IVF0019644 (gene) Melon (IVF77) v1

Overview


Name	IVF0019644
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	transmembrane protein 208 homolog
Location	chr08: 18371757 .. 18373170 (+)
RNA-Seq Expression	IVF0019644
Synteny	IVF0019644

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGGTATGTCTTCTTTCTTTTTAATGTATAACCATTAAATGTCAGTTTCATGCATGTTTTATCTCCATTACATAAAGTATAATCGTTGAGTACAGACCTGATATATTAATTGTTCTGTGACCCAAGTTTAAGGTAAGCGGTTGCTCTGAAACTTGCTAAGAATTGGTATGATATTGTTCACCAAATATCAAATTTCATGAGGAAGCTGAAGGTATTTTTCTTGATCTTCGTTCTAAAATTTAGTCTAAAATGCTTGAAATGGAAGAAACTAGTGATTTGCTTGGCCTAACTCTCATTTTTTCTCGCTCTTCAAAAGCTTAGCACCTTCAAAGTTAGCCCTTTTGTTGGGCCTTTGCTCTACGATCTCTGAGCGCCTTTTTCTTCTTCCTTCATCTTTTAAATACTGGCCATATCAACCTACAACTGTGGCATATTATTCTATTTTAGTTTCCTCTATAGTTATCATTTCCTTTCCGCCTGAATTTCGTGACTAAATTGACTTTCATTTACAGAATTGTAAATTGATATTTAGTATAATTGTCTATTGGCTTAATAACTCTCCATGAGGGCAATATATACAAAAATCACGGTTGTTTGGTCATTTGCCTTACTGGATCTTTCAATTTTCTTTCTTGAACATATTTCAAATTGGATAGTGATATATAAGCAAGCTTGTAGCTTCAAAAGGAATAGGCTTATTGGGTTTTTAAGTTTTCGAGAAAATGGTTCTGCTCCACTTGTTGCTTTGATCAATTGATGTGTTTACTATCACCAATGTGACAAAACAATTCCATGGTAATGTTTTTTGCTACATAATATTGAGTAGTTTTTTGTAGGGTTTTTCAACTCAGTGGAAAATGTGGTTTTTATAATATGGATGAAGTAATTGAAAGGAACATATGACTTTTTAGTGACTATTTTTATTCTTTTAATCGTTTTATGAATCTTGTTCTGTCGCCTGCTTTTTTTTTTTTTTTTTTTTTTTGTGTAAAACTAAGCATCCCTTCTCTCATTTCAACCTTTCTTTTTTATTTAGTAATTGGTGATCTCTTATGTAACAAGCTTTTGCTGTTCATGGTTCTTCCTTGTTTTTTTACCAAAAAAAGTTATGGATTGACTTTAAAAAAGAGGTTGGAATCCAATATGGCTAGCCTTCCATCTGTCAACGATCTCTTGACATTTCAATAATTAATTGAAACATCTTCATGGTTTGTCTTGTTTTTTGTAGCTACATGCATGATATGATCTACATTACAAGTTTTGTGTAAATAATATCAATCCTCTCCGAGAAGTTTTAGTACACCTACCTTGTGGTAAGATCTATTCACTTTCGAAATTGA

mRNA sequence

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATGATATGATCTACATTACAAGTTTTTACACCTACCTTGTGGTAAGATCTATTCACTTTCGAAATTGA

Coding sequence (CDS)

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATGATATGATCTACATTACAAGTTTTTACACCTACCTTGTGGTAAGATCTATTCACTTTCGAAATTGA

Protein sequence

MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSFYTYLVVRSIHFRN

Homology

[Close]

BLAST of IVF0019644 vs. ExPASy TrEMBL
Match: A0A2C9VMI4 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G033000 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 42/57 (73.68%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRS 46
           MAKP+YGDDGELLDGGFDMSTGGICGY+HD+IYITSF            YTYLVVRS
Sbjct: 68  MAKPSYGDDGELLDGGFDMSTGGICGYLHDVIYITSFVQLTSIISEKFWYTYLVVRS 124

[Close]

BLAST of IVF0019644 vs. ExPASy TrEMBL
Match: V4SML5 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v100129242mg PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRSIH 48
           MAKPTY DDGEL+DGGFDMSTGGICGY+HD+IYITSF            YTYLVVR I+
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVVRFIY 126

[Close]

BLAST of IVF0019644 vs. ExPASy TrEMBL
Match: A0A444EU12 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00022482 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-13
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRS 46
           MAKPTY DDGELLDGG+DMSTGGICGY+HD+IYITSF            +TYLVVRS
Sbjct: 68  MAKPTYSDDGELLDGGYDMSTGGICGYLHDLIYITSFVQITSILSGKFWWTYLVVRS 124

[Close]

BLAST of IVF0019644 vs. ExPASy TrEMBL
Match: W9T1Z8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000469 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-13
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRSIH 48
           MAKP Y  DGEL+DGGFDMSTGG+CGY+HD+IYITSF            YTYLVVRS+H
Sbjct: 68  MAKPAYAGDGELIDGGFDMSTGGVCGYLHDVIYITSFVQLASIISGKFWYTYLVVRSLH 126

[Close]

BLAST of IVF0019644 vs. ExPASy TrEMBL
Match: A0A7J8ZB11 (Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_024100 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-13
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRSIH 48
           MAKP Y DDGELLDGGFDMSTGGICGY+HD+IYITSF            YTYLVV SI+
Sbjct: 68  MAKPAYSDDGELLDGGFDMSTGGICGYLHDVIYITSFVQLMSIISDKFWYTYLVVSSIY 126

[Close]

BLAST of IVF0019644 vs. NCBI nr
Match: OAY46856.1 (hypothetical protein MANES_06G033000v8 [Manihot esculenta])

HSP 1 Score: 85.9 bits (211), Expect = 1.12e-19
Identity = 42/57 (73.68%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRS 45
           MAKP+YGDDGELLDGGFDMSTGGICGY+HD+IYITSF            YTYLVVRS
Sbjct: 68  MAKPSYGDDGELLDGGFDMSTGGICGYLHDVIYITSFVQLTSIISEKFWYTYLVVRS 124

[Close]

BLAST of IVF0019644 vs. NCBI nr
Match: MBA0709028.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 82.4 bits (202), Expect = 1.76e-18
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRSIH 47
           MAKP Y DDGELLDGGFDMSTGGICGY+HD+IYITSF            YTYLVV SI+
Sbjct: 68  MAKPAYSDDGELLDGGFDMSTGGICGYLHDVIYITSFVQLMSIISDKFWYTYLVVSSIY 126

[Close]

BLAST of IVF0019644 vs. NCBI nr
Match: KAA0043099.1 (transmembrane protein 208-like protein [Cucumis melo var. makuwa] >TYJ96389.1 transmembrane protein 208-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 1.89e-18
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1  MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRS 45
          MAKPTYGDDGELLDGGFDMST GICGYMHD+IYITSF            YTYLV+ +
Sbjct: 1  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYLVIPA 57

[Close]

BLAST of IVF0019644 vs. NCBI nr
Match: RWW13789.1 (hypothetical protein GW17_00022482 [Ensete ventricosum] >RWW58202.1 hypothetical protein BHE74_00034966 [Ensete ventricosum])

HSP 1 Score: 82.4 bits (202), Expect = 2.27e-18
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRS 45
           MAKPTY DDGELLDGG+DMSTGGICGY+HD+IYITSF            +TYLVVRS
Sbjct: 68  MAKPTYSDDGELLDGGYDMSTGGICGYLHDLIYITSFVQITSILSGKFWWTYLVVRS 124

[Close]

BLAST of IVF0019644 vs. NCBI nr
Match: ESR41907.1 (hypothetical protein CICLE_v100129242mg [Citrus clementina])

HSP 1 Score: 82.8 bits (203), Expect = 3.21e-18
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVVRSIH 47
           MAKPTY DDGEL+DGGFDMSTGGICGY+HD+IYITSF            YTYLVVR I+
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVVRFIY 126

[Close]

BLAST of IVF0019644 vs. TAIR 10
Match: AT2G23940.1 (Protein of unknown function (DUF788) )

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-13
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVV 44
           MAKP+  DDGEL+DGGFDM+TGGICGY+HD+IYIT F            YTYLV+
Sbjct: 68  MAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYLVI 122

[Close]

BLAST of IVF0019644 vs. TAIR 10
Match: AT4G30500.1 (Protein of unknown function (DUF788) )

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-11
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHDMIYITSF------------YTYLVV 44
           MAKP+  D GELLDGGFDMST G+CGY+HD++YIT F            Y YLV+
Sbjct: 68  MAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYLVI 122

The following BLAST results are available for this feature:

BLAST of IVF0019644 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019644 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2C9VMI4	5.3e-14	73.68	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G033000 PE=3 SV=...	[more]
V4SML5	4.5e-13	69.49	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v100129242mg PE=3...	[more]
A0A444EU12	5.8e-13	70.18	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00022482 PE=3 SV=1	[more]
W9T1Z8	5.8e-13	66.10	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000469 PE=3 SV=1	[more]
A0A7J8ZB11	5.8e-13	69.49	Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_024100 PE=3 SV=1	[more]

BLAST of IVF0019644 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY46856.1	1.12e-19	73.68	hypothetical protein MANES_06G033000v8 [Manihot esculenta]	[more]
MBA0709028.1	1.76e-18	69.49	hypothetical protein [Gossypium laxum]	[more]
KAA0043099.1	1.89e-18	70.18	transmembrane protein 208-like protein [Cucumis melo var. makuwa] >TYJ96389.1 tr...	[more]
RWW13789.1	2.27e-18	70.18	hypothetical protein GW17_00022482 [Ensete ventricosum] >RWW58202.1 hypothetical...	[more]
ESR41907.1	3.21e-18	69.49	hypothetical protein CICLE_v100129242mg [Citrus clementina]	[more]

BLAST of IVF0019644 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23940.1	2.6e-13	61.82	Protein of unknown function (DUF788)	[more]
AT4G30500.1	4.1e-11	56.36	Protein of unknown function (DUF788)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	SRP-independent targeting protein 2/TMEM208	PFAM	PF05620	TMEM208_SND2	coord: 1..43 e-value: 1.1E-12 score: 48.1
IPR008506	SRP-independent targeting protein 2/TMEM208	PANTHER	PTHR13505	TRANSMEMBRANE PROTEIN 208	coord: 1..43
None	No IPR available	PANTHER	PTHR13505:SF8	BNAA01G06570D PROTEIN	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019644.2	IVF0019644.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006624	vacuolar protein processing
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane