IVF0019498 (gene) Melon (IVF77) v1

Overview


Name	IVF0019498
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr07: 16027732 .. 16027995 (+)
RNA-Seq Expression	IVF0019498
Synteny	IVF0019498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAGTAGAAGTCGTTTTGAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAACTACCTCCAAACAAGCCTACCGCGAGACCCGAGAACTCAAGCGTCAACTCTGTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCTAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCGTTTTGAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAACTACCTCCAAACAAGCCTACCGCGAGACCCGAGAACTCAAGCGTCAACTCTGTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCTAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCGTTTTGAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAACTACCTCCAAACAAGCCTACCGCGAGACCCGAGAACTCAAGCGTCAACTCTGTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCTAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAG

Protein sequence

MTLVEVVLKGPKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLTVTRSGGRKA

Homology

[Close]

BLAST of IVF0019498 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 69
           G KRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 77
           E NP RR
Sbjct: 136 E-NPERR 141

[Close]

BLAST of IVF0019498 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.5e-24
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 78
           P++ KL P KP A PEN SVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0019498 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.5e-24
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 78
           P++ KL P KP A PEN SVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0019498 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 78
           P++ KL P +PTARPEN SV S LPS+EKSRAI+YSNIQ LIGCSNIREFIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0019498 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.1e-22
Identity = 57/69 (82.61%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 78
           P++ KL P +P A PEN SVNS LPSREKSR ISYSNIQTLIGCSNIREFIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0019498 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 1.97e-32
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 69
           G KRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 76
           EN P RR
Sbjct: 136 EN-PERR 141

[Close]

BLAST of IVF0019498 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 1.06e-31
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 78
           P++ KL P KP A PEN SVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0019498 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 2.70e-30
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 78
           P++ KL P KP A PEN SVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0019498 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 5.56e-30
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 78
           P++ KL P +PTARPEN SV S LPS+EKSRAI+YSNIQ LIGCSNIREFIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0019498 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 2.85e-29
Identity = 57/69 (82.61%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 78
           P++ KL P +P A PEN SVNS LPSREKSR ISYSNIQTLIGCSNIREFIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

The following BLAST results are available for this feature:

BLAST of IVF0019498 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMJ9	3.0e-25	95.52	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TNL7	7.5e-24	88.41	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ULW2	7.5e-24	88.41	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UGC7	2.4e-22	82.61	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SQ80	4.1e-22	82.61	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0019498 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057143.1	1.97e-32	95.52	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054655.1	1.06e-31	88.41	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0043181.1	2.70e-30	88.41	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054224.1	5.56e-30	82.61	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0032698.1	2.85e-29	82.61	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0019498 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019498.1	IVF0019498.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane