IVF0019320 (gene) Melon (IVF77) v1

Overview


Name	IVF0019320
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr12: 10434642 .. 10434956 (-)
RNA-Seq Expression	IVF0019320
Synteny	IVF0019320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGCTCGTCCGATGTCAGAAACCACTAGAAATGTACTTGCACGAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGTTCGTCCCAAGAAAATGCATGTGAGAATGCCTCAGGCTCAGTTTTCTCGTCCTAGGGTGAAAAGCAGTCCTCCGGCGGTTTATTCCCTTTGCTTCGTATTAGTCATAAGTCATTCGATCTTTGGGGCTCGTACTCCGAGGACTTCAACCCACTCTTCTGGCATGCTCCCTAACACGTTGTCCCAAGGTATAGGTTGGGAAGCAAACTCGTTTGAGGGAGAACTAAGGTGCGACTAA

mRNA sequence

ATGAACGCTCGTCCGATGTCAGAAACCACTAGAAATGTACTTGCACGAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGTTCGTCCCAAGAAAATGCATGTGAGAATGCCTCAGGCTCAGTTTTCTCGTCCTAGGGTGAAAAGCAGTCCTCCGGCGGTTTATTCCCTTTGCTTCGTATTAGTCATAAGTCATTCGATCTTTGGGGCTCGTACTCCGAGGACTTCAACCCACTCTTCTGGCATGCTCCCTAACACGTTGTCCCAAGGTATAGGTTGGGAAGCAAACTCGTTTGAGGGAGAACTAAGGTGCGACTAA

Coding sequence (CDS)

ATGAACGCTCGTCCGATGTCAGAAACCACTAGAAATGTACTTGCACGAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGTTCGTCCCAAGAAAATGCATGTGAGAATGCCTCAGGCTCAGTTTTCTCGTCCTAGGGTGAAAAGCAGTCCTCCGGCGGTTTATTCCCTTTGCTTCGTATTAGTCATAAGTCATTCGATCTTTGGGGCTCGTACTCCGAGGACTTCAACCCACTCTTCTGGCATGCTCCCTAACACGTTGTCCCAAGGTATAGGTTGGGAAGCAAACTCGTTTGAGGGAGAACTAAGGTGCGACTAA

Protein sequence

MNARPMSETTRNVLARGNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHSIFGARTPRTSTHSSGMLPNTLSQGIGWEANSFEGELRCD

Homology

[Close]

BLAST of IVF0019320 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 59/90 (65.56%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 15   ARGNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHSIFGARTPRT 74
            + GNGL+SRTSG  PKK   RMP++QFSR   KS  P V SLCFVLVI+ SIF ARTPRT
Sbjct: 1517 SEGNGLNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRT 1576

Query: 75   STHSSGMLPNTLSQGIGWEANSFEGELRCD 105
            STH++GMLP+  S+GIG EA+S EGEL C+
Sbjct: 1577 STHTTGMLPDMFSRGIGQEASSLEGELWCN 1606

[Close]

BLAST of IVF0019320 vs. ExPASy TrEMBL
Match: A0A5D3CQ36 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00910 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.1e-19
Identity = 54/75 (72.00%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 15 ARGNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHSIFGARTPRT 74
          + GNGLSSRTSG RPKK   RMP  QFSRP VKS PP V SLCFVL IS SIF A T RT
Sbjct: 21 SEGNGLSSRTSGARPKKTRARMPLTQFSRPGVKSDPPTVSSLCFVLAISLSIFEACTLRT 80

Query: 75 STHSSGMLPNTLSQG 90
          STH+ GMLP+T SQG
Sbjct: 81 STHTPGMLPDTFSQG 95

[Close]

BLAST of IVF0019320 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 52/72 (72.22%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 17  GNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHSIFGARTPRTST 76
           GNGLSSRTSG RPKK   RMPQ QFSRP  KS PP V +LC VLV S SIFGA TPRTST
Sbjct: 279 GNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTST 338

Query: 77  HSSGMLPNTLSQ 89
           H+ GMLP+T S+
Sbjct: 339 HTPGMLPDTFSE 350

[Close]

BLAST of IVF0019320 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 6   MSETTRNVLARGNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHS 65
           + E T++  + GNGLSSRTSGVR +K+  RMP+  F   RVKS P  V   C V VIS S
Sbjct: 744 VGERTKH-FSEGNGLSSRTSGVRSRKVRARMPRTLFFHRRVKSVPTTVSLFCVVFVISAS 803

Query: 66  IFGARTPRTSTHSSGMLPNTLSQGIGWEANSFEGEL 102
            FG   PRTS +  G++P+  SQGIGWE +S EGEL
Sbjct: 804 SFGTCAPRTSVYVPGIVPHPFSQGIGWEVSSLEGEL 838

[Close]

BLAST of IVF0019320 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 6   MSETTRNVLARGNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHS 65
           + E T++  + GNGLSSRTSGVR +K+  RMP+  F   RVKS P  V   C V VIS S
Sbjct: 330 VGERTKH-FSEGNGLSSRTSGVRSRKVRARMPRTLFFHHRVKSVPTTVSLFCVVFVISAS 389

Query: 66  IFGARTPRTSTHSSGMLPNTLSQGIGWEANSFEGEL 102
            F    PRTS +  G++P+  SQGIGWE +S EGEL
Sbjct: 390 SFVTCAPRTSVYVPGIVPHPFSQGIGWEVSSLEGEL 424

[Close]

BLAST of IVF0019320 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 4.43e-28
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 17   GNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHSIFGARTPRTST 76
            GNGL+SRTSG  PKK   RMP++QFSR   KS  P V SLCFVLVI+ SIF ARTPRTST
Sbjct: 1519 GNGLNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTST 1578

Query: 77   HSSGMLPNTLSQGIGWEANSFEGELRCD 104
            H++GMLP+  S+GIG EA+S EGEL C+
Sbjct: 1579 HTTGMLPDMFSRGIGQEASSLEGELWCN 1606

[Close]

BLAST of IVF0019320 vs. NCBI nr
Match: KAA0037172.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 8.76e-25
Identity = 54/73 (73.97%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 17 GNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHSIFGARTPRTST 76
          GNGLSSRTSG RPKK   RMP  QFSRP VKS PP V SLCFVL IS SIF A T RTST
Sbjct: 23 GNGLSSRTSGARPKKTRARMPLTQFSRPGVKSDPPTVSSLCFVLAISLSIFEACTLRTST 82

Query: 77 HSSGMLPNTLSQG 89
          H+ GMLP+T SQG
Sbjct: 83 HTPGMLPDTFSQG 95

[Close]

BLAST of IVF0019320 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 7.57e-23
Identity = 52/72 (72.22%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 17  GNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHSIFGARTPRTST 76
           GNGLSSRTSG RPKK   RMPQ QFSRP  KS PP V +LC VLV S SIFGA TPRTST
Sbjct: 279 GNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTST 338

Query: 77  HSSGMLPNTLSQ 88
           H+ GMLP+T S+
Sbjct: 339 HTPGMLPDTFSE 350

[Close]

BLAST of IVF0019320 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.15e-20
Identity = 49/85 (57.65%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 17  GNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHSIFGARTPRTST 76
           GNGLSSRTSGVR +K+  RMP+  F   RVKS P  V   C V VIS S FG   PRTS 
Sbjct: 754 GNGLSSRTSGVRSRKVRARMPRTLFFHRRVKSVPTTVSLFCVVFVISASSFGTCAPRTSV 813

Query: 77  HSSGMLPNTLSQGIGWEANSFEGEL 101
           +  G++P+  SQGIGWE +S EGEL
Sbjct: 814 YVPGIVPHPFSQGIGWEVSSLEGEL 838

[Close]

BLAST of IVF0019320 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.41e-19
Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 17  GNGLSSRTSGVRPKKMHVRMPQAQFSRPRVKSSPPAVYSLCFVLVISHSIFGARTPRTST 76
           GNGLSSRTSGVR +K+  RMP+  F   RVKS P  V   C V VIS S F    PRTS 
Sbjct: 340 GNGLSSRTSGVRSRKVRARMPRTLFFHHRVKSVPTTVSLFCVVFVISASSFVTCAPRTSV 399

Query: 77  HSSGMLPNTLSQGIGWEANSFEGEL 101
           +  G++P+  SQGIGWE +S EGEL
Sbjct: 400 YVPGIVPHPFSQGIGWEVSSLEGEL 424

The following BLAST results are available for this feature:

BLAST of IVF0019320 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	2.6e-23	65.56	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3CQ36	5.1e-19	72.00	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3DFP2	1.1e-18	72.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGQ5	1.1e-16	53.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BG85	1.2e-15	52.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0019320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062888.1	4.43e-28	67.05	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
KAA0037172.1	8.76e-25	73.97	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nucleas...	[more]
TYK22521.1	7.57e-23	72.22	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
KAA0065516.1	2.15e-20	57.65	uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]	[more]
TYJ98800.1	3.41e-19	56.47	uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0019320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019320.1	IVF0019320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0046872	metal ion binding