IVF0019424 (gene) Melon (IVF77) v1

Overview


Name	IVF0019424
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr06: 7292334 .. 7292771 (+)
RNA-Seq Expression	IVF0019424
Synteny	IVF0019424

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGATGTACCATTTCAAGTTTTAGAAAAGATTAATGTTAATACCCATAAAGTTCATCTTCGAGGTAAGTATCATGTGCATGCTAAATTTAATATTGTTGACTTATCCTTGTTTGATGAAGATAACTTTGATTCGAGGACGAATCCTTTCGAAGAGCGGGAAAATGGTAAGATGTTGAATAACAAAGAAGAAAATGAGACTCAACAAGCTCACACCAACTCAAATGAAGAGGAAAATGAAGCACATTCTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATCAAGAGGCAATCATTATGGCTCAAGGCTCAACGGCAAAAGCTAGAGCTAAAAGACTTCAGGATGGATTAAGTGCTTGTTTACAAGCTAAATTTTTATCTTTAATAAAGAGTTTGAACTTTAAAAGGCACTTGGACACCCAAGGGTCGTAA

mRNA sequence

ATGAGAGATGTACCATTTCAAGTTTTAGAAAAGATTAATGTTAATACCCATAAAGTTCATCTTCGAGGTAAGTATCATGTGCATGCTAAATTTAATATTGTTGACTTATCCTTGTTTGATGAAGATAACTTTGATTCGAGGACGAATCCTTTCGAAGAGCGGGAAAATGGTAAGATGTTGAATAACAAAGAAGAAAATGAGACTCAACAAGCTCACACCAACTCAAATGAAGAGGAAAATGAAGCACATTCTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATCAAGAGGCAATCATTATGGCTCAAGGCTCAACGGCAAAAGCTAGAGCTAAAAGACTTCAGGATGGATTAAGTGCTTGTTTACAAGCTAAATTTTTATCTTTAATAAAGAGTTTGAACTTTAAAAGGCACTTGGACACCCAAGGGTCGTAA

Coding sequence (CDS)

ATGAGAGATGTACCATTTCAAGTTTTAGAAAAGATTAATGTTAATACCCATAAAGTTCATCTTCGAGGTAAGTATCATGTGCATGCTAAATTTAATATTGTTGACTTATCCTTGTTTGATGAAGATAACTTTGATTCGAGGACGAATCCTTTCGAAGAGCGGGAAAATGGTAAGATGTTGAATAACAAAGAAGAAAATGAGACTCAACAAGCTCACACCAACTCAAATGAAGAGGAAAATGAAGCACATTCTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATCAAGAGGCAATCATTATGGCTCAAGGCTCAACGGCAAAAGCTAGAGCTAAAAGACTTCAGGATGGATTAAGTGCTTGTTTACAAGCTAAATTTTTATCTTTAATAAAGAGTTTGAACTTTAAAAGGCACTTGGACACCCAAGGGTCGTAA

Protein sequence

MRDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQDGLSACLQAKFLSLIKSLNFKRHLDTQGS

Homology

[Close]

BLAST of IVF0019424 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 77/139 (55.40%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 2   RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLN 61
           RD PFQVLEK+N N +KV LRG                   NFDSRTNPFEE EN KMLN
Sbjct: 331 RDGPFQVLEKVNDNAYKVDLRG-------------------NFDSRTNPFEEGENDKMLN 390

Query: 62  NKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQDGLSA 121
           N       +A+TNSN+EENE H+ NSW N Q QTNQE IIM QGS  KARAKR +D L+A
Sbjct: 391 N-------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNA 443

Query: 122 CLQAKFLSLIKSLNFKRHL 141
           CLQA+F    K L  +  L
Sbjct: 451 CLQARFSVFNKELELQESL 443

[Close]

BLAST of IVF0019424 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 77/139 (55.40%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 2   RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLN 61
           RD PFQVLEK+N N +KV LRG                   NFDSRTNPFEE EN KMLN
Sbjct: 367 RDGPFQVLEKVNDNAYKVDLRG-------------------NFDSRTNPFEEGENDKMLN 426

Query: 62  NKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQDGLSA 121
           N       +A+TNSN+EENE H+ NSW N Q QTNQE IIM QGS  KARAKR +D L+A
Sbjct: 427 N-------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNA 479

Query: 122 CLQAKFLSLIKSLNFKRHL 141
           CLQA+F    K L  +  L
Sbjct: 487 CLQARFSVFNKELELQESL 479

[Close]

BLAST of IVF0019424 vs. ExPASy TrEMBL
Match: A0A5D3D7R5 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00380 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 72/117 (61.54%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 7   QVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEEN 66
           QV EKIN N +KV LRG                   NFD RTNPFEE EN  MLN+    
Sbjct: 402 QVSEKINDNAYKVDLRG-------------------NFDLRTNPFEEGENDTMLNS---- 461

Query: 67  ETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQDGLSACL 124
              +AHTNSNEEENE H+GNSWEN QSQTNQEAIIM QGS  KARAKRLQD L+ACL
Sbjct: 462 ---EAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACL 492

[Close]

BLAST of IVF0019424 vs. ExPASy TrEMBL
Match: A0A5D3B744 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001050 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 9.2e-19
Identity = 66/118 (55.93%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 3   DVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNN 62
           D PFQVLEKIN N +KV LRG                   NFDSRTN F+E E   MLN+
Sbjct: 747 DEPFQVLEKINDNAYKVDLRG-------------------NFDSRTNLFKEGEKDNMLNS 806

Query: 63  KEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQDGLS 121
           +EENET              H+GNSWEN QSQTNQEAIIM QGS  KARAKRLQDGL+
Sbjct: 807 EEENET--------------HAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLN 831

[Close]

BLAST of IVF0019424 vs. ExPASy TrEMBL
Match: A0A5D3CTJ1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 55/75 (73.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 43  NFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIM 102
           NFDS TNPF+E EN KMLNN       +AHTNSNE+ENEAH GNSWENFQ QTNQEA IM
Sbjct: 45  NFDSWTNPFKEGENDKMLNN-------EAHTNSNEKENEAHVGNSWENFQRQTNQEA-IM 104

Query: 103 AQGSTAKARAKRLQD 118
           AQ S  KARAK LQD
Sbjct: 105 AQCSMTKARAKILQD 111

[Close]

BLAST of IVF0019424 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (314), Expect = 8.87e-31
Identity = 77/139 (55.40%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 2   RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLN 61
           RD PFQVLEK+N N +KV LRG                   NFDSRTNPFEE EN KMLN
Sbjct: 331 RDGPFQVLEKVNDNAYKVDLRG-------------------NFDSRTNPFEEGENDKMLN 390

Query: 62  NKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQDGLSA 121
           N       +A+TNSN+EENE H+ NSW N Q QTNQE IIM QGS  KARAKR +D L+A
Sbjct: 391 N-------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNA 443

Query: 122 CLQAKFLSLIKSLNFKRHL 140
           CLQA+F    K L  +  L
Sbjct: 451 CLQARFSVFNKELELQESL 443

[Close]

BLAST of IVF0019424 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (314), Expect = 1.30e-30
Identity = 77/139 (55.40%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 2   RDVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLN 61
           RD PFQVLEK+N N +KV LRG                   NFDSRTNPFEE EN KMLN
Sbjct: 367 RDGPFQVLEKVNDNAYKVDLRG-------------------NFDSRTNPFEEGENDKMLN 426

Query: 62  NKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQDGLSA 121
           N       +A+TNSN+EENE H+ NSW N Q QTNQE IIM QGS  KARAKR +D L+A
Sbjct: 427 N-------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNA 479

Query: 122 CLQAKFLSLIKSLNFKRHL 140
           CLQA+F    K L  +  L
Sbjct: 487 CLQARFSVFNKELELQESL 479

[Close]

BLAST of IVF0019424 vs. NCBI nr
Match: TYK19543.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 3.30e-27
Identity = 72/117 (61.54%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 7   QVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEEN 66
           QV EKIN N +KV LRG                   NFD RTNPFEE EN  MLN+    
Sbjct: 402 QVSEKINDNAYKVDLRG-------------------NFDLRTNPFEEGENDTMLNS---- 461

Query: 67  ETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQDGLSACL 123
              +AHTNSNEEENE H+GNSWEN QSQTNQEAIIM QGS  KARAKRLQD L+ACL
Sbjct: 462 ---EAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACL 492

[Close]

BLAST of IVF0019424 vs. NCBI nr
Match: KAA0036753.1 (hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820.1 hypothetical protein E5676_scaffold110G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 2.72e-22
Identity = 66/118 (55.93%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 3   DVPFQVLEKINVNTHKVHLRGKYHVHAKFNIVDLSLFDEDNFDSRTNPFEERENGKMLNN 62
           D PFQVLEKIN N +KV LRG                   NFDSRTN F+E E   MLN+
Sbjct: 747 DEPFQVLEKINDNAYKVDLRG-------------------NFDSRTNLFKEGEKDNMLNS 806

Query: 63  KEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIMAQGSTAKARAKRLQDGLS 120
           +EENET              H+GNSWEN QSQTNQEAIIM QGS  KARAKRLQDGL+
Sbjct: 807 EEENET--------------HAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLN 831

[Close]

BLAST of IVF0019424 vs. NCBI nr
Match: TYK14528.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 1.43e-19
Identity = 55/75 (73.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 43  NFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEAIIM 102
           NFDS TNPF+E EN KMLNN       +AHTNSNE+ENEAH GNSWENFQ QTNQEAI M
Sbjct: 45  NFDSWTNPFKEGENDKMLNN-------EAHTNSNEKENEAHVGNSWENFQRQTNQEAI-M 104

Query: 103 AQGSTAKARAKRLQD 117
           AQ S  KARAK LQD
Sbjct: 105 AQCSMTKARAKILQD 111

The following BLAST results are available for this feature:

BLAST of IVF0019424 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019424 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CW05	3.0e-25	55.40	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A5A7VCL9	3.0e-25	55.40	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53...	[more]
A0A5D3D7R5	1.4e-22	61.54	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3B744	9.2e-19	55.93	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CTJ1	2.4e-14	73.33	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4...	[more]

BLAST of IVF0019424 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15114.1	8.87e-31	55.40	Zinc finger, CCHC-type [Cucumis melo var. makuwa]	[more]
KAA0065903.1	1.30e-30	55.40	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19543.1	3.30e-27	61.54	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036753.1	2.72e-22	55.93	hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820...	[more]
TYK14528.1	1.43e-19	73.33	integrase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0019424 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019424.2	IVF0019424.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0016070	RNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid