IVF0019724 (gene) Melon (IVF77) v1

Overview


Name	IVF0019724
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein MICRORCHIDIA 7-like
Location	chr07: 22815703 .. 22816410 (+)
RNA-Seq Expression	IVF0019724
Synteny	IVF0019724

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTTCCCTAATCGACAATCTCAACACCTCTGTAATCGCAGACGCAATCGACGTTAATGGCGGCCAATCCCCCAATACTCTTTCAATCGGCATTAATGGTTCCGCTTCCTGTTTGGTCTTTAGTGATGAGAGAGACGTTTCGTTTTCCGATTCTATTAACCACTCTGATCTAAAGAGGAAGTACGGATGGGAAATTGGAAATCGGAAACGGTAGTTTGAGTGAGGAAGTGGATTCTGTTTCGATTCTGAAGTTGTGTAAAACTCAATCACATTCTGCTTCTTGTTCAAGCGATCCCTGGTTCGGTACTTGAGCCTCTTCCTATCGCATGTTCCCGATGGAGGATTTGGAAGATGATAATGAGGATAATCCGTAGATTAAAAGTTGTAGACAGTTTTGGAAAGCAGGGGATTATGAGGTAAAATTTAATCACGATCCTATTTCGGGTTCAGGTATTAGAACAGCAACTATTTCTCTGTTTTCCAATGCTTCATTTGTTGATCAACAATGTTGTTTAAGAGAATGAAATTTTCAACTTCTATAGATTGATTGATAAATCCAGTTGTAGCTTAGTGATTGATTAAATGTAACAAACTTAATTTTGACATTAATTAAGTTTTATGTTGTGTAGCTGTATAGATCATGTTAGAGTTCATCCAAAATTTCTACATTCAAATGCAAAAAGCCATAAGTGGGCTTTGTGAG

mRNA sequence

ATGGATTCTTCCCTAATCGACAATCTCAACACCTCTGTAATCGCAGACGCAATCGACGTTAATGGCGGCCAATCCCCCAATACTCTTTCAATCGGCATTAATGGTTCCGCTTCCTGTTTGGTCTTTAGTGATGAGAGAGACGTTTCGTTTTCCGATTCTATTAACCACTCTGATCTAAAGAGGAAGTACGGATGGGAAATTGGAAATCGGAAACGGTAGTTTGAGTGAGGAAGTGGATTCTGTTTCGATTCTGAAGTTGTGTAAAACTCAATCACATTCTGCTTCTTGTTCAAGCGATCCCTGGTTCGGTACTTGAGCCTCTTCCTATCGCATGTTCCCGATGGAGGATTTGGAAGATGATAATGAGGATAATCCGTAGATTAAAAGTTGTAGACAGTTTTGGAAAGCAGGGGATTATGAGCTGTATAGATCATGTTAGAGTTCATCCAAAATTTCTACATTCAAATGCAAAAAGCCATAAGTGGGCTTTGTGAG

Coding sequence (CDS)

ATGGATTCTTCCCTAATCGACAATCTCAACACCTCTGTAATCGCAGACGCAATCGACGTTAATGGCGGCCAATCCCCCAATACTCTTTCAATCGGCATTAATGGTTCCGCTTCCTGTTTGGTCTTTAGTGATGAGAGAGACGTTTCGTTTTCCGATTCTATTAACCACTCTGATCTAAAGAGGAAGTACGGATGGGAAATTGGAAATCGGAAACGGTAG

Protein sequence

MDSSLIDNLNTSVIADAIDVNGGQSPNTLSIGINGSASCLVFSDERDVSFSDSINHSDLKRKYGWEIGNRKR

Homology

[Close]

BLAST of IVF0019724 vs. ExPASy TrEMBL
Match: A0A5A7TSG1 (Protein MICRORCHIDIA 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002400 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 44/78 (56.41%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MDSSLIDNLNTSVIADAI-DVNGGQSPNTLSIGIN--------GSASCLVFSDERDVSFS 60
          M SSLIDN N+   ADAI DV+G Q   TLS  IN        GS SCLV SD+ D SFS
Sbjct: 1  MASSLIDNRNS---ADAIDDVSGAQ---TLSTVINASANTADAGSGSCLVISDDSDDSFS 60

Query: 61 DSINHSDLKRKYGWEIGN 70
           S+N S+LKRKY  E GN
Sbjct: 61 HSVNVSNLKRKYVSESGN 72

[Close]

BLAST of IVF0019724 vs. ExPASy TrEMBL
Match: A0A5D3E1L0 (Protein MICRORCHIDIA 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002410 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MDSSLIDNLNTSVIADAI-DVNGGQSPNTLSIGIN--------GSASCLVFSDERDVSFS 60
          M SSLIDN N+   ADAI DV+G Q   TLS  IN        GS SCLV SD+ D SFS
Sbjct: 1  MASSLIDNRNS---ADAIDDVSGAQ---TLSTVINASANTADAGSGSCLVISDDSDDSFS 60

Query: 61 DSINHSDLKRKYGWEIGN 70
           S+N  +LKRKY  E GN
Sbjct: 61 HSVNVPNLKRKYVSESGN 72

[Close]

BLAST of IVF0019724 vs. ExPASy TrEMBL
Match: A0A1S3BYQ8 (protein MICRORCHIDIA 7-like OS=Cucumis melo OX=3656 GN=LOC103494886 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MDSSLIDNLNTSVIADAI-DVNGGQSPNTLSIGIN--------GSASCLVFSDERDVSFS 60
          M SSLIDN N+   ADAI DV+G Q   TLS  IN        GS SCLV SD+ D SFS
Sbjct: 1  MASSLIDNRNS---ADAIDDVSGAQ---TLSTVINASANTADAGSGSCLVISDDSDDSFS 60

Query: 61 DSINHSDLKRKYGWEIGN 70
           S+N  +LKRKY  E GN
Sbjct: 61 HSVNVPNLKRKYVSESGN 72

[Close]

BLAST of IVF0019724 vs. NCBI nr
Match: XP_038889923.1 (protein MICRORCHIDIA 7-like [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 6.36e-14
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1  MDSSLIDNLNTSVIADAIDVNGGQSPNTLSIGINGSASCLVFSDERDVSFSDSINHSDLK 60
          MDSS+IDN   S IAD ID+NG Q+PNTLS GIN         DE D SFSDSIN ++LK
Sbjct: 1  MDSSVIDNHQPSEIADPIDINGRQTPNTLSTGIN---------DEGDDSFSDSINVTNLK 60

Query: 61 RKYGWEIGN 69
          RKYG E GN
Sbjct: 61 RKYGLESGN 60

[Close]

BLAST of IVF0019724 vs. NCBI nr
Match: KAA0044501.1 (protein MICRORCHIDIA 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 5.89e-08
Identity = 44/78 (56.41%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MDSSLIDNLNTSVIADAID-VNGGQSPNTLSIGIN--------GSASCLVFSDERDVSFS 60
          M SSLIDN N+   ADAID V+G Q   TLS  IN        GS SCLV SD+ D SFS
Sbjct: 1  MASSLIDNRNS---ADAIDDVSGAQ---TLSTVINASANTADAGSGSCLVISDDSDDSFS 60

Query: 61 DSINHSDLKRKYGWEIGN 69
           S+N S+LKRKY  E GN
Sbjct: 61 HSVNVSNLKRKYVSESGN 72

[Close]

BLAST of IVF0019724 vs. NCBI nr
Match: TYK29629.1 (protein MICRORCHIDIA 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.80e-07
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MDSSLIDNLNTSVIADAID-VNGGQSPNTLSIGIN--------GSASCLVFSDERDVSFS 60
          M SSLIDN N+   ADAID V+G Q   TLS  IN        GS SCLV SD+ D SFS
Sbjct: 1  MASSLIDNRNS---ADAIDDVSGAQ---TLSTVINASANTADAGSGSCLVISDDSDDSFS 60

Query: 61 DSINHSDLKRKYGWEIGN 69
           S+N  +LKRKY  E GN
Sbjct: 61 HSVNVPNLKRKYVSESGN 72

[Close]

BLAST of IVF0019724 vs. NCBI nr
Match: XP_008454488.1 (PREDICTED: protein MICRORCHIDIA 7-like [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 2.81e-07
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MDSSLIDNLNTSVIADAID-VNGGQSPNTLSIGIN--------GSASCLVFSDERDVSFS 60
          M SSLIDN N+   ADAID V+G Q   TLS  IN        GS SCLV SD+ D SFS
Sbjct: 1  MASSLIDNRNS---ADAIDDVSGAQ---TLSTVINASANTADAGSGSCLVISDDSDDSFS 60

Query: 61 DSINHSDLKRKYGWEIGN 69
           S+N  +LKRKY  E GN
Sbjct: 61 HSVNVPNLKRKYVSESGN 72

[Close]

BLAST of IVF0019724 vs. NCBI nr
Match: KAE8649075.1 (hypothetical protein Csa_014868 [Cucumis sativus])

HSP 1 Score: 50.4 bits (119), Expect = 5.75e-05
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1  MDSSLIDNLNTSVIADAID-VNGGQSPNTLSIGIN------GSASCLVFSDERDVSFSDS 60
          M SSLI N N+   ADA+D VN   S +T+  G        GSASC V SD+ D SFS S
Sbjct: 1  MASSLIHNPNS---ADAVDDVNAAHSLSTVINGSAHTADNAGSASCFVISDDSDHSFSHS 60

Query: 61 INHSD-LKRKYGWEIGN 69
          +N S+  KRKYG E GN
Sbjct: 61 VNASNPKKRKYGSESGN 74

The following BLAST results are available for this feature:

BLAST of IVF0019724 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSG1	2.2e-05	56.41	Protein MICRORCHIDIA 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3E1L0	8.4e-05	55.13	Protein MICRORCHIDIA 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BYQ8	8.4e-05	55.13	protein MICRORCHIDIA 7-like OS=Cucumis melo OX=3656 GN=LOC103494886 PE=3 SV=1	[more]

BLAST of IVF0019724 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889923.1	6.36e-14	62.32	protein MICRORCHIDIA 7-like [Benincasa hispida]	[more]
KAA0044501.1	5.89e-08	56.41	protein MICRORCHIDIA 7-like [Cucumis melo var. makuwa]	[more]
TYK29629.1	2.80e-07	55.13	protein MICRORCHIDIA 7-like [Cucumis melo var. makuwa]	[more]
XP_008454488.1	2.81e-07	55.13	PREDICTED: protein MICRORCHIDIA 7-like [Cucumis melo]	[more]
KAE8649075.1	5.75e-05	50.65	hypothetical protein Csa_014868 [Cucumis sativus]	[more]

BLAST of IVF0019724 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019724.1	IVF0019724.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048584	positive regulation of response to stimulus