IVF0019988 (gene) Melon (IVF77) v1

Overview
NameIVF0019988
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSHSP domain-containing protein
Locationchr05: 22293459 .. 22293790 (+)
RNA-Seq ExpressionIVF0019988
SyntenyIVF0019988
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTCTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAACAGTAGTGGAGGTAGTAATAACAGAGTAGTGGTTATAATAATGCGGAGACGTCGATGGATTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGGTTTACGAGATTGAGGAGTAGTTTGGTTTGAAGGTATCGTTTTTGATGTCGTTGTCGAGAAGAATAAGAGAGATTGTGAATAGAATGAAGTTTGTTGAAGATGTATGCCCTAACATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATATGA

mRNA sequence

ATGGGTCTCTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAACAGTAGTGGAGGTAGTAATAACAGAGTAGTGGTTATAATAATGCGGAGACGTCGATGGATTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGAAGAATAAGAGAGATTGTGAATAGAATGAAGTTTGTTGAAGATGTATGCCCTAACATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATATGA

Coding sequence (CDS)

ATGGGTCTCTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAACAGTAGTGGAGGTAGTAATAACAGAGTAGTGGTTATAATAATGCGGAGACGTCGATGGATTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGAAGAATAAGAGAGATTGTGAATAGAATGAAGTTTGTTGAAGATGTATGCCCTAACATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATATGA

Protein sequence

MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI
Homology
BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A5D3BCS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00490 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.0e-41
Identity = 90/110 (81.82%), Postives = 90/110 (81.82%), Query Frame = 0

Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLY---- 60
           MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLY    
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  ----------------RRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 91
                           RRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110

BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A0A0LJ29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 79/110 (71.82%), Postives = 83/110 (75.45%), Query Frame = 0

Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLY---- 60
           M LLEIAGIGGRRWECHYEKLN SGGSN    V++MRRRRW+KKMLKRGMKGFRLY    
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLN-SGGSNR---VVVMRRRRWVKKMLKRGMKGFRLYRFTR 60

Query: 61  ----------------RRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 91
                           RRIREIV+RMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LKSSFGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A7J7H3I9 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_017039 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 0

Query: 11  GRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIR---------- 70
           G RW   Y++L     SN+R  V +  RRRW+ +M  + +KGFRL +  R          
Sbjct: 8   GGRWTTRYKRLT----SNDREKVAVRPRRRWVTRMNGK-LKGFRLPQSKRLNWKAFSIVM 67

Query: 71  ----------EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 90
                     E+VNRMK  +++CP IIFS QWGLPVLS+
Sbjct: 68  LPRRMAQIYAEVVNRMK-TDEICPAIIFSGQWGLPVLSH 100

BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A6A4KLK9 (SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_21367 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 0

Query: 4   LEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR------ 63
           +EI+ + G RW   YEKL  +G  + +       RRRW  KM  R  +G RL R      
Sbjct: 128 IEISDVVGGRWRIRYEKL--TGIDHEKAAA--RPRRRWAMKMNGR-FRGIRLPRCRKLNW 187

Query: 64  ----------RIR----EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 90
                     RI     EI+NRMK ++D+CP I+FS  WGLPVLS+
Sbjct: 188 RAFAILMSPKRIAEMYGEIINRMKMMDDICPGIVFSGHWGLPVLSH 228

BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A061F3B0 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 0

Query: 9  IGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIR-------- 68
          +GG    C YEKL + G +          RRRW+KKM   G+KG RL R  +        
Sbjct: 10 LGGHPVPCRYEKLRNVGDAR--------PRRRWVKKM-SGGLKGLRLSRSRKLKTLCSVV 69

Query: 69 ----------EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 90
                    +I +R+K    +CPNIIF+T WGLP LS+
Sbjct: 70 FANRITRIYADIAHRLKMDGTLCPNIIFATHWGLPTLSH 99

BLAST of IVF0019988 vs. NCBI nr
Match: KAA0056096.1 (hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ96421.1 hypothetical protein E5676_scaffold546G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 2.17e-54
Identity = 90/110 (81.82%), Postives = 90/110 (81.82%), Query Frame = 0

Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR--- 60
           MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR   
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  -----------------RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 90
                            RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110

BLAST of IVF0019988 vs. NCBI nr
Match: KGN61039.1 (hypothetical protein Csa_021124 [Cucumis sativus])

HSP 1 Score: 147 bits (372), Expect = 6.36e-44
Identity = 79/110 (71.82%), Postives = 83/110 (75.45%), Query Frame = 0

Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR--- 60
           M LLEIAGIGGRRWECHYEKLNS GGSN    V++MRRRRW+KKMLKRGMKGFRLYR   
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNS-GGSNR---VVVMRRRRWVKKMLKRGMKGFRLYRFTR 60

Query: 61  -----------------RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 90
                            RIREIV+RMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LKSSFGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

BLAST of IVF0019988 vs. NCBI nr
Match: KAG6599155.1 (Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (255), Expect = 3.93e-23
Identity = 61/108 (56.48%), Postives = 66/108 (61.11%), Query Frame = 0

Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR--- 60
           MGLLE AGIGGRRW   YEKL+           ++  RRRW+KK LKRG KGFRLYR   
Sbjct: 452 MGLLETAGIGGRRWN-QYEKLHCEDND------VVKCRRRWMKKTLKRGKKGFRLYRLTR 511

Query: 61  ----------------RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSY 89
                           RIREIVNRMK VEDVC N+IF TQWGLP LSY
Sbjct: 512 SRSFCLKVSFLVLMSRRIREIVNRMK-VEDVCANVIFFTQWGLPTLSY 551

BLAST of IVF0019988 vs. NCBI nr
Match: KAF5946811.1 (hypothetical protein HYC85_017039 [Camellia sinensis])

HSP 1 Score: 61.2 bits (147), Expect = 1.14e-09
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 0

Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIR 60
           MG  ++  +GGR W   Y++L S    N+R  V +  RRRW+ +M  + +KGFRL +  R
Sbjct: 1   MGFEDV--VGGR-WTTRYKRLTS----NDREKVAVRPRRRWVTRMNGK-LKGFRLPQSKR 60

Query: 61  --------------------EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 89
                               E+VNRMK  +++CP IIFS QWGLPVLS+
Sbjct: 61  LNWKAFSIVMLPRRMAQIYAEVVNRMK-TDEICPAIIFSGQWGLPVLSH 100

BLAST of IVF0019988 vs. NCBI nr
Match: KAE9446725.1 (hypothetical protein C3L33_21367, partial [Rhododendron williamsianum])

HSP 1 Score: 61.2 bits (147), Expect = 8.67e-09
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 0

Query: 4   LEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR------ 63
           +EI+ + G RW   YEKL  +G  + +       RRRW  KM  R  +G RL R      
Sbjct: 128 IEISDVVGGRWRIRYEKL--TGIDHEKAAA--RPRRRWAMKMNGR-FRGIRLPRCRKLNW 187

Query: 64  ----------RIRE----IVNRMKFVEDVCPNIIFSTQWGLPVLSY 89
                     RI E    I+NRMK ++D+CP I+FS  WGLPVLS+
Sbjct: 188 RAFAILMSPKRIAEMYGEIINRMKMMDDICPGIVFSGHWGLPVLSH 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BCS37.0e-4181.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJ291.2e-3271.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1[more]
A0A7J7H3I91.1e-0640.40Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_017039 PE=4 SV=1[more]
A0A6A4KLK91.1e-0639.62SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=26292... [more]
A0A061F3B07.3e-0637.37Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0056096.12.17e-5481.82hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ9642... [more]
KGN61039.16.36e-4471.82hypothetical protein Csa_021124 [Cucumis sativus][more]
KAG6599155.13.93e-2356.48Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia][more]
KAF5946811.11.14e-0939.45hypothetical protein HYC85_017039 [Camellia sinensis][more]
KAE9446725.18.67e-0939.62hypothetical protein C3L33_21367, partial [Rhododendron williamsianum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35123:SF3OS07G0633900 PROTEINcoord: 60..89
NoneNo IPR availablePANTHERPTHR35123OS07G0633900 PROTEIN-RELATEDcoord: 10..57
NoneNo IPR availablePANTHERPTHR35123:SF3OS07G0633900 PROTEINcoord: 10..57
NoneNo IPR availablePANTHERPTHR35123OS07G0633900 PROTEIN-RELATEDcoord: 60..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019988.1IVF0019988.1mRNA