IVF0019406 (gene) Melon (IVF77) v1

Overview


Name	IVF0019406
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr06: 17729985 .. 17730446 (+)
RNA-Seq Expression	IVF0019406
Synteny	IVF0019406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGGAGACTTTGCCTGTTGGAAGGCAAAGGAAAAGGCCACTTTTAGACAACAAAAAGACATTGAAAGCCATAATGGATCCTAAAGAACTTCCTAAAACTGTGACCAAAGAACAGATGGAAGAGATGGAGAGTGCACCGTACGGTACCATTGTTTTATATTTGAGTGATAATGTTTTGACAGAAATAATTGATAAAGAAACAACATATGAAATATGGGTGAAATTAGAAGAAATGTATCTTACAAGGGATCTATCTAATCGTGCATACCTTGGAGAAAAGTTCTTTACCTATAATATGGATTCTAATGAATCCTTGACTGACACCCTAAGTGAATTCAAGAAGCTGTCCACTGAATTCCAGAGCTTAGGCGATCAAATAGATGAAGAAAATGAGACTTTCTTCTTGTTAAACTCCCTTTCAGATGAATATAGAGAGGTCAATGTGGCACTCAAGTAG

mRNA sequence

ATGGGAAAGGAGACTTTGCCTGTTGGAAGGCAAAGGAAAAGGCCACTTTTAGACAACAAAAAGACATTGAAAGCCATAATGGATCCTAAAGAACTTCCTAAAACTGTGACCAAAGAACAGATGGAAGAGATGGAGAGTGCACCGTACGGTACCATTGTTTTATATTTGAGTGATAATGTTTTGACAGAAATAATTGATAAAGAAACAACATATGAAATATGGGTGAAATTAGAAGAAATGTATCTTACAAGGGATCTATCTAATCGTGCATACCTTGGAGAAAAGTTCTTTACCTATAATATGGATTCTAATGAATCCTTGACTGACACCCTAAGTGAATTCAAGAAGCTGTCCACTGAATTCCAGAGCTTAGGCGATCAAATAGATGAAGAAAATGAGACTTTCTTCTTGTTAAACTCCCTTTCAGATGAATATAGAGAGGTCAATGTGGCACTCAAGTAG

Coding sequence (CDS)

ATGGGAAAGGAGACTTTGCCTGTTGGAAGGCAAAGGAAAAGGCCACTTTTAGACAACAAAAAGACATTGAAAGCCATAATGGATCCTAAAGAACTTCCTAAAACTGTGACCAAAGAACAGATGGAAGAGATGGAGAGTGCACCGTACGGTACCATTGTTTTATATTTGAGTGATAATGTTTTGACAGAAATAATTGATAAAGAAACAACATATGAAATATGGGTGAAATTAGAAGAAATGTATCTTACAAGGGATCTATCTAATCGTGCATACCTTGGAGAAAAGTTCTTTACCTATAATATGGATTCTAATGAATCCTTGACTGACACCCTAAGTGAATTCAAGAAGCTGTCCACTGAATTCCAGAGCTTAGGCGATCAAATAGATGAAGAAAATGAGACTTTCTTCTTGTTAAACTCCCTTTCAGATGAATATAGAGAGGTCAATGTGGCACTCAAGTAG

Protein sequence

MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVLTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEFQSLGDQIDEENETFFLLNSLSDEYREVNVALK

Homology

[Close]

BLAST of IVF0019406 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-13
Identity = 43/136 (31.62%), Postives = 76/136 (55.88%), Query Frame = 0


Query: 10  RQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVLTEIIDKET 69
           ++R R LL  +   K +    + P T+  E   +++      I L+LSD+V+  IID++T
Sbjct: 21  QRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDT 80

Query: 70  TYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEFQSLGDQID 129
              IW +LE +Y+++ L+N+ YL ++ +  +M    +    L+ F  L T+  +LG +I+
Sbjct: 81  ARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIE 140

Query: 130 EENETFFLLNSLSDEY 146
           EE++   LLNSL   Y
Sbjct: 141 EEDKAILLLNSLPSSY 156

[Close]

BLAST of IVF0019406 vs. ExPASy TrEMBL
Match: A0A5A7V269 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004590 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.0e-77
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV 60
           MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV
Sbjct: 1   MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV 60

Query: 61  LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE 120
           LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE
Sbjct: 61  LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE 120

Query: 121 FQSLGDQIDEENETFFLLNSLSDEYREVNVALK 154
           FQSLGDQIDEENETFFLLNSLSDEYREVNVALK
Sbjct: 121 FQSLGDQIDEENETFFLLNSLSDEYREVNVALK 153

[Close]

BLAST of IVF0019406 vs. ExPASy TrEMBL
Match: A0A5D3BSZ6 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00930 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV 60
           MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV
Sbjct: 1   MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV 60

Query: 61  LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE 120
           LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE
Sbjct: 61  LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE 120

Query: 121 FQSLGDQIDEENETFFLLNSLSDEYRE 148
           FQSLGDQIDEENETFFLLNSLSDEYRE
Sbjct: 121 FQSLGDQIDEENETFFLLNSLSDEYRE 147

[Close]

BLAST of IVF0019406 vs. ExPASy TrEMBL
Match: A0A5C7GU35 (Protein FAR1-RELATED SEQUENCE OS=Acer yangbiense OX=1000413 GN=EZV62_027457 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.8e-26
Identity = 66/154 (42.86%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 2   GKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVL 61
           G   L + R++ + LL  +K LKAI  P++LP ++TKEQ  +M     GTI+L LSDNVL
Sbjct: 290 GSGDLGIWRRKVKALLSQQKILKAIEGPEKLPVSLTKEQKNDMLDMSLGTIILSLSDNVL 349

Query: 62  TEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEF 121
            E+ D++T  ++W KLE +YLT+ L+N+ YL E+ F + MD+++ L + L +FKK+  E 
Sbjct: 350 REVNDEKTACDVWKKLESLYLTKSLTNKIYLKERLFGFKMDASKGLGENLDDFKKMIIEL 409

Query: 122 QSLG--DQIDEENETFFLLNSLSDEYREVNVALK 154
            + G  +++ +ENET  LLNSL D +++V  A+K
Sbjct: 410 ANAGVDEKLSDENETIILLNSLPDSFKDVKAAIK 443

[Close]

BLAST of IVF0019406 vs. ExPASy TrEMBL
Match: A0A5C7H9Q4 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022075 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 64/154 (41.56%), Postives = 102/154 (66.23%), Query Frame = 0


Query: 2   GKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVL 61
           G     + R++ + LL  +K LK I  P++LP ++T EQ  +M     GTI+L LSDNVL
Sbjct: 61  GSGDFSIWRRKVKALLSQQKILKVIEGPEKLPDSLTVEQKNDMLDMALGTIILSLSDNVL 120

Query: 62  TEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEF 121
            E+ D++T+  +W+KLE +YLT+ L+N+ YL EK F + MD+++ L + L +FKK++ E 
Sbjct: 121 REVNDEKTSCYVWMKLESLYLTKSLTNKIYLKEKLFGFKMDASKGLGENLDDFKKMTIEL 180

Query: 122 QSLG--DQIDEENETFFLLNSLSDEYREVNVALK 154
            + G  +++ +ENE F LLNSL D +++V  A+K
Sbjct: 181 ANAGVDEKLSDENEAFILLNSLPDSFKDVKAAIK 214

[Close]

BLAST of IVF0019406 vs. ExPASy TrEMBL
Match: A0A5C7GXL9 (Sucrose-phosphate phosphatase OS=Acer yangbiense OX=1000413 GN=EZV62_025112 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 64/154 (41.56%), Postives = 101/154 (65.58%), Query Frame = 0


Query: 2   GKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVL 61
           G     + R++ + LL  +K LKAI  P++LP ++T EQ ++M     GTI+L LSDNVL
Sbjct: 130 GSGDFGIWRRKVKALLSQQKILKAIEGPEKLPDSLTVEQKDDMLEMALGTIILNLSDNVL 189

Query: 62  TEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEF 121
            EI D++T  ++W KLE +YLT+ L+N+ YL E+ F + MD+++ L   L +FKK++ E 
Sbjct: 190 REINDEKTACDVWKKLESLYLTKSLTNKIYLKERLFGFKMDASKGLGKNLDDFKKMTIEL 249

Query: 122 QSLG--DQIDEENETFFLLNSLSDEYREVNVALK 154
            + G  +++ +ENE   LLNSL D +++V  A+K
Sbjct: 250 ANAGEDEKLSDENEAIILLNSLPDSFKDVKAAIK 283

[Close]

BLAST of IVF0019406 vs. NCBI nr
Match: KAA0060586.1 (putative gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 297 bits (761), Expect = 1.89e-101
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV 60
           MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV
Sbjct: 1   MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV 60

Query: 61  LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE 120
           LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE
Sbjct: 61  LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE 120

Query: 121 FQSLGDQIDEENETFFLLNSLSDEYREVNVALK 153
           FQSLGDQIDEENETFFLLNSLSDEYREVNVALK
Sbjct: 121 FQSLGDQIDEENETFFLLNSLSDEYREVNVALK 153

[Close]

BLAST of IVF0019406 vs. NCBI nr
Match: TYK02285.1 (putative gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (733), Expect = 9.79e-95
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV 60
           MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV
Sbjct: 1   MGKETLPVGRQRKRPLLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNV 60

Query: 61  LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE 120
           LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE
Sbjct: 61  LTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTE 120

Query: 121 FQSLGDQIDEENETFFLLNSLSDEYRE 147
           FQSLGDQIDEENETFFLLNSLSDEYRE
Sbjct: 121 FQSLGDQIDEENETFFLLNSLSDEYRE 147

[Close]

BLAST of IVF0019406 vs. NCBI nr
Match: XP_038887098.1 (uncharacterized protein LOC120077280 [Benincasa hispida])

HSP 1 Score: 145 bits (365), Expect = 2.40e-40
Identity = 69/138 (50.00%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 16  LLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVLTEIIDKETTYEIWV 75
           +L  +K L AI DP + P+T+++ + E +ES  YGTI+L ++D+VL +I+D+ T Y +W 
Sbjct: 27  VLGQQKALLAITDPSKYPETLSEAEKETIESNAYGTIILNVTDSVLRQIMDQPTVYALWN 86

Query: 76  KLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEFQSLGDQIDEENETF 135
           KL E+YL +D  N+ +L E+FFTY MD  +SLTD L+EFK+LS+EF+S+GD I EENE F
Sbjct: 87  KLNEIYLNKDFPNKNFLRERFFTYKMDPTKSLTDNLNEFKRLSSEFRSIGDNIGEENEAF 146

Query: 136 FLLNSLSDEYREVNVALK 153
            L NSL + +++V  ALK
Sbjct: 147 ILFNSLPETFKDVKTALK 164

[Close]

BLAST of IVF0019406 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])

HSP 1 Score: 145 bits (367), Expect = 4.18e-40
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 16  LLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVLTEIIDKETTYEIWV 75
           +L  +K L AI DP + PK + K + E +ES  YGTIVL + D+VL +I+D+ T Y +W 
Sbjct: 27  VLRKQKALLAITDPAKYPKILFKAEKETIESNAYGTIVLNVIDSVLRQIVDRPTAYALWN 86

Query: 76  KLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEFQSLGDQIDEENETF 135
           KL ++YL +DL N+A+L E+FFTY MD  +SLTD L+EFK LS++F+S+GD I EENE F
Sbjct: 87  KLNDIYLNKDLPNKAFLRERFFTYKMDPAKSLTDNLNEFKSLSSDFRSIGDNIGEENEAF 146

Query: 136 FLLNSLSDEYREVNVALK 153
            LLNSL + +++V  ALK
Sbjct: 147 ILLNSLPETFKDVKTALK 164

[Close]

BLAST of IVF0019406 vs. NCBI nr
Match: XP_038890043.1 (uncharacterized protein LOC120079747 [Benincasa hispida])

HSP 1 Score: 143 bits (360), Expect = 1.18e-39
Identity = 70/138 (50.72%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 16  LLDNKKTLKAIMDPKELPKTVTKEQMEEMESAPYGTIVLYLSDNVLTEIIDKETTYEIWV 75
           +L  +K L AI DP + P+T+T+ + E +E    GTIVL ++DNVL ++I++ T Y +W 
Sbjct: 27  VLGQQKALLAITDPAKYPETLTEAEKETIEVNACGTIVLNVTDNVLRQVINQPTAYALWN 86

Query: 76  KLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTLSEFKKLSTEFQSLGDQIDEENETF 135
           KL E+YL +DLSN+A+L E+FFTY MD+ +SLTD L+EFK+LS+EF+S+G  I EENE F
Sbjct: 87  KLNEIYLNKDLSNKAFLRERFFTYKMDAAKSLTDILNEFKRLSSEFRSIGYNIGEENEAF 146

Query: 136 FLLNSLSDEYREVNVALK 153
            LLNSL + +++   A+K
Sbjct: 147 ILLNSLPESFKDAKTAIK 164

The following BLAST results are available for this feature:

BLAST of IVF0019406 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.5e-13	31.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of IVF0019406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V269	6.0e-77	100.00	Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G...	[more]
A0A5D3BSZ6	1.1e-73	100.00	Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G...	[more]
A0A5C7GU35	4.8e-26	42.86	Protein FAR1-RELATED SEQUENCE OS=Acer yangbiense OX=1000413 GN=EZV62_027457 PE=3...	[more]
A0A5C7H9Q4	2.4e-25	41.56	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022075 PE=4 SV=1	[more]
A0A5C7GXL9	1.2e-24	41.56	Sucrose-phosphate phosphatase OS=Acer yangbiense OX=1000413 GN=EZV62_025112 PE=3...	[more]

BLAST of IVF0019406 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060586.1	1.89e-101	100.00	putative gag protein [Cucumis melo var. makuwa]	[more]
TYK02285.1	9.79e-95	100.00	putative gag protein [Cucumis melo var. makuwa]	[more]
XP_038887098.1	2.40e-40	50.00	uncharacterized protein LOC120077280 [Benincasa hispida]	[more]
XP_038885928.1	4.18e-40	52.17	uncharacterized protein LOC120076236 [Benincasa hispida]	[more]
XP_038890043.1	1.18e-39	50.72	uncharacterized protein LOC120079747 [Benincasa hispida]	[more]

BLAST of IVF0019406 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 49..152 e-value: 6.0E-24 score: 84.4
None	No IPR available	PANTHER	PTHR34676:SF12	ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATED	coord: 37..147
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 37..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019406.1	IVF0019406.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0046872	metal ion binding