IVF0019941 (gene) Melon (IVF77) v1

Overview
NameIVF0019941
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLate embryogenesis abundant protein D-29-like
Locationchr07: 20488171 .. 20488467 (+)
RNA-Seq ExpressionIVF0019941
SyntenyIVF0019941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTTAGAAATTAAAGATGTTTGGATTGTTGCTGTAAGAATCTTGAAGGAGGGGGAGCAACCTCAACCGGTGACGGAGAAGGTGAAAGAAACGCTGGTGAGCCGAAAAGATAAGGCTGCGAAGGAGAAGAAGAATGAGAACTACGAAACGGCAAGAGAAATGGCGTCAAAGACAGTGGGGGAAATTGGGTGTAGGATTAGGGAGAAAACTGAGAGACTGAGTTGTGTAATGGACGTTTTTGTTGAGTTGAAGTGGAGAAAGTGTTTAATCTTAAGAAGACGTAATCAAGTTTAG

mRNA sequence

ATGTCCTTAGAAATTAAAGATGTTTGGATTGTTGCTGTAAGAATCTTGAAGGAGGGGGAGCAACCTCAACCGGTGACGGAGAAGGTGAAAGAAACGCTGGTGAGCCGAAAAGATAAGGCTGCGAAGGAGAAGAAGAATGAGAACTACGAAACGGCAAGAGAAATGGCGTCAAAGACAGTGGGGGAAATTGGGTGTAGGATTAGGGAGAAAACTGAGAGACTGAGTTGTGTAATGGACGTTTTTGTTGAGTTGAAGTGGAGAAAGTGTTTAATCTTAAGAAGACGTAATCAAGTTTAG

Coding sequence (CDS)

ATGTCCTTAGAAATTAAAGATGTTTGGATTGTTGCTGTAAGAATCTTGAAGGAGGGGGAGCAACCTCAACCGGTGACGGAGAAGGTGAAAGAAACGCTGGTGAGCCGAAAAGATAAGGCTGCGAAGGAGAAGAAGAATGAGAACTACGAAACGGCAAGAGAAATGGCGTCAAAGACAGTGGGGGAAATTGGGTGTAGGATTAGGGAGAAAACTGAGAGACTGAGTTGTGTAATGGACGTTTTTGTTGAGTTGAAGTGGAGAAAGTGTTTAATCTTAAGAAGACGTAATCAAGTTTAG

Protein sequence

MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTVGEIGCRIREKTERLSCVMDVFVELKWRKCLILRRRNQV
Homology
[Close]
BLAST of IVF0019941 vs. ExPASy TrEMBL
Match: A0A5D3CZE5 (Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004990 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV 60
          MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV
Sbjct: 1  MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV 60

Query: 61 GEIGCRIREKTERLSCVMDVFVELKWRKCLILRR 95
          GEIGCRIREKTERLSCVMDVFVELKWRKCLILRR
Sbjct: 61 GEIGCRIREKTERLSCVMDVFVELKWRKCLILRR 94

[Close]
BLAST of IVF0019941 vs. ExPASy TrEMBL
Match: A0A5A7TRN2 (Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00870 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.3e-42
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV 60
          MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV
Sbjct: 1  MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV 60

Query: 61 GEIGCRIREKTERLSCVMDVFVELKWRKCLILRRR 96
          GEIGCRIREKTER SCVMDVFVELKWRKCLILRRR
Sbjct: 61 GEIGCRIREKTERPSCVMDVFVELKWRKCLILRRR 95

[Close]
BLAST of IVF0019941 vs. ExPASy TrEMBL
Match: A0A0A0KUJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046680 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.9e-10
Identity = 43/57 (75.44%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 24  PVTEKVKETLVSRKDK------AAKEKKNENYETAREMASKTVGEIGCRIREKTERL 75
           P  EKVKETLVS KDK      AAKEKKNEN ETAREMASKT GEIGCRIREK+  L
Sbjct: 151 PAAEKVKETLVSGKDKAAEMYEAAKEKKNENCETAREMASKTAGEIGCRIREKSAEL 207

[Close]
BLAST of IVF0019941 vs. ExPASy TrEMBL
Match: A0A5A7TSE6 (Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004980 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-09
Identity = 44/64 (68.75%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 17  KEGEQPQPVTEKVKETLVSRKDK------AAKEKKNENYETAREMASKTVGEIGCRIREK 75
           K G+     TEKVKETLVS KDK      AAKEKK EN ETAREMASKT  EIGCRIREK
Sbjct: 143 KSGDVVGTATEKVKETLVSGKDKAAEVYEAAKEKKKENCETAREMASKTAEEIGCRIREK 202

[Close]
BLAST of IVF0019941 vs. ExPASy TrEMBL
Match: A0A1S3BT31 (late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC103493195 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-09
Identity = 44/64 (68.75%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 17  KEGEQPQPVTEKVKETLVSRKDK------AAKEKKNENYETAREMASKTVGEIGCRIREK 75
           K G+     TEKVKETLVS KDK      AAKEKK EN ETAREMASKT  EIGCRIREK
Sbjct: 143 KSGDVVGTATEKVKETLVSGKDKAAEVYEAAKEKKKENCETAREMASKTAEEIGCRIREK 202

[Close]
BLAST of IVF0019941 vs. NCBI nr
Match: KAA0044796.1 (late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (461), Expect = 2.28e-56
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV 60
          MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV
Sbjct: 1  MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV 60

Query: 61 GEIGCRIREKTERLSCVMDVFVELKWRKCLILRRR 95
          GEIGCRIREKTER SCVMDVFVELKWRKCLILRRR
Sbjct: 61 GEIGCRIREKTERPSCVMDVFVELKWRKCLILRRR 95

[Close]
BLAST of IVF0019941 vs. NCBI nr
Match: TYK16668.1 (late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 5.27e-56
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1  MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV 60
          MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV
Sbjct: 1  MSLEIKDVWIVAVRILKEGEQPQPVTEKVKETLVSRKDKAAKEKKNENYETAREMASKTV 60

Query: 61 GEIGCRIREKTERLSCVMDVFVELKWRKCLILRRRN 96
          GEIGCRIREKTERLSCVMDVFVELKWRKCLILRR  
Sbjct: 61 GEIGCRIREKTERLSCVMDVFVELKWRKCLILRRHR 96

[Close]
BLAST of IVF0019941 vs. NCBI nr
Match: XP_004146555.1 (late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53305.1 hypothetical protein Csa_015110 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 2.48e-13
Identity = 43/57 (75.44%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 24  PVTEKVKETLVSRKDKAA------KEKKNENYETAREMASKTVGEIGCRIREKTERL 74
           P  EKVKETLVS KDKAA      KEKKNEN ETAREMASKT GEIGCRIREK+  L
Sbjct: 151 PAAEKVKETLVSGKDKAAEMYEAAKEKKNENCETAREMASKTAGEIGCRIREKSAEL 207

[Close]
BLAST of IVF0019941 vs. NCBI nr
Match: XP_008452083.1 (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044797.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa] >TYK16667.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.33e-12
Identity = 44/64 (68.75%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 17  KEGEQPQPVTEKVKETLVSRKDKAA------KEKKNENYETAREMASKTVGEIGCRIREK 74
           K G+     TEKVKETLVS KDKAA      KEKK EN ETAREMASKT  EIGCRIREK
Sbjct: 143 KSGDVVGTATEKVKETLVSGKDKAAEVYEAAKEKKKENCETAREMASKTAEEIGCRIREK 202

The following BLAST results are available for this feature:
BLAST of IVF0019941 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0019941 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CZE52.4e-42100.00Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TRN25.3e-4298.95Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KUJ56.9e-1075.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046680 PE=4 SV=1[more]
A0A5A7TSE64.5e-0968.75Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3BT314.5e-0968.75late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
BLAST of IVF0019941 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044796.12.28e-5698.95late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa][more]
TYK16668.15.27e-5697.92late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa][more]
XP_004146555.12.48e-1375.44late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53305.1 hypotheti... [more]
XP_008452083.11.33e-1268.75PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044... [more]
BLAST of IVF0019941 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019941.1IVF0019941.1mRNA