IVF0019950 (gene) Melon (IVF77) v1

Overview


Name	IVF0019950
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transposon Tf2-1 polyprotein isoform X1
Location	chr02: 10988594 .. 10988992 (-)
RNA-Seq Expression	IVF0019950
Synteny	IVF0019950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCTGGATTGACTGAGTTTGAAGGCCGATAATCAACAACGATAGTACCAGGTACTTATGAAATATATTGTAAGTATTATTAATGAGAAATCGGTTACGACCTTCGATACAGAAGGTTCATCTAGCAAATTGAAAGAAACTGGTGGGAAGAAGATTGAAGGAATAGCGATAAGCAAAGAATCAAACGATGAGACAAAAAAAGAAGTGAAGGAAGAAGAAGATAAAACAGTTGATCGGAATAAGTTTAAAAAAGTGGAAATGCCTGTTTTCAATGGAAATGATCCTGACTCGTGGTTATTCCGAGCCGATCGATATTTCCAAATCCGTAAAGTAATAGAAATGGAGAAGATGACCGTTTCTATCATAAGTTTTGATGGACCGGGTCTCGATTGGTACTGA

mRNA sequence

AACCTGGATTGACTGAGTTTGAAGGCCGATAATCAACAACGATAGTACCAGGTACTTATGAAATATATTGTAAGTATTATTAATGAGAAATCGGTTACGACCTTCGATACAGAAGGTTCATCTAGCAAATTGAAAGAAACTGGTGGGAAGAAGATTGAAGGAATAGCGATAAGCAAAGAATCAAACGATGAGACAAAAAAAGAAGTGAAGGAAGAAGAAGATAAAACAGTTGATCGGAATAAGTTTAAAAAAGTGGAAATGCCTGTTTTCAATGGAAATGATCCTGACTCGTGGTTATTCCGAGCCGATCGATATTTCCAAATCCGTAAAGTAATAGAAATGGAGAAGATGACCGTTTCTATCATAAGTTTTGATGGACCGGGTCTCGATTGGTACTGA

Coding sequence (CDS)

ATGAAATATATTGTAAGTATTATTAATGAGAAATCGGTTACGACCTTCGATACAGAAGGTTCATCTAGCAAATTGAAAGAAACTGGTGGGAAGAAGATTGAAGGAATAGCGATAAGCAAAGAATCAAACGATGAGACAAAAAAAGAAGTGAAGGAAGAAGAAGATAAAACAGTTGATCGGAATAAGTTTAAAAAAGTGGAAATGCCTGTTTTCAATGGAAATGATCCTGACTCGTGGTTATTCCGAGCCGATCGATATTTCCAAATCCGTAAAGTAATAGAAATGGAGAAGATGACCGTTTCTATCATAAGTTTTGATGGACCGGGTCTCGATTGGTACTGA

Protein sequence

MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDRNKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLDWY

Homology

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BLAST of IVF0019950 vs. ExPASy TrEMBL
Match: A0A5A7SV77 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002760 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKYIVSIINEKSVTTFDTEGSSSKLKETG KKIEGIAISKESNDETKKEVKEEEDKTVDR
Sbjct: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGRKKIEGIAISKESNDETKKEVKEEEDKTVDR 60

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLDW 113
           NKFKK+EMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVS+ISFDGPGLDW
Sbjct: 61  NKFKKMEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSVISFDGPGLDW 112

[Close]

BLAST of IVF0019950 vs. ExPASy TrEMBL
Match: A0A5A7T5W7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00210 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.2e-35
Identity = 80/113 (70.80%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKY+ + +NEKS TT D EG SSK+K        GIA S ESN+ETKKEVK+EEDKT +R
Sbjct: 79  MKYMDNFVNEKSTTTSDQEGFSSKMK--------GIANSDESNEETKKEVKDEEDKTAER 138

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLDWY 114
           +KFKKVEMPVF GNDPDSWLFRADRYFQI K+ + EKMTVSIISFDGP LDW+
Sbjct: 139 SKFKKVEMPVFTGNDPDSWLFRADRYFQIHKLTDAEKMTVSIISFDGPALDWF 183

[Close]

BLAST of IVF0019950 vs. ExPASy TrEMBL
Match: A0A5D3D379 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00780 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.7e-34
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKY+ +++NEKS TT D EGSSSK+K        GIA S ESN+ETKKEVK+EEDK  +R
Sbjct: 79  MKYMDNVVNEKSTTTSDLEGSSSKMK--------GIANSDESNEETKKEVKDEEDKAAER 138

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLDWY 114
           NKFKKVEM VF GNDP+SWLFRADRYFQI K+ + EKMTVS+ISFDGP LDW+
Sbjct: 139 NKFKKVEMLVFTGNDPNSWLFRADRYFQIHKLTDAEKMTVSVISFDGPALDWF 183

[Close]

BLAST of IVF0019950 vs. ExPASy TrEMBL
Match: A0A5D3BLG2 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00210 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 71/113 (62.83%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKY+ +++NEKS T+ D EGSSSK+KE        +    +S  ETKKEVK+E++K  +R
Sbjct: 79  MKYMDNVVNEKSTTSSDLEGSSSKMKE--------VINGDDSTKETKKEVKDEDNKAAER 138

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLDWY 114
           +KFKKVEMPVF GNDPDSWLFRADRYFQI K+ + EKMTVS+ISFDGP LDW+
Sbjct: 139 SKFKKVEMPVFTGNDPDSWLFRADRYFQIHKLTDAEKMTVSVISFDGPALDWF 183

[Close]

BLAST of IVF0019950 vs. ExPASy TrEMBL
Match: A0A5A7TW94 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00140 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.4e-30
Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKYI SI+NEKSVTT DT+G SSK  E G KKIE + ISKE  +ETKK  KE+EDK+VDR
Sbjct: 45  MKYIESIVNEKSVTTSDTKG-SSKSMEIGRKKIESMTISKEQLEETKKNTKEKEDKSVDR 104

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLD 112
           NKF+KVEMPVF+GN P+ WLF+ + YFQI K+   +KMTV +ISFDGP LD
Sbjct: 105 NKFRKVEMPVFDGNSPNLWLFKGNHYFQIHKLSNSKKMTVFVISFDGPTLD 154

[Close]

BLAST of IVF0019950 vs. NCBI nr
Match: KAA0035174.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (554), Expect = 1.74e-65
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKYIVSIINEKSVTTFDTEGSSSKLKETG KKIEGIAISKESNDETKKEVKEEEDKTVDR
Sbjct: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGRKKIEGIAISKESNDETKKEVKEEEDKTVDR 60

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLDW 112
           NKFKK+EMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVS+ISFDGPGLDW
Sbjct: 61  NKFKKMEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSVISFDGPGLDW 112

[Close]

BLAST of IVF0019950 vs. NCBI nr
Match: KAA0036991.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 7.39e-44
Identity = 80/113 (70.80%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKY+ + +NEKS TT D EG SSK+K        GIA S ESN+ETKKEVK+EEDKT +R
Sbjct: 79  MKYMDNFVNEKSTTTSDQEGFSSKMK--------GIANSDESNEETKKEVKDEEDKTAER 138

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLDWY 113
           +KFKKVEMPVF GNDPDSWLFRADRYFQI K+ + EKMTVSIISFDGP LDW+
Sbjct: 139 SKFKKVEMPVFTGNDPDSWLFRADRYFQIHKLTDAEKMTVSIISFDGPALDWF 183

[Close]

BLAST of IVF0019950 vs. NCBI nr
Match: TYK17139.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (394), Expect = 1.60e-41
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKY+ +++NEKS TT D EGSSSK+K        GIA S ESN+ETKKEVK+EEDK  +R
Sbjct: 79  MKYMDNVVNEKSTTTSDLEGSSSKMK--------GIANSDESNEETKKEVKDEEDKAAER 138

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLDWY 113
           NKFKKVEM VF GNDP+SWLFRADRYFQI K+ + EKMTVS+ISFDGP LDW+
Sbjct: 139 NKFKKVEMLVFTGNDPNSWLFRADRYFQIHKLTDAEKMTVSVISFDGPALDWF 183

[Close]

BLAST of IVF0019950 vs. NCBI nr
Match: KAA0066078.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYJ99819.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (368), Expect = 5.13e-40
Identity = 71/113 (62.83%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKY+ +++NEKS T+ D EGSSSK+KE        +    +S  ETKKEVK+E++K  +R
Sbjct: 79  MKYMDNVVNEKSTTSSDLEGSSSKMKE--------VINGDDSTKETKKEVKDEDNKAAER 138

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLDWY 113
           +KFKKVEMPVF GNDPDSWLFRADRYFQI K+ + EKMTVS+ISFDGP LDW+
Sbjct: 139 SKFKKVEMPVFTGNDPDSWLFRADRYFQIHKLTDAEKMTVSVISFDGPALDWF 183

[Close]

BLAST of IVF0019950 vs. NCBI nr
Match: KAA0047224.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 6.44e-40
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MKYIVSIINEKSVTTFDTEGSSSKLKETGGKKIEGIAISKESNDETKKEVKEEEDKTVDR 60
           MKYI SI+NEKSVTT DT+GSS  + E G KKIE + ISKE  +ETKK  KE+EDK+VDR
Sbjct: 45  MKYIESIVNEKSVTTSDTKGSSKSM-EIGRKKIESMTISKEQLEETKKNTKEKEDKSVDR 104

Query: 61  NKFKKVEMPVFNGNDPDSWLFRADRYFQIRKVIEMEKMTVSIISFDGPGLD 111
           NKF+KVEMPVF+GN P+ WLF+ + YFQI K+   +KMTV +ISFDGP LD
Sbjct: 105 NKFRKVEMPVFDGNSPNLWLFKGNHYFQIHKLSNSKKMTVFVISFDGPTLD 154

The following BLAST results are available for this feature:

BLAST of IVF0019950 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SV77	1.0e-52	97.32	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7T5W7	4.2e-35	70.80	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3D379	2.7e-34	69.03	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BLG2	2.2e-31	62.83	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TW94	2.4e-30	66.67	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0019950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035174.1	1.74e-65	97.32	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036991.1	7.39e-44	70.80	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gyp...	[more]
TYK17139.1	1.60e-41	69.03	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066078.1	5.13e-40	62.83	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYJ99819.1 t...	[more]
KAA0047224.1	6.44e-40	65.77	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0019950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019950.1	IVF0019950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding