IVF0019412 (gene) Melon (IVF77) v1

Overview
NameIVF0019412
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionZf-CCHC domain-containing protein/UBN2 domain-containing protein
Locationchr04: 19372524 .. 19373035 (+)
RNA-Seq ExpressionIVF0019412
SyntenyIVF0019412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGCACTTGGAGGATGAGTCCAAAAAGAAAAGCATTACATTGAAGAGCATCCCTTTGGAAGTTAATCCTAAAGATGATGATTGACCTTGATGAAGATGACATTGCTTATTTTTCATGTAAGTACAAAAATTACATAAAAAAAGAAGTATTTCAAGAAACACCTATCAACCCAAAACAAGTGATCAAAATGTGAGAAAAGCATAAAGGATGAGGTGATTTGTTATGAATGTAAAAAATCGAGTCACATGAGAACATATTGCCCACTCCTCAAATCATTTAAGAAGTCCAAGAAGAAGACAATGAAGGCTACTTGGGATGATAATAGTGAAAGTGGAAGTGAAATTGAAGAAATGGCACACCTTGGTCTCATGGCTTATAGTGACAAAGAAGATAAACATGATGATGAGGTAACTCTAGAACCTCCTTTTATTGATGAATTGTTTGAAAATTTTGAAAGTAGGCAAAATGACCTAGAAAAACTTAGTTCTAAAGTATGTTGTGTTTAA

mRNA sequence

ATGAAGGAGCACTTGGAGGATGAGTCCAAAAAGAAAAGCATTACATTGAAGAGCATCCCTTTGGAAAAAAGCATAAAGGATGAGGTGATTTGTTATGAATGTAAAAAATCGAGTCACATGAGAACATATTGCCCACTCCTCAAATCATTTAAGAAGTCCAAGAAGAAGACAATGAAGGCTACTTGGGATGATAATAGTGAAAGTGGAAGTGAAATTGAAGAAATGGCACACCTTGGTCTCATGGCTTATAGTGACAAAGAAGATAAACATGATGATGAGGTAACTCTAGAACCTCCTTTTATTGATGAATTGTTTGAAAATTTTGAAAGTAGGCAAAATGACCTAGAAAAACTTAGTTCTAAAGTATGTTGTGTTTAA

Coding sequence (CDS)

ATGAAGGAGCACTTGGAGGATGAGTCCAAAAAGAAAAGCATTACATTGAAGAGCATCCCTTTGGAAAAAAGCATAAAGGATGAGGTGATTTGTTATGAATGTAAAAAATCGAGTCACATGAGAACATATTGCCCACTCCTCAAATCATTTAAGAAGTCCAAGAAGAAGACAATGAAGGCTACTTGGGATGATAATAGTGAAAGTGGAAGTGAAATTGAAGAAATGGCACACCTTGGTCTCATGGCTTATAGTGACAAAGAAGATAAACATGATGATGAGGTAACTCTAGAACCTCCTTTTATTGATGAATTGTTTGAAAATTTTGAAAGTAGGCAAAATGACCTAGAAAAACTTAGTTCTAAAGTATGTTGTGTTTAA

Protein sequence

MKEHLEDESKKKSITLKSIPLEKSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESGSEIEEMAHLGLMAYSDKEDKHDDEVTLEPPFIDELFENFESRQNDLEKLSSKVCCV
Homology
BLAST of IVF0019412 vs. ExPASy TrEMBL
Match: A0A5A7TRZ7 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1333G00310 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.2e-36
Identity = 95/164 (57.93%), Postives = 106/164 (64.63%), Query Frame = 0

Query: 1   MKEHLEDES-KKKSITLKSIPL-------------------------------------- 60
           M+EHLEDES KKKSI L +I L                                      
Sbjct: 45  MEEHLEDESKKKKSIALNTISLELEDEDDLDEDDIVYFSRKYKNFIKRKKCFKKYLSTQK 104

Query: 61  ----EKSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESGSEIEEMAH 120
               EKS KDEVICYECKK +H+RT CP LKS KKSK+K MKATWDD+SES SE+EE A+
Sbjct: 105 VSKGEKSKKDEVICYECKKLAHIRTDCPFLKSSKKSKRKAMKATWDDSSESESEVEETAN 164

Query: 121 LGLMAYSDKEDKHDDEVTLEPPFIDELFENFESRQNDLEKLSSK 122
           LGLM  SDKED+HDDEVTLEPP I+ELFENFE+ QNDLEKLSSK
Sbjct: 165 LGLMVQSDKEDEHDDEVTLEPPSIEELFENFENVQNDLEKLSSK 208

BLAST of IVF0019412 vs. ExPASy TrEMBL
Match: A0A5A7SRY3 (Zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00110 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.9e-35
Identity = 83/113 (73.45%), Postives = 94/113 (83.19%), Query Frame = 0

Query: 10  KKKSITLKSIPLEKSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESG 69
           KK   T K    EK+ KDEVI YECKK+ ++RT CP LKS KKSKKK +KATWDD+S+S 
Sbjct: 59  KKHLSTQKESKGEKNKKDEVIYYECKKAGYIRTDCPFLKSSKKSKKKAVKATWDDSSKSE 118

Query: 70  SEIEEMAHLGLMAYSDKEDKHDDEVTLEPPFIDELFENFESRQNDLEKLSSKV 123
           SE+EEMA+LGLMA+SDKED+HDDEVTLE P IDELFENFES QNDLEKLSSKV
Sbjct: 119 SEVEEMANLGLMAHSDKEDEHDDEVTLEHPSIDELFENFESMQNDLEKLSSKV 171

BLAST of IVF0019412 vs. ExPASy TrEMBL
Match: A0A5D3BUV2 (Zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00460 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.9e-35
Identity = 83/113 (73.45%), Postives = 94/113 (83.19%), Query Frame = 0

Query: 10  KKKSITLKSIPLEKSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESG 69
           KK   T K    EK+ KDEVI YECKK+ ++RT CP LKS KKSKKK +KATWDD+S+S 
Sbjct: 99  KKHLSTQKESKGEKNKKDEVIYYECKKAGYIRTDCPFLKSSKKSKKKAVKATWDDSSKSE 158

Query: 70  SEIEEMAHLGLMAYSDKEDKHDDEVTLEPPFIDELFENFESRQNDLEKLSSKV 123
           SE+EEMA+LGLMA+SDKED+HDDEVTLE P IDELFENFES QNDLEKLSSKV
Sbjct: 159 SEVEEMANLGLMAHSDKEDEHDDEVTLEHPSIDELFENFESMQNDLEKLSSKV 211

BLAST of IVF0019412 vs. ExPASy TrEMBL
Match: A0A6J1DY46 (uncharacterized protein LOC111025259 OS=Momordica charantia OX=3673 GN=LOC111025259 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 72/111 (64.86%), Postives = 81/111 (72.97%), Query Frame = 0

Query: 10  KKKSITLKSIPLEKSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESG 69
           KK     K    E S KDEVICYECKK  H+RT CP LKS KKSKKK MKATWDD+ ESG
Sbjct: 98  KKNFSNXKEXKSEXSKKDEVICYECKKPGHIRTDCPFLKSSKKSKKKAMKATWDDSDESG 157

Query: 70  --SEIEEMAHLGLMAYSDKEDKHDDEVTLEPPFIDELFENFESRQNDLEKL 119
             SE EE+A+   MA+SDKED+ DDE+TL+P   DELFE FE+ QNDLEKL
Sbjct: 158 NESENEEVANFCFMAHSDKEDEKDDEITLDPLSYDELFEAFENMQNDLEKL 208

BLAST of IVF0019412 vs. ExPASy TrEMBL
Match: A0A5A7SQF9 (Zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00240 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.0e-26
Identity = 70/116 (60.34%), Postives = 82/116 (70.69%), Query Frame = 0

Query: 10  KKKSITLKSIPLEKSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESG 69
           K++  T K    EKS KDEVICY CKKS H+RT   LL           KATWDD+SES 
Sbjct: 153 KEQLSTQKESKGEKSKKDEVICYACKKSGHIRTNFSLL-----------KATWDDSSESE 212

Query: 70  SEIEEMAHLGLMAYSDKEDKHDDEVTLEPPFIDELFENFESRQNDLEKLSSKVCCV 126
           SE+EEM +LGLMA+S+KED+HDDEVTLEPP IDELFE FES QND+E L   + C+
Sbjct: 213 SEVEEMENLGLMAHSNKEDEHDDEVTLEPPSIDELFEMFESMQNDIENLVLNMLCL 257

BLAST of IVF0019412 vs. NCBI nr
Match: KAA0033952.1 (zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (389), Expect = 7.82e-45
Identity = 95/165 (57.58%), Postives = 108/165 (65.45%), Query Frame = 0

Query: 1   MKEHLEDESKKK-SITLKSIPLE------------------------------------- 60
           MKEHL+DESKKK SI L +I LE                                     
Sbjct: 7   MKEHLKDESKKKKSIALNTISLELEDEDDLDEDDIAYFSRKYRNFIKRKKYFKKHLSTQK 66

Query: 61  -----KSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESGSEIEEMAH 120
                K+ KDEVI YECKK+ ++RT CP LKS KKSKKK +KATWDD+S+S SE+EEMA+
Sbjct: 67  ESKGEKNKKDEVIYYECKKAGYIRTDCPFLKSSKKSKKKAVKATWDDSSKSESEVEEMAN 126

Query: 121 LGLMAYSDKEDKHDDEVTLEPPFIDELFENFESRQNDLEKLSSKV 122
           LGLMA+SDKED+HDDEVTLE P IDELFENFES QNDLEKLSSKV
Sbjct: 127 LGLMAHSDKEDEHDDEVTLEHPSIDELFENFESMQNDLEKLSSKV 171

BLAST of IVF0019412 vs. NCBI nr
Match: XP_031741720.1 (uncharacterized protein LOC116403915 [Cucumis sativus])

HSP 1 Score: 164 bits (415), Expect = 1.28e-44
Identity = 100/166 (60.24%), Postives = 110/166 (66.27%), Query Frame = 0

Query: 1   MKEHLEDESKKK-SITLKSIPLE------------------------------------- 60
           MKEHLEDESKKK SI LK+I LE                                     
Sbjct: 217 MKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLST 276

Query: 61  -------KSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESGSEIEEM 120
                  KS KDEVICYECK+S H+RT CPLLKS KKSKKK MKATWDD+SES SE+EEM
Sbjct: 277 QKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESESEVEEM 336

BLAST of IVF0019412 vs. NCBI nr
Match: TYK02592.1 (zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 7.17e-44
Identity = 83/113 (73.45%), Postives = 94/113 (83.19%), Query Frame = 0

Query: 10  KKKSITLKSIPLEKSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESG 69
           KK   T K    EK+ KDEVI YECKK+ ++RT CP LKS KKSKKK +KATWDD+S+S 
Sbjct: 99  KKHLSTQKESKGEKNKKDEVIYYECKKAGYIRTDCPFLKSSKKSKKKAVKATWDDSSKSE 158

Query: 70  SEIEEMAHLGLMAYSDKEDKHDDEVTLEPPFIDELFENFESRQNDLEKLSSKV 122
           SE+EEMA+LGLMA+SDKED+HDDEVTLE P IDELFENFES QNDLEKLSSKV
Sbjct: 159 SEVEEMANLGLMAHSDKEDEHDDEVTLEHPSIDELFENFESMQNDLEKLSSKV 211

BLAST of IVF0019412 vs. NCBI nr
Match: KAA0046182.1 (zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYK00208.1 zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (394), Expect = 2.19e-43
Identity = 95/164 (57.93%), Postives = 106/164 (64.63%), Query Frame = 0

Query: 1   MKEHLEDESKKK-SITLKSIPLE------------------------------------- 60
           M+EHLEDESKKK SI L +I LE                                     
Sbjct: 45  MEEHLEDESKKKKSIALNTISLELEDEDDLDEDDIVYFSRKYKNFIKRKKCFKKYLSTQK 104

Query: 61  -----KSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESGSEIEEMAH 120
                KS KDEVICYECKK +H+RT CP LKS KKSK+K MKATWDD+SES SE+EE A+
Sbjct: 105 VSKGEKSKKDEVICYECKKLAHIRTDCPFLKSSKKSKRKAMKATWDDSSESESEVEETAN 164

BLAST of IVF0019412 vs. NCBI nr
Match: KAA0032778.1 (zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYK23945.1 zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 1.83e-32
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 22  EKSIKDEVICYECKKSSHMRTYCPLLKSFKKSKKKTMKATWDDNSESGSEIEEMAHLGLM 81
           EKS KDEVICY CKKS H+RT   LLK           ATWDD+SES SE+EEM +LGLM
Sbjct: 165 EKSKKDEVICYACKKSGHIRTNFSLLK-----------ATWDDSSESESEVEEMENLGLM 224

Query: 82  AYSDKEDKHDDEVTLEPPFIDELFENFESRQNDLEKLSSKVCCV 125
           A+S+KED+HDDEVTLEPP IDELFE FES QND+E L   + C+
Sbjct: 225 AHSNKEDEHDDEVTLEPPSIDELFEMFESMQNDIENLVLNMLCL 257

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TRZ77.2e-3657.93Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo... [more]
A0A5A7SRY37.9e-3573.45Zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-... [more]
A0A5D3BUV27.9e-3573.45Zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-... [more]
A0A6J1DY461.6e-2764.86uncharacterized protein LOC111025259 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7SQF93.0e-2660.34Zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-... [more]
Match NameE-valueIdentityDescription
KAA0033952.17.82e-4557.58zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-... [more]
XP_031741720.11.28e-4460.24uncharacterized protein LOC116403915 [Cucumis sativus][more]
TYK02592.17.17e-4473.45zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-... [more]
KAA0046182.12.19e-4357.93zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo v... [more]
KAA0032778.11.83e-3264.42zf-CCHC domain-containing protein/DUF4219 domain-containing protein/UBN2 domain-... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019412.1IVF0019412.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding