IVF0019948 (gene) Melon (IVF77) v1

Overview


Name	IVF0019948
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 547341 .. 547674 (+)
RNA-Seq Expression	IVF0019948
Synteny	IVF0019948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATTTCTTCTTATCTTGGTTTTATGTCTGTTCTTGTTGATCGCCTTCTGGAATATCGAATATTTAATGAAAATAGAAACCCGTTTGGTTTTTACGCATTATGTCTTTCTGCTCTAGTCCACACTGTGAATACAATACCCACCATTCACTTGAATCAAATTCAGCTTCCAAGTTATGTTATTCATTTTACTGTGATGTATTAGTCATCAATGATATGATCGTGCGTCCCAAGTGTTCGACGAAATGCCTAAGTGGGAAGTAAGCTTTGAGACGACCAATTCTCTGTTCGCACTGATGAAGAGAACCGCGAGAGGCTTTTGGATCATTTAG

mRNA sequence

ATGTTGATTTCTTCTTATCTTGGTTTTATGTCTGTTCTTGTTGATCGCCTTCTGGAATATCGAATATTTAATGAAAATAGAAACCCGTTTGGTTTTTACGCATTATGTCTTTCTGCTCTAGTCCACACTGTGAATACAATACCCACCATTCACTTGAATCAAATTCAGCTTCCAATGTTCGACGAAATGCCTAAGTGGGAAGTAAGCTTTGAGACGACCAATTCTCTGTTCGCACTGATGAAGAGAACCGCGAGAGGCTTTTGGATCATTTAG

Coding sequence (CDS)

ATGTTGATTTCTTCTTATCTTGGTTTTATGTCTGTTCTTGTTGATCGCCTTCTGGAATATCGAATATTTAATGAAAATAGAAACCCGTTTGGTTTTTACGCATTATGTCTTTCTGCTCTAGTCCACACTGTGAATACAATACCCACCATTCACTTGAATCAAATTCAGCTTCCAATGTTCGACGAAATGCCTAAGTGGGAAGTAAGCTTTGAGACGACCAATTCTCTGTTCGCACTGATGAAGAGAACCGCGAGAGGCTTTTGGATCATTTAG

Protein sequence

MLISSYLGFMSVLVDRLLEYRIFNENRNPFGFYALCLSALVHTVNTIPTIHLNQIQLPMFDEMPKWEVSFETTNSLFALMKRTARGFWII

Homology

[Close]

BLAST of IVF0019948 vs. ExPASy TrEMBL
Match: A0A0A0L1S7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280680 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-37
Identity = 83/106 (78.30%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 1   MLISSYLGFMSVLVDRLLEYRIFNENRNPFGFYALCLSALVHTVNTIPTIHLNQIQLP-- 60
           MLISSY GFMSVLVDR++EYRIFNENRNPFGFYALCLSALV TVNTIPTIHLNQIQLP  
Sbjct: 1   MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60

Query: 61  --------------MFDEMPKWEVSFETTNSLFALMKRTARGFWII 91
                         +FDEMPKWEVSFETTN LFALMKRT RGFWII
Sbjct: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 106

[Close]

BLAST of IVF0019948 vs. NCBI nr
Match: KGN54091.1 (hypothetical protein Csa_017896 [Cucumis sativus])

HSP 1 Score: 163 bits (413), Expect = 3.56e-50
Identity = 83/106 (78.30%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 1   MLISSYLGFMSVLVDRLLEYRIFNENRNPFGFYALCLSALVHTVNTIPTIHLNQIQLP-- 60
           MLISSY GFMSVLVDR++EYRIFNENRNPFGFYALCLSALV TVNTIPTIHLNQIQLP  
Sbjct: 1   MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60

Query: 61  --------------MFDEMPKWEVSFETTNSLFALMKRTARGFWII 90
                         +FDEMPKWEVSFETTN LFALMKRT RGFWII
Sbjct: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 106

The following BLAST results are available for this feature:

BLAST of IVF0019948 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1S7	4.7e-37	78.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280680 PE=4 SV=1	[more]

BLAST of IVF0019948 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54091.1	3.56e-50	78.30	hypothetical protein Csa_017896 [Cucumis sativus]	[more]

BLAST of IVF0019948 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019948.1	IVF0019948.1	mRNA