IVF0019604 (gene) Melon (IVF77) v1

Overview


Name	IVF0019604
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr10: 1994158 .. 1994978 (+)
RNA-Seq Expression	IVF0019604
Synteny	IVF0019604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGAGATCGAAACAGAGAGAGGGTTTGAAATGAGCGGAGAGCCGGATAACGGAGGGTCGAAGGCGGCGAAGATCGTGGGGGCGGTGGTGGGGTTTGCGACTTTCATCGGGTGTGTGGCGAGCATGTTGTCGTCGGCGGACTCTGAAACTGCCGGTGATAGGAAAATGATGAAGGCTCCGGGAAAGCATGGGGAGGAAATGTACAGAGATGAGTTTGAGAAGGATCCTTCCAAGTATTCAGAGACTTGAGGAAGAAATGAGATCACTATAAACATCTGAAGATATTAAATTAAAGCTCCTAATAATAATAAATTAATTAGTTTTGGTAATTTTGTGGGGTTTTTGTTTTCGTTGTTGTTGATTTTCTGCTTTTATGAATGTTGTGTGATGATGAAGACACAGTACTGTGAGTGAGTTCTTATGGGGAGTTTCAAAGTGTGGAATGAAATGGGAGCATCGTGCAAGTTCGTAAGTCTTTTTGTCATGTAAAATATTAACATCATCGTCCCTCGTTTAAAAGATGATTGTTCGGTATTCCATTTTCTTTCACACCTGTCATTTTCTCTCAAGGTTGTGCGATCCTTCTTTCAAACTCGTCTATCAAGCTTCAACTTTCGACTCTGCTTTGTTTTATCGTTGCTTCGTCTCTCAACTCCGATTTAGACTCTCTCACTCGGCTAAGGCATTTTCTCTTAACTTCGTTTGAACATTTGTGTATTTTTTTGGTTCCTTGAAGCATATGGTCTCTAGATTTCTCTTAACCAAGTTTTGTATTTTATTTCATTTCGAATAAACTGTGTTACACATGCTGACATAAACG

mRNA sequence

AACAGAGATCGAAACAGAGAGAGGGTTTGAAATGAGCGGAGAGCCGGATAACGGAGGGTCGAAGGCGGCGAAGATCGTGGGGGCGGTGGTGGGGTTTGCGACTTTCATCGGGTGTGTGGCGAGCATGTTGTCGTCGGCGGACTCTGAAACTGCCGGTGATAGGAAAATGATGAAGGCTCCGGGAAAGCATGGGGAGGAAATGTACAGAGATGAGTTTGAGAAGGATCCTTCCAAGTATTCAGAGACTTGAGGAAGAAATGAGATCACTATAAACATCTGAAGATATTAAATTAAAGCTCCTAATAATAATAAATTAATTAGTTTTGGTAATTTTGTGGGGTTTTTGTTTTCGTTGTTGTTGATTTTCTGCTTTTATGAATGTTGTGTGATGATGAAGACACAGTACTGTGAGTGAGTTCTTATGGGGAGTTTCAAAGTGTGGAATGAAATGGGAGCATCGTGCAAGTTCGTAAGTCTTTTTGTCATGTAAAATATTAACATCATCGTCCCTCGTTTAAAAGATGATTGTTCGGTATTCCATTTTCTTTCACACCTGTCATTTTCTCTCAAGGTTGTGCGATCCTTCTTTCAAACTCGTCTATCAAGCTTCAACTTTCGACTCTGCTTTGTTTTATCGTTGCTTCGTCTCTCAACTCCGATTTAGACTCTCTCACTCGGCTAAGGCATTTTCTCTTAACTTCGTTTGAACATTTGTGTATTTTTTTGGTTCCTTGAAGCATATGGTCTCTAGATTTCTCTTAACCAAGTTTTGTATTTTATTTCATTTCGAATAAACTGTGTTACACATGCTGACATAAACG

Coding sequence (CDS)

ATGAGCGGAGAGCCGGATAACGGAGGGTCGAAGGCGGCGAAGATCGTGGGGGCGGTGGTGGGGTTTGCGACTTTCATCGGGTGTGTGGCGAGCATGTTGTCGTCGGCGGACTCTGAAACTGCCGGTGATAGGAAAATGATGAAGGCTCCGGGAAAGCATGGGGAGGAAATGTACAGAGATGAGTTTGAGAAGGATCCTTCCAAGTATTCAGAGACTTGA

Protein sequence

MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRDEFEKDPSKYSET

Homology

[Close]

BLAST of IVF0019604 vs. ExPASy TrEMBL
Match: A0A5A7SYF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00210 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.9e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60
          MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60

Query: 61 EFEKDPSKY 70
          EFEKDPSKY
Sbjct: 61 EFEKDPSKY 69

[Close]

BLAST of IVF0019604 vs. ExPASy TrEMBL
Match: A0A0A0KW91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.6e-26
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60
          MSGEPDNGGSKAAKIVGAVVGFATFIGCVASM  SADSETAGDR+ MKAPGKHGEEMYRD
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMF-SADSETAGDRRTMKAPGKHGEEMYRD 60

Query: 61 EFEKDPSKY 70
          EFEKDPSKY
Sbjct: 61 EFEKDPSKY 68

[Close]

BLAST of IVF0019604 vs. NCBI nr
Match: KAA0034481.1 (hypothetical protein E6C27_scaffold65G004930 [Cucumis melo var. makuwa] >TYK09035.1 hypothetical protein E5676_scaffold475G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (343), Expect = 3.26e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60
          MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60

Query: 61 EFEKDPSKY 69
          EFEKDPSKY
Sbjct: 61 EFEKDPSKY 69

[Close]

BLAST of IVF0019604 vs. NCBI nr
Match: KAG6574034.1 (hypothetical protein SDJN03_27921, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 2.24e-22
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60
          MSGEP++GGSKAAKIVGAVVGFATFIGCVAS+LS A +E  GD KMMKAPG+ G+ + R 
Sbjct: 1  MSGEPESGGSKAAKIVGAVVGFATFIGCVASVLS-AGAEAMGDPKMMKAPGRRGQMIERG 60

Query: 61 EFEKDPSKY 69
          +FE++PS Y
Sbjct: 61 KFEENPSGY 68

[Close]

BLAST of IVF0019604 vs. NCBI nr
Match: KAG6651850.1 (hypothetical protein CIPAW_06G141700 [Carya illinoinensis])

HSP 1 Score: 49.7 bits (117), Expect = 1.40e-05
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 10 SKAAKIVGAVV-GFATFIGCVASMLSSADSETAG---DRKMMKAPGKHGEEMYRDEFEKD 69
          +KAAK+ GAV  G     G VA +LS+  SE  G   D+K MKAPG+ G  MYRD+F KD
Sbjct: 21 AKAAKVAGAVAAGVGVLAGAVA-LLSTVGSEQPGAIADKKTMKAPGRQGTRMYRDDFTKD 80

[Close]

BLAST of IVF0019604 vs. NCBI nr
Match: KAG7976151.1 (hypothetical protein I3843_06G135200 [Carya illinoinensis])

HSP 1 Score: 49.7 bits (117), Expect = 1.40e-05
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 10 SKAAKIVGAVV-GFATFIGCVASMLSSADSETAG---DRKMMKAPGKHGEEMYRDEFEKD 69
          +KAAK+ GAV  G     G VA +LS+  SE  G   D+K MKAPG+ G  MYRD+F KD
Sbjct: 21 AKAAKVAGAVAAGVGVLAGAVA-LLSTVGSEQPGAIADKKTMKAPGRQGTRMYRDDFTKD 80

[Close]

BLAST of IVF0019604 vs. NCBI nr
Match: KAG2703561.1 (hypothetical protein I3760_06G144000 [Carya illinoinensis] >KAG6709632.1 hypothetical protein I3842_06G142400 [Carya illinoinensis])

HSP 1 Score: 48.5 bits (114), Expect = 3.95e-05
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 10 SKAAKIVGAVV-GFATFIGCVASMLSSADSETAG---DRKMMKAPGKHGEEMYRDEFEKD 69
          +KAAK+ GAV  G     G VA +LS   SE  G   D+K MKAPG+ G  MYRD+F KD
Sbjct: 21 AKAAKVAGAVAAGVGVLAGAVA-LLSIVGSEQPGAIADKKTMKAPGRQGTRMYRDDFTKD 80

The following BLAST results are available for this feature:

BLAST of IVF0019604 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYF6	2.9e-29	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KW91	6.6e-26	94.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1	[more]

BLAST of IVF0019604 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034481.1	3.26e-40	100.00	hypothetical protein E6C27_scaffold65G004930 [Cucumis melo var. makuwa] >TYK0903...	[more]
KAG6574034.1	2.24e-22	71.01	hypothetical protein SDJN03_27921, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6651850.1	1.40e-05	50.00	hypothetical protein CIPAW_06G141700 [Carya illinoinensis]	[more]
KAG7976151.1	1.40e-05	50.00	hypothetical protein I3843_06G135200 [Carya illinoinensis]	[more]
KAG2703561.1	3.95e-05	50.00	hypothetical protein I3760_06G144000 [Carya illinoinensis] >KAG6709632.1 hypothe...	[more]

BLAST of IVF0019604 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019604.2	IVF0019604.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane