IVF0019768 (gene) Melon (IVF77) v1

Overview


Name	IVF0019768
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr06: 21131417 .. 21131695 (-)
RNA-Seq Expression	IVF0019768
Synteny	IVF0019768

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTAGAAAGATATGATATTGAGAAGTTTGATGGTAAGGGATATTTTACCTTATGGAAAGCAAAGATGAAAGCCATCGTTGGCCAGCGAAAGAAATTGAAAGCTATCATTGATCCAGAAAAGCTACCTAAAAAAATGACTCAAGAAGAAAAAGAAACTATGGAAAATGCAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAGAGAGGTAATTGGTAAAGAAACAGCTTATGGAATGTGGCAGAAATTGGAAGAACTTTATTAG

mRNA sequence

ATGGCAGTAGAAAGATATGATATTGAGAAGTTTGATGGTAAGGGATATTTTACCTTATGGAAAGCAAAGATGAAAGCCATCGTTGGCCAGCGAAAGAAATTGAAAGCTATCATTGATCCAGAAAAGCTACCTAAAAAAATGACTCAAGAAGAAAAAGAAACTATGGAAAATGCAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAGAGAGGTAATTGGTAAAGAAACAGCTTATGGAATGTGGCAGAAATTGGAAGAACTTTATTAG

Coding sequence (CDS)

ATGGCAGTAGAAAGATATGATATTGAGAAGTTTGATGGTAAGGGATATTTTACCTTATGGAAAGCAAAGATGAAAGCCATCGTTGGCCAGCGAAAGAAATTGAAAGCTATCATTGATCCAGAAAAGCTACCTAAAAAAATGACTCAAGAAGAAAAAGAAACTATGGAAAATGCAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAGAGAGGTAATTGGTAAAGAAACAGCTTATGGAATGTGGCAGAAATTGGAAGAACTTTATTAG

Protein sequence

MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAYGAIVLNLSDNVLREVIGKETAYGMWQKLEELY

Homology

[Close]

BLAST of IVF0019768 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-09
Identity = 31/92 (33.70%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60
          M+  +Y++ KF+G   F+ W+ +M+ ++ Q+   K +    K P  M  E+   ++  A 
Sbjct: 1  MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60

Query: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 93
           AI L+LSD+V+  +I ++TA G+W +LE LY
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLY 92

[Close]

BLAST of IVF0019768 vs. ExPASy TrEMBL
Match: A0A5D3BQH4 (Transcription initiation factor TFIID subunit 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00230 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 6.9e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60
          MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY
Sbjct: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60

Query: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 93
          GAIVLNLSDNVLREVIGKETAYGMWQKLEELY
Sbjct: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 92

[Close]

BLAST of IVF0019768 vs. ExPASy TrEMBL
Match: A0A1S4DV47 (uncharacterized protein LOC107990692 OS=Cucumis melo OX=3656 GN=LOC107990692 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1   MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60
           +AV RYDIEKFDGKG FTLWKAK+KAIVGQ+K LKA+ DPEKLPK M QE+ ETMENAAY
Sbjct: 45  IAVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETMENAAY 104

Query: 61  GAIVLNLSDNVLREVI 77
            AIVLNLSD+VLRE+I
Sbjct: 105 SAIVLNLSDSVLRELI 120

[Close]

BLAST of IVF0019768 vs. ExPASy TrEMBL
Match: A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20
Identity = 45/92 (48.91%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60
          M   +++IEKFDG G FTLW  ++ AI+G +K LKA+ DP++LP  +T+ E+ET+E  AY
Sbjct: 1  MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 93
            +++N++DNVLR+VI + TA+  W+KL+ LY
Sbjct: 61 STLIMNITDNVLRQVIEETTAFATWEKLKSLY 92

[Close]

BLAST of IVF0019768 vs. ExPASy TrEMBL
Match: A0A5C7HB65 (gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019315 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 5   RYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAYGAIV 64
           ++DI+KFDG G F +W+ K+KA++ Q+K LKAI  PEKLP  +T E+K+ M   A G I+
Sbjct: 76  KFDIDKFDGSGDFGIWRRKVKALLSQQKILKAIEGPEKLPDSLTVEQKDDMLEMALGTII 135

Query: 65  LNLSDNVLREVIGKETAYGMWQKLEELY 93
           LNLSDNVLRE+  ++TA  +W+KLE LY
Sbjct: 136 LNLSDNVLREINDEKTACDVWKKLESLY 163

[Close]

BLAST of IVF0019768 vs. ExPASy TrEMBL
Match: A0A5C7GXL9 (Sucrose-phosphate phosphatase OS=Acer yangbiense OX=1000413 GN=EZV62_025112 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 5   RYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAYGAIV 64
           ++DI+KFDG G F +W+ K+KA++ Q+K LKAI  PEKLP  +T E+K+ M   A G I+
Sbjct: 122 KFDIDKFDGSGDFGIWRRKVKALLSQQKILKAIEGPEKLPDSLTVEQKDDMLEMALGTII 181

Query: 65  LNLSDNVLREVIGKETAYGMWQKLEELY 93
           LNLSDNVLRE+  ++TA  +W+KLE LY
Sbjct: 182 LNLSDNVLREINDEKTACDVWKKLESLY 209

[Close]

BLAST of IVF0019768 vs. NCBI nr
Match: KAA0025506.1 (transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa] >TYK00359.1 transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 4.15e-58
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60
          MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY
Sbjct: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60

Query: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 92
          GAIVLNLSDNVLREVIGKETAYGMWQKLEELY
Sbjct: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 92

[Close]

BLAST of IVF0019768 vs. NCBI nr
Match: XP_016899859.1 (PREDICTED: uncharacterized protein LOC107990692 [Cucumis melo])

HSP 1 Score: 119 bits (297), Expect = 3.53e-32
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1   MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60
           +AV RYDIEKFDGKG FTLWKAK+KAIVGQ+K LKA+ DPEKLPK M QE+ ETMENAAY
Sbjct: 45  IAVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETMENAAY 104

Query: 61  GAIVLNLSDNVLREVI 76
            AIVLNLSD+VLRE+I
Sbjct: 105 SAIVLNLSDSVLRELI 120

[Close]

BLAST of IVF0019768 vs. NCBI nr
Match: XP_038890043.1 (uncharacterized protein LOC120079747 [Benincasa hispida])

HSP 1 Score: 108 bits (271), Expect = 2.98e-27
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60
          MA  RY+IEKFD K  F LWK K+K ++GQ+K L AI DP K P+ +T+ EKET+E  A 
Sbjct: 1  MATTRYEIEKFDSKTDFELWKVKIKVVLGQQKALLAITDPAKYPETLTEAEKETIEVNAC 60

Query: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 92
          G IVLN++DNVLR+VI + TAY +W KL E+Y
Sbjct: 61 GTIVLNVTDNVLRQVINQPTAYALWNKLNEIY 92

[Close]

BLAST of IVF0019768 vs. NCBI nr
Match: XP_038889933.1 (uncharacterized protein LOC120079695 [Benincasa hispida])

HSP 1 Score: 106 bits (265), Expect = 1.01e-26
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60
          M   R++IEKFDGK  F LWKAK+KA++GQ+K L AI D  K PK  T  EKE +E  AY
Sbjct: 1  MTTTRFEIEKFDGKTDFELWKAKIKAVLGQQKALLAITDLTKYPKTFTDVEKEIIEVNAY 60

Query: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 92
          G IVLN++DNVLR+++ ++TA+ +W KL E+Y
Sbjct: 61 GTIVLNVTDNVLRQIVDRQTAFDLWNKLNEIY 92

[Close]

BLAST of IVF0019768 vs. NCBI nr
Match: XP_038880370.1 (uncharacterized protein LOC120072018 [Benincasa hispida])

HSP 1 Score: 104 bits (260), Expect = 4.92e-26
Identity = 49/92 (53.26%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60
          MA  RY+IEKFDGK  F L KAK+KA++GQ+K L AI DP K P+ +++ +KET+E  AY
Sbjct: 1  MATIRYEIEKFDGKIDFELQKAKIKAVLGQQKTLLAITDPTKYPETLSEADKETIELNAY 60

Query: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 92
          G I+LN++D++LR+++ + TAY +W KL E+Y
Sbjct: 61 GTIILNVTDSILRQIVDQPTAYALWNKLNEIY 92

The following BLAST results are available for this feature:

BLAST of IVF0019768 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-09	33.70	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of IVF0019768 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQH4	6.9e-44	100.00	Transcription initiation factor TFIID subunit 2-like OS=Cucumis melo var. makuwa...	[more]
A0A1S4DV47	2.1e-24	80.26	uncharacterized protein LOC107990692 OS=Cucumis melo OX=3656 GN=LOC107990692 PE=...	[more]
A0A5A7U6R2	9.0e-20	48.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5C7HB65	2.2e-18	54.55	gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62...	[more]
A0A5C7GXL9	2.2e-18	54.55	Sucrose-phosphate phosphatase OS=Acer yangbiense OX=1000413 GN=EZV62_025112 PE=3...	[more]

BLAST of IVF0019768 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025506.1	4.15e-58	100.00	transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa] ...	[more]
XP_016899859.1	3.53e-32	80.26	PREDICTED: uncharacterized protein LOC107990692 [Cucumis melo]	[more]
XP_038890043.1	2.98e-27	57.61	uncharacterized protein LOC120079747 [Benincasa hispida]	[more]
XP_038889933.1	1.01e-26	55.43	uncharacterized protein LOC120079695 [Benincasa hispida]	[more]
XP_038880370.1	4.92e-26	53.26	uncharacterized protein LOC120072018 [Benincasa hispida]	[more]

BLAST of IVF0019768 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 54..92 e-value: 1.1E-6 score: 28.4
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 7..92
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 7..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019768.1	IVF0019768.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003743	translation initiation factor activity