Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGACTCAAAAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGGTACATATTTAAATATTGTATATAATTACTTAAATTATTTATTCAATTAAATATTTTTAATTTGTTTTTACAATTTACAGAGATCGAACAACGCAAAACTTCGTGATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCTCCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGTAAGAAGTGCCTCATATGACACAAACACAGAGCCAAACTGGTTATGATAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGTTTGGTACAGGATATTATGATGCAGGGGTCGATCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACATGGACGTGACTATGGGGAACATAACAAATATCTGTATCATGAAGCATCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACCACATATAGTTCAGAGTCGACGTCGACGACCAGCTCGAAATCGGCGACGTTCGGGTTGTGAACACATTGATTTTCTTTTATCAATCAAATAA
mRNA sequence
ATGGATGTGACTCAAAAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGAGATCGAACAACGCAAAACTTCGTGATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCTCCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGTTTGGTACAGGATATTATGATGCAGGGGTCGATCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACATGGACGTGACTATGGGGAACATAACAAATATCTGTATCATGAAGCATCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACCACATATAGTTCAGAGTCGACGTCGACGACCAGCTCGAAATCGGCGACGTTCGGGTTGTGAACACATTGATTTTCTTTTATCAATCAAATAA
Coding sequence (CDS)
ATGGATGTGACTCAAAAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGAGATCGAACAACGCAAAACTTCGTGATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCTCCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGTTTGGTACAGGATATTATGATGCAGGGGTCGATCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACATGGACGTGACTATGGGGAACATAACAAATATCTGTATCATGAAGCATCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACCACATATAGTTCAGAGTCGACGTCGACGACCAGCTCGAAATCGGCGACGTTCGGGTTGTGAACACATTGATTTTCTTTTATCAATCAAATAA
Protein sequence
MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRPARNRRRSGCEHIDFLLSIK
Homology
BLAST of IVF0019280 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 163/210 (77.62%), Postives = 175/210 (83.33%), Query Frame = 0
Query: 1 MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEI 60
MDVTQ+YIH YNNITRLYITRPGA VGHLRSNNA+LRDV +DPQQVLDICNNNERY+E+I
Sbjct: 288 MDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKI 347
Query: 61 HNMYDLPIVPPPVHRGRVRVEEAELDEVYHNV-----------------LMTMMPTFGAG 120
HN+YDLPIVPPPVHR R RVEEAELDEVYHNV MTMMPTFGAG
Sbjct: 348 HNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAG 407
Query: 121 YCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQ 180
YCDS+ GYYDA V P SSYMDVGPSTSYM+GHGR YGEHN+YLYHEA DVSDRQEYQ
Sbjct: 408 YCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQ 467
Query: 181 QEPENQEDREPHIVQSRRRRPARNRRRSGC 194
QEP+NQEDRE H VQSRRR+PARNR+ SGC
Sbjct: 468 QEPKNQEDREQHRVQSRRRQPARNRQCSGC 497
BLAST of IVF0019280 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 164/209 (78.47%), Postives = 173/209 (82.78%), Query Frame = 0
Query: 2 DVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIH 61
DVTQ+YIHWY+NITRLYITRPGAAVG RSNNA+LRDVADD QQ LDICNNNERY+EEIH
Sbjct: 13 DVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIH 72
Query: 62 NMYDLPIVPPPVHRGRVRVEEAELDEVYHNV-----------------LMTMMPTFGAGY 121
NMYDLPIVPPPVHRG VRVEEAELD+VYHNV MTMMPTF AGY
Sbjct: 73 NMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGY 132
Query: 122 CDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQ 181
CD + G GYYDAGV PSSSY+DV PSTSYMHGH R YGEHN+YLYHEA ADVSDRQEYQQ
Sbjct: 133 CDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQ 192
Query: 182 EPENQEDREPHIVQSRRRRPARNRRRSGC 194
EPENQEDRE H VQSRRR+P RNRRR GC
Sbjct: 193 EPENQEDREQHRVQSRRRQPTRNRRRPGC 219
BLAST of IVF0019280 vs. ExPASy TrEMBL
Match:
A0A5A7SMM2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002820 PE=4 SV=1)
HSP 1 Score: 281.6 bits (719), Expect = 2.7e-72
Identity = 137/177 (77.40%), Postives = 147/177 (83.05%), Query Frame = 0
Query: 1 MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEI 60
MDVTQ+YIHWYNN+ RLYITR G AVGHLRSNNA+LRDV DD QQVLDICNNNERY++EI
Sbjct: 12 MDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDICNNNERYMDEI 71
Query: 61 HNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTFGAGYCDSKFGTGYYDAGVDP 120
+NMYDLPIVPPPVHRGR + + MTMMPT GAGYCDS+ TGYYD GV P
Sbjct: 72 YNMYDLPIVPPPVHRGR--------SQTGYGSPMTMMPTIGAGYCDSEVDTGYYDTGVSP 131
Query: 121 SSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIV 178
SSSYMDVGPSTSYMH HGR YGEHNKYLYHEA A VSDRQEY+QEPENQEDRE H V
Sbjct: 132 SSSYMDVGPSTSYMHRHGRGYGEHNKYLYHEAPAYVSDRQEYRQEPENQEDREQHRV 180
BLAST of IVF0019280 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 271.2 bits (692), Expect = 3.6e-69
Identity = 139/181 (76.80%), Postives = 146/181 (80.66%), Query Frame = 0
Query: 30 RSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVY 89
RSNNA+LRDVADD QQ LDICNNNERY+EEIHNMYDLPIVPPPVHRG VRVEEAELD+VY
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 90 HNV-----------------LMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTS 149
HNV MTMMPTF AGYCD + G GYYDAGV PSSSY+DV PSTS
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 150 YMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRPARNRRRSG 194
YMHGH R YGEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR+P RNRR G
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNRRCPG 206
BLAST of IVF0019280 vs. ExPASy TrEMBL
Match:
A0A5A7UIF6 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001780 PE=4 SV=1)
HSP 1 Score: 270.8 bits (691), Expect = 4.7e-69
Identity = 136/181 (75.14%), Postives = 144/181 (79.56%), Query Frame = 0
Query: 1 MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEI 60
MDVTQ+YIH YNNITRLYITRPG AVGHLRSNN +LRDV D PQQVLDICNNNE+Y+EEI
Sbjct: 112 MDVTQEYIHLYNNITRLYITRPGEAVGHLRSNNTRLRDVVDYPQQVLDICNNNEKYMEEI 171
Query: 61 HNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTFGAGYCDSKFGTGYYDAGVDP 120
HNMYDLPI + + MT+MPTFGAGYCDSK TGYYDAGV P
Sbjct: 172 HNMYDLPI-----------------SQTGYGSPMTVMPTFGAGYCDSKVSTGYYDAGVGP 231
Query: 121 SSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSR 180
SS YMDVGPS SYMHGHGR YGEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSR
Sbjct: 232 SSLYMDVGPSNSYMHGHGRGYGEHNQYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSR 275
Query: 181 R 182
R
Sbjct: 292 R 275
BLAST of IVF0019280 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 323 bits (828), Expect = 9.60e-110
Identity = 164/209 (78.47%), Postives = 173/209 (82.78%), Query Frame = 0
Query: 2 DVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEIH 61
DVTQ+YIHWY+NITRLYITRPGAAVG RSNNA+LRDVADD QQ LDICNNNERY+EEIH
Sbjct: 13 DVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIH 72
Query: 62 NMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL-----------------MTMMPTFGAGY 121
NMYDLPIVPPPVHRG VRVEEAELD+VYHNV MTMMPTF AGY
Sbjct: 73 NMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGY 132
Query: 122 CDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQ 181
CD + G GYYDAGV PSSSY+DV PSTSYMHGH R YGEHN+YLYHEA ADVSDRQEYQQ
Sbjct: 133 CDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQ 192
Query: 182 EPENQEDREPHIVQSRRRRPARNRRRSGC 193
EPENQEDRE H VQSRRR+P RNRRR GC
Sbjct: 193 EPENQEDREQHRVQSRRRQPTRNRRRPGC 219
BLAST of IVF0019280 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 325 bits (834), Expect = 9.73e-107
Identity = 163/210 (77.62%), Postives = 175/210 (83.33%), Query Frame = 0
Query: 1 MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEI 60
MDVTQ+YIH YNNITRLYITRPGA VGHLRSNNA+LRDV +DPQQVLDICNNNERY+E+I
Sbjct: 288 MDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKI 347
Query: 61 HNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL-----------------MTMMPTFGAG 120
HN+YDLPIVPPPVHR R RVEEAELDEVYHNV MTMMPTFGAG
Sbjct: 348 HNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAG 407
Query: 121 YCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQ 180
YCDS+ GYYDA V P SSYMDVGPSTSYM+GHGR YGEHN+YLYHEA DVSDRQEYQ
Sbjct: 408 YCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQ 467
Query: 181 QEPENQEDREPHIVQSRRRRPARNRRRSGC 193
QEP+NQEDRE H VQSRRR+PARNR+ SGC
Sbjct: 468 QEPKNQEDREQHRVQSRRRQPARNRQCSGC 497
BLAST of IVF0019280 vs. NCBI nr
Match:
KAA0025967.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 281 bits (719), Expect = 8.92e-94
Identity = 137/177 (77.40%), Postives = 147/177 (83.05%), Query Frame = 0
Query: 1 MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEI 60
MDVTQ+YIHWYNN+ RLYITR G AVGHLRSNNA+LRDV DD QQVLDICNNNERY++EI
Sbjct: 12 MDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDICNNNERYMDEI 71
Query: 61 HNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVLMTMMPTFGAGYCDSKFGTGYYDAGVDP 120
+NMYDLPIVPPPVHRGR + + MTMMPT GAGYCDS+ TGYYD GV P
Sbjct: 72 YNMYDLPIVPPPVHRGR--------SQTGYGSPMTMMPTIGAGYCDSEVDTGYYDTGVSP 131
Query: 121 SSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIV 177
SSSYMDVGPSTSYMH HGR YGEHNKYLYHEA A VSDRQEY+QEPENQEDRE H V
Sbjct: 132 SSSYMDVGPSTSYMHRHGRGYGEHNKYLYHEAPAYVSDRQEYRQEPENQEDREQHRV 180
BLAST of IVF0019280 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 271 bits (694), Expect = 1.58e-89
Identity = 139/181 (76.80%), Postives = 146/181 (80.66%), Query Frame = 0
Query: 30 RSNNAKLRDVADDPQQVLDICNNNERYIEEIHNMYDLPIVPPPVHRGRVRVEEAELDEVY 89
RSNNA+LRDVADD QQ LDICNNNERY+EEIHNMYDLPIVPPPVHRG VRVEEAELD+VY
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 90 HNVL-----------------MTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTS 149
HNV MTMMPTF AGYCD + G GYYDAGV PSSSY+DV PSTS
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 150 YMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRRRPARNRRRSG 193
YMHGH R YGEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR+P RNRR G
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNRRCPG 206
BLAST of IVF0019280 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 268 bits (686), Expect = 2.13e-88
Identity = 140/197 (71.07%), Postives = 154/197 (78.17%), Query Frame = 0
Query: 1 MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEI 60
+DVTQ+YIH YN ITRLYIT+ GA RSNNA+LRDVADD QQVLDICNNN+R++EEI
Sbjct: 12 IDVTQEYIHSYN-ITRLYITQLGAT----RSNNARLRDVADDSQQVLDICNNNKRHMEEI 71
Query: 61 HNMYDLPIVPPPVHRGRVRVEEAELDEVYHNVL-----------------MTMMPTFGAG 120
HNMY LPIVPP +HRGRV+VEEAELDEVYHNV M MMPTFG G
Sbjct: 72 HNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVG 131
Query: 121 YCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQ 180
YCD + T YYD+GV PSSSYMDVGPSTSYMHGH DYGEHN+YLYHEA +VSDRQEYQ
Sbjct: 132 YCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDRQEYQ 191
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DJV7 | 2.1e-85 | 77.62 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
A0A5A7V342 | 1.0e-84 | 78.47 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5A7SMM2 | 2.7e-72 | 77.40 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5D3BSG8 | 3.6e-69 | 76.80 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
A0A5A7UIF6 | 4.7e-69 | 75.14 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
Match Name | E-value | Identity | Description | |
KAA0062642.1 | 9.60e-110 | 78.47 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
TYK23842.1 | 9.73e-107 | 77.62 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
KAA0025967.1 | 8.92e-94 | 77.40 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
TYK01176.1 | 1.58e-89 | 76.80 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
KAA0025972.1 | 2.13e-88 | 71.07 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
Match Name | E-value | Identity | Description | |