IVF0019334 (gene) Melon (IVF77) v1

Overview
NameIVF0019334
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGlial fibrillary acidic protein-like
Locationchr11: 10030505 .. 10030753 (-)
RNA-Seq ExpressionIVF0019334
SyntenyIVF0019334
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGTAAGTATGATGATGCTATAGGTCGAATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGTATGGCAGATCAATTCTCAATGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACACGCGACACCAATAGAGAATTGTCTCATTTTCTAGGAATCATAGGACAGTACCTCGGACATTTTGGGTGCTACCATTAG

mRNA sequence

ATGTCGATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGTAAGTATGATGATGCTATAGGTCGAATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGTATGGCAGATCAATTCTCAATGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACACGCGACACCAATAGAGAATTGTCTCATTTTCTAGGAATCATAGGACAGTACCTCGGACATTTTGGGTGCTACCATTAG

Coding sequence (CDS)

ATGTCGATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGTAAGTATGATGATGCTATAGGTCGAATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGTATGGCAGATCAATTCTCAATGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACACGCGACACCAATAGAGAATTGTCTCATTTTCTAGGAATCATAGGACAGTACCTCGGACATTTTGGGTGCTACCATTAG

Protein sequence

MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDTNRELSHFLGIIGQYLGHFGCYH
Homology
BLAST of IVF0019334 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.9e-35
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQFS+QARTLRQGVIPTRDT
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 232

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           ++ELSHFLGIIGQ LG FGCYH
Sbjct: 233 DKELSHFLGIIGQCLGRFGCYH 254

BLAST of IVF0019334 vs. ExPASy TrEMBL
Match: A0A5D3DUN1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17837G00010 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.4e-34
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQF +QARTLRQGVIPTRDT
Sbjct: 62  MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDT 121

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           ++ELSHFLGIIGQ LG FGCYH
Sbjct: 122 DKELSHFLGIIGQCLGRFGCYH 143

BLAST of IVF0019334 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.5e-34
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQFS+QARTLRQGVIPTRDT
Sbjct: 384 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 443

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           ++ELSHFLGIIGQ LG F CYH
Sbjct: 444 DKELSHFLGIIGQCLGRFRCYH 465

BLAST of IVF0019334 vs. ExPASy TrEMBL
Match: A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAI RMERGAEKLRQMAS+ADQFS+QARTLRQGVIPTRD 
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDI 232

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           + ELSHFLGIIGQ LG FGCYH
Sbjct: 233 DEELSHFLGIIGQCLGRFGCYH 254

BLAST of IVF0019334 vs. ExPASy TrEMBL
Match: A0A5A7T0F3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00700 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA MADQFSMQARTLRQGVIPTRDT
Sbjct: 278 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMAGMADQFSMQARTLRQGVIPTRDT 337

Query: 61  NRELSHFLGIIGQYL 76
           NRELSHFLGIIGQYL
Sbjct: 338 NRELSHFLGIIGQYL 352

BLAST of IVF0019334 vs. NCBI nr
Match: TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (384), Expect = 2.13e-45
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQF +QARTLRQGVIPTRDT
Sbjct: 62  MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDT 121

Query: 61  NRELSHFLGIIGQYLGHFGCYH 82
           ++ELSHFLGIIGQ LG FGCYH
Sbjct: 122 DKELSHFLGIIGQCLGRFGCYH 143

BLAST of IVF0019334 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 6.85e-45
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQFS+QARTLRQGVIPTRDT
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 232

Query: 61  NRELSHFLGIIGQYLGHFGCYH 82
           ++ELSHFLGIIGQ LG FGCYH
Sbjct: 233 DKELSHFLGIIGQCLGRFGCYH 254

BLAST of IVF0019334 vs. NCBI nr
Match: TYK05803.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (368), Expect = 9.03e-44
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 0

Query: 1  MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
          MSIDFMMWKDEYETLR KYDD IGRMERGAEKL Q+A MADQFS+QARTLRQGVIPTRDT
Sbjct: 1  MSIDFMMWKDEYETLRHKYDDVIGRMERGAEKLGQIARMADQFSVQARTLRQGVIPTRDT 60

Query: 61 NRELSHFLGIIGQYLGHFGCYH 82
          NRELSHFLG+I QYL  FGCY+
Sbjct: 61 NRELSHFLGVIEQYLRRFGCYY 82

BLAST of IVF0019334 vs. NCBI nr
Match: KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (379), Expect = 3.14e-43
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAI RMERGAEKLRQMAS+ADQFS+QARTLRQGVIPTRD 
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDI 232

Query: 61  NRELSHFLGIIGQYLGHFGCYH 82
           + ELSHFLGIIGQ LG FGCYH
Sbjct: 233 DEELSHFLGIIGQCLGRFGCYH 254

BLAST of IVF0019334 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (382), Expect = 1.11e-41
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQFS+QARTLRQGVIPTRDT
Sbjct: 384 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 443

Query: 61  NRELSHFLGIIGQYLGHFGCYH 82
           ++ELSHFLGIIGQ LG F CYH
Sbjct: 444 DKELSHFLGIIGQCLGRFRCYH 465

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VDD98.9e-3591.46Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DUN14.4e-3490.24Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TXA17.5e-3490.24Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SM491.7e-3390.24Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7T0F32.9e-3398.67Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
TYK27025.12.13e-4590.24glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0065294.16.85e-4591.46glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
TYK05803.19.03e-4486.59glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0025321.13.14e-4390.24glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0046606.11.11e-4190.24glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019334.2IVF0019334.2mRNA