IVF0019572 (gene) Melon (IVF77) v1

Overview


Name	IVF0019572
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RING-H2 finger protein ATL39-like
Location	chr12: 1819432 .. 1819953 (+)
RNA-Seq Expression	IVF0019572
Synteny	IVF0019572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTTCACCGCCTCCACCTCCGGACGACTTACCCGTCGGCTTCCTCTCAGCTCTAGATCTCGACTTCCTAAATGTCGCAGGACTCTCCGCTCTGGCTATGATGTTCATCTACTTCATTTTCACCTGCTACGAACGGAAATTCTGGAACCGAAACGGCGATATCGAAGGCGGACAGCTGCCATCGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCAAGAAGACGGCCGTCTTCGAGGGCAGTAATATCGACGAGGCTGTTTCAGTACGGAGTAGGAGGAGGGGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACTGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCAATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCACCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

mRNA sequence

ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTTCACCGCCTCCACCTCCGGACGACTTACCCGTCGGCTTCCTCTCAGCTCTAGATCTCGACTTCCTAAATGTCGCAGGACTCTCCGCTCTGGCTATGATGTTCATCTACTTCATTTTCACCTGCTACGAACGGAAATTCTGGAACCGAAACGGCGATATCGAAGGCGGACAGCTGCCATCGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCAAGAAGACGGCCGTCTTCGAGGGCAGTAATATCGACGAGGCTGTTTCAGTACGGAGTAGGAGGAGGGGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACTGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCAATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCACCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

Coding sequence (CDS)

ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTTCACCGCCTCCACCTCCGGACGACTTACCCGTCGGCTTCCTCTCAGCTCTAGATCTCGACTTCCTAAATGTCGCAGGACTCTCCGCTCTGGCTATGATGTTCATCTACTTCATTTTCACCTGCTACGAACGGAAATTCTGGAACCGAAACGGCGATATCGAAGGCGGACAGCTGCCATCGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCAAGAAGACGGCCGTCTTCGAGGGCAGTAATATCGACGAGGCTGTTTCAGTACGGAGTAGGAGGAGGGGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACTGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCAATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCACCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

Protein sequence

MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS

Homology

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BLAST of IVF0019572 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 54/166 (32.53%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 15  PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIF--TCYERKFWNRNGDIEGGQLP 74
           PPPPP   P   LS L    + V G   L +  ++F++     +R+              
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI----------SAA 85

Query: 75  SVTMDESPASETGDSSRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 134
           SVT  ++   E  D +  R  S                A+ S  +  +  G G+I    +
Sbjct: 86  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTE 145

Query: 135 CSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPV 164
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 146 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

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BLAST of IVF0019572 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 53/160 (33.12%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 15  PPPPP----DDLPVGFLSALDLDFLNVAGL--SALAMMFIYFIFTCYERKFWNRNGDIEG 74
           PPPPP    DD      S+     + + G+  SAL ++  Y + +    K+ +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 75  GQLPSVTMDESPASETGDSSRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 134
               S T++ +   E   SS +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  ----SETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-DGSDCSVC 154

Query: 135 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 162
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of IVF0019572 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 104 QYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPV 163
           +Y  G G +    DCS+CL EF++GE  R+LP+C H FH+ CID WL +  NCP+CR+ +
Sbjct: 144 KYRRGDGFV-HTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANI 202

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BLAST of IVF0019572 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-13
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 117 DCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYV 166
           DCSICL EF E E  R+LPKC H FH  CID+WL +  NCP+CR+ + V
Sbjct: 154 DCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of IVF0019572 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.7e-13
Identity = 53/171 (30.99%), Postives = 79/171 (46.20%), Query Frame = 0


Query: 5   TAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNG 64
           T  + T+ P  P PP   P    SALD        +  +A+ F+ F F+ Y R F + + 
Sbjct: 25  TVQNVTSSPLTPTPPPQPP----SALDSTMALTIFILLVALFFMGF-FSVYFRHFADSSS 84

Query: 65  DIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRL-FQYGVGGGVI----------- 124
                   +V +   P + +   S RR S+  V+S    F+ G+    +           
Sbjct: 85  S-------TVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKA 144

Query: 125 --GKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 162
              +N DC ICL +F EGE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 145 AKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of IVF0019572 vs. ExPASy TrEMBL
Match: A0A5D3BEF0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002260 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.0e-97
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 174
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of IVF0019572 vs. ExPASy TrEMBL
Match: A0A1S3C5T1 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.0e-97
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 174
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of IVF0019572 vs. ExPASy TrEMBL
Match: A0A5A7VKM2 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00570 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 2.9e-96
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LPS TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 174
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of IVF0019572 vs. ExPASy TrEMBL
Match: A0A0A0M0H1 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 7.7e-89
Identity = 157/173 (90.75%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LP+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 174
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of IVF0019572 vs. ExPASy TrEMBL
Match: A0A6J1I603 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.2e-50
Identity = 100/158 (63.29%), Postives = 118/158 (74.68%), Query Frame = 0


Query: 16  PPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLPSVT 75
           PPPP +L V  LS +DLDFLN AGL  LA+  +YFI+T YE K+WNR+ DIEGG+     
Sbjct: 3   PPPPPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGR----- 62

Query: 76  MDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLP 135
              +  +  G S   R  + AVISTRLFQYG   G+ GKNADCSICLDEF EGEICRMLP
Sbjct: 63  --SAATASVGSSGEDRRWATAVISTRLFQYG-ERGMEGKNADCSICLDEFVEGEICRMLP 122

Query: 136 KCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 174
           KCKHVFHRFCIDQWLPNER+CP+CRSPV+VR +++  S
Sbjct: 123 KCKHVFHRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of IVF0019572 vs. NCBI nr
Match: XP_008457570.2 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 363 bits (932), Expect = 7.16e-127
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of IVF0019572 vs. NCBI nr
Match: KAA0067737.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 359 bits (922), Expect = 2.40e-125
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LPS TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of IVF0019572 vs. NCBI nr
Match: XP_004151031.2 (RING-H2 finger protein ATL39 [Cucumis sativus])

HSP 1 Score: 335 bits (858), Expect = 1.38e-115
Identity = 157/173 (90.75%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LP+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of IVF0019572 vs. NCBI nr
Match: KAE8653247.1 (hypothetical protein Csa_019633 [Cucumis sativus])

HSP 1 Score: 335 bits (858), Expect = 1.40e-113
Identity = 157/173 (90.75%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 134 MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 193

Query: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LP+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 194 NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 253

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 254 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 306

[Close]

BLAST of IVF0019572 vs. NCBI nr
Match: XP_038895799.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 261 bits (668), Expect = 8.66e-87
Identity = 127/163 (77.91%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 12  MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 71
           MP PPP P +L V  LS LDLDFLN AGLSALA+M +YFIFTCYERK+WNRNGDIEGG+ 
Sbjct: 1   MPPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRP 60

Query: 72  PSV-TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEI 131
           PS  T+ E  ASE GDSS RR +S AVIST+LFQYG GG ++GKNADCSICLDEF+EGEI
Sbjct: 61  PSSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYGEGG-LMGKNADCSICLDEFSEGEI 120

Query: 132 CRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CRMLPKCKHVFHRFCIDQWLPNER+CPVCRSPV+VR+VYS PS
Sbjct: 121 CRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 162

[Close]

BLAST of IVF0019572 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-17
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 97  VISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNC 156
           + S ++ QY    GV+ +  DCS+CL EF E E  R+LPKCKH FH +CID WL +  NC
Sbjct: 197 ISSIKVCQYSKKDGVV-EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNC 256

Query: 157 PVCRSPV 164
           P+CR+P+
Sbjct: 257 PLCRAPI 262

[Close]

BLAST of IVF0019572 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 7.8e-17
Identity = 54/166 (32.53%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 15  PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIF--TCYERKFWNRNGDIEGGQLP 74
           PPPPP   P   LS L    + V G   L +  ++F++     +R+              
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI----------SAA 85

Query: 75  SVTMDESPASETGDSSRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 134
           SVT  ++   E  D +  R  S                A+ S  +  +  G G+I    +
Sbjct: 86  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTE 145

Query: 135 CSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPV 164
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 146 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of IVF0019572 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 53/160 (33.12%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 15  PPPPP----DDLPVGFLSALDLDFLNVAGL--SALAMMFIYFIFTCYERKFWNRNGDIEG 74
           PPPPP    DD      S+     + + G+  SAL ++  Y + +    K+ +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 75  GQLPSVTMDESPASETGDSSRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 134
               S T++ +   E   SS +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  ----SETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-DGSDCSVC 154

Query: 135 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 162
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of IVF0019572 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 117 DCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYV 166
           DCSICL EF E E  R+LPKC H FH  CID+WL +  NCP+CR+ + V
Sbjct: 154 DCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of IVF0019572 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 4.7e-14
Identity = 53/171 (30.99%), Postives = 79/171 (46.20%), Query Frame = 0


Query: 5   TAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNG 64
           T  + T+ P  P PP   P    SALD        +  +A+ F+ F F+ Y R F + + 
Sbjct: 25  TVQNVTSSPLTPTPPPQPP----SALDSTMALTIFILLVALFFMGF-FSVYFRHFADSSS 84

Query: 65  DIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRL-FQYGVGGGVI----------- 124
                   +V +   P + +   S RR S+  V+S    F+ G+    +           
Sbjct: 85  S-------TVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKA 144

Query: 125 --GKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 162
              +N DC ICL +F EGE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 145 AKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

The following BLAST results are available for this feature:

BLAST of IVF0019572 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	1.1e-15	32.53	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9LF64	1.8e-13	33.13	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q7XLY8	3.0e-13	48.33	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
P0C041	3.9e-13	59.18	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q9SJJ7	6.7e-13	30.99	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]

BLAST of IVF0019572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BEF0	2.0e-97	100.00	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C5T1	2.0e-97	100.00	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 S...	[more]
A0A5A7VKM2	2.9e-96	98.84	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0M0H1	7.7e-89	90.75	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE...	[more]
A0A6J1I603	4.2e-50	63.29	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 P...	[more]

BLAST of IVF0019572 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457570.2	7.16e-127	100.00	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 ...	[more]
KAA0067737.1	2.40e-125	98.84	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
XP_004151031.2	1.38e-115	90.75	RING-H2 finger protein ATL39 [Cucumis sativus]	[more]
KAE8653247.1	1.40e-113	90.75	hypothetical protein Csa_019633 [Cucumis sativus]	[more]
XP_038895799.1	8.66e-87	77.91	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]

BLAST of IVF0019572 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33565.1	1.6e-17	50.75	RING/U-box superfamily protein	[more]
AT5G10380.1	7.8e-17	32.53	RING/U-box superfamily protein	[more]
AT5G17600.1	1.2e-14	33.13	RING/U-box superfamily protein	[more]
AT4G17905.1	2.8e-14	59.18	RING/U-box superfamily protein	[more]
AT2G27940.1	4.7e-14	30.99	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..159 e-value: 1.0E-7 score: 41.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 117..160 e-value: 4.5E-13 score: 49.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..160 score: 12.976127
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 77..164 e-value: 2.4E-20 score: 74.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 11..165
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 118..160 e-value: 1.97639E-16 score: 67.2517
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 112..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019572.2	IVF0019572.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane