSQDDVRASRPSR SEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA
Sbjct: 357 MSQDDVRASRPSRTSEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 416

Query: 61  LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
           LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR
Sbjct: 417 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 476

Query: 121 DMTR 125
           DMTR
Sbjct: 477 DMTR 480

BLAST of IVF0020009 vs. ExPASy TrEMBL
Match: A0A5A7UIL3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00420 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.0e-51
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 0

Query: 1   MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
           +SQDDVRASRPSRA EGRTGSSGSKRKR SQREVDV+GIHLALDQTNEQL MIA+WPAR 
Sbjct: 107 LSQDDVRASRPSRALEGRTGSSGSKRKRESQREVDVEGIHLALDQTNEQLRMIAEWPARV 166

Query: 61  LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
           LAN+NHVRTKFF ILREM ELTSLDR LLQR+LLSRMDDLRG +LMPEDE+EGFCRVLLR
Sbjct: 167 LANENHVRTKFFRILREMPELTSLDRELLQRNLLSRMDDLRGFILMPEDEREGFCRVLLR 226

Query: 121 DMTR 125
           DMTR
Sbjct: 227 DMTR 230

BLAST of IVF0020009 vs. ExPASy TrEMBL
Match: A0A5A7ULC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00760 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.0e-51
Identity = 105/124 (84.68%), Postives = 115/124 (92.74%), Query Frame = 0

Query: 1   MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
           M Q+DVRASRPSRASEGRT S+GSKRKRGSQREVDV+GIHL L+QTNEQL MI +WPARA
Sbjct: 158 MLQNDVRASRPSRASEGRTRSNGSKRKRGSQREVDVEGIHLMLNQTNEQLRMIVEWPARA 217

Query: 61  LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
           L NDNHVRTKFFC+LRE  ELTSLDRTLLQRH+LSRMDDLRG ++MPEDE+EGFCRVLLR
Sbjct: 218 LVNDNHVRTKFFCVLRETSELTSLDRTLLQRHILSRMDDLRGFIIMPEDEREGFCRVLLR 277

Query: 121 DMTR 125
           DMTR
Sbjct: 278 DMTR 281

BLAST of IVF0020009 vs. ExPASy TrEMBL
Match: A0A5A7URP3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00980 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 108/124 (87.10%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 1   MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
           +SQDDVRASRPSRAS GRTGSSGSKRKRGSQREVDV+GIHLALDQTNEQL MIA+WPARA
Sbjct: 73  LSQDDVRASRPSRASVGRTGSSGSKRKRGSQREVDVEGIHLALDQTNEQLRMIAEWPARA 132

Query: 61  LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
           LAN++HV T+FF IL EM ELTSLDRTLLQRHLLSRMDDLRG VLMPEDE+EGFCRVL+R
Sbjct: 133 LANEDHVHTEFFRILSEMPELTSLDRTLLQRHLLSRMDDLRGFVLMPEDEREGFCRVLVR 192

Query: 121 DMTR 125
           D+TR
Sbjct: 193 DITR 196

BLAST of IVF0020009 vs. ExPASy TrEMBL
Match: A0A5A7VJG4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001280 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 106/124 (85.48%), Postives = 115/124 (92.74%), Query Frame = 0

Query: 1   MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
           +SQDDVRASRPSRASEGRTGSSGSKRKRGSQR+ +++ IHLALDQTNEQL  IA+WPAR 
Sbjct: 152 LSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARN 211

Query: 61  LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
           LANDNHVRTKFFCILREM ELT+LDR LLQRHLLSRMDDLRG VLMPEDE+EGFCRVLLR
Sbjct: 212 LANDNHVRTKFFCILREMPELTNLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLR 271

Query: 121 DMTR 125
           D+ R
Sbjct: 272 DIER 275

BLAST of IVF0020009 vs. NCBI nr
Match: KAA0055933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 237 bits (604), Expect = 9.46e-74
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0

Query: 1   MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
           MSQDDVRASRPSR SEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA
Sbjct: 357 MSQDDVRASRPSRTSEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 416

Query: 61  LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
           LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR
Sbjct: 417 LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 476

Query: 121 DMTR 124
           DMTR
Sbjct: 477 DMTR 480

BLAST of IVF0020009 vs. NCBI nr
Match: KAA0064312.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20274.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 1.64e-65
Identity = 108/121 (89.26%), Postives = 112/121 (92.56%), Query Frame = 0

Query: 4   DDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARALAN 63
           +DVRASRPS A EGRTGSSGSKRKRGSQREVDV+GIHLALDQTNEQL MIAKWP  AL N
Sbjct: 2   NDVRASRPSCALEGRTGSSGSKRKRGSQREVDVEGIHLALDQTNEQLRMIAKWPTHALTN 61

Query: 64  DNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLRDMT 123
           DNHVRT+FF ILREMLELTSLDRTLLQRHLLSRMDDLRG VLMPEDEKE FC+VLLRDMT
Sbjct: 62  DNHVRTEFFRILREMLELTSLDRTLLQRHLLSRMDDLRGFVLMPEDEKEKFCKVLLRDMT 121

BLAST of IVF0020009 vs. NCBI nr
Match: KAA0058533.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07211.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (525), Expect = 2.23e-65
Identity = 108/124 (87.10%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 1   MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
           +SQDDVRASRPSRAS GRTGSSGSKRKRGSQREVDV+GIHLALDQTNEQL MIA+WPARA
Sbjct: 73  LSQDDVRASRPSRASVGRTGSSGSKRKRGSQREVDVEGIHLALDQTNEQLRMIAEWPARA 132

Query: 61  LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
           LAN++HV T+FF IL EM ELTSLDRTLLQRHLLSRMDDLRG VLMPEDE+EGFCRVL+R
Sbjct: 133 LANEDHVHTEFFRILSEMPELTSLDRTLLQRHLLSRMDDLRGFVLMPEDEREGFCRVLVR 192

Query: 121 DMTR 124
           D+TR
Sbjct: 193 DITR 196

BLAST of IVF0020009 vs. NCBI nr
Match: KAA0054417.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96844.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (527), Expect = 3.27e-65
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 0

Query: 1   MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
           +SQDDVRASRPSRA EGRTGSSGSKRKR SQREVDV+GIHLALDQTNEQL MIA+WPAR 
Sbjct: 107 LSQDDVRASRPSRALEGRTGSSGSKRKRESQREVDVEGIHLALDQTNEQLRMIAEWPARV 166

Query: 61  LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
           LAN+NHVRTKFF ILREM ELTSLDR LLQR+LLSRMDDLRG +LMPEDE+EGFCRVLLR
Sbjct: 167 LANENHVRTKFFRILREMPELTSLDRELLQRNLLSRMDDLRGFILMPEDEREGFCRVLLR 226

Query: 121 DMTR 124
           DMTR
Sbjct: 227 DMTR 230

BLAST of IVF0020009 vs. NCBI nr
Match: TYK29656.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (517), Expect = 1.30e-64
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 0

Query: 1   MSQDDVRASRPSRASEGRTGSSGSKRKRGSQREVDVKGIHLALDQTNEQLMMIAKWPARA 60
           +SQDDV ASRPSRASEGRT SSGSKRKRGSQREVDV+GIHLALDQTN QL MIA+WPA A
Sbjct: 41  LSQDDVHASRPSRASEGRTESSGSKRKRGSQREVDVEGIHLALDQTNNQLKMIAEWPACA 100

Query: 61  LANDNHVRTKFFCILREMLELTSLDRTLLQRHLLSRMDDLRGSVLMPEDEKEGFCRVLLR 120
           L NDNHVRT+FF ILREM ELTSLDR LLQRHLLSRMDDLRG VLMPEDE++GFCRVLLR
Sbjct: 101 LVNDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERDGFCRVLLR 160

Query: 121 DMTR 124
           D+TR
Sbjct: 161 DITR 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UJ277.1e-6099.19Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UIL36.0e-5187.90Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7ULC56.0e-5184.68Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7URP31.0e-5087.10Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VJG41.0e-5085.48Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0055933.19.46e-7499.19retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0064312.11.64e-6589.26retrotransposon protein [Cucumis melo var. makuwa] >TYK20274.1 retrotransposon p... [more]
KAA0058533.12.23e-6587.10retrotransposon protein [Cucumis melo var. makuwa] >TYK07211.1 retrotransposon p... [more]
KAA0054417.13.27e-6587.90retrotransposon protein [Cucumis melo var. makuwa] >TYJ96844.1 retrotransposon p... [more]
TYK29656.11.30e-6486.29retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020009.1IVF0020009.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding