IVF0019252 (gene) Melon (IVF77) v1

Overview


Name	IVF0019252
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 12346675 .. 12346923 (+)
RNA-Seq Expression	IVF0019252
Synteny	IVF0019252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAATGACTCAGCTCATCAAGAAGGCGAGAGCAATACCCAGGCAGGAAAGGCCAAGCCAAGGAAGCCAGAGAGCCAACAACAGAGGAATAACCCTAAATGCGGTCTGCTAAGAGAGGTGGTTAGGCGATCGAGGGGAAGAGCTATGTTTTACCTTTACACCTCTAGGTACCTGCTGCGACGAGTAGTGTTTAATGATGCAGAGAGAAAAGGGTTATTGAGGACTGCTCTTGAGATAGGATGCTGA

mRNA sequence

ATGTCAAATGACTCAGCTCATCAAGAAGGCGAGAGCAATACCCAGGCAGGAAAGGCCAAGCCAAGGAAGCCAGAGAGCCAACAACAGAGGAATAACCCTAAATGCGGTCTGCTAAGAGAGGTGGTTAGGCGATCGAGGGGAAGAGCTATGTTTTACCTTTACACCTCTAGGTACCTGCTGCGACGAGTAGTGTTTAATGATGCAGAGAGAAAAGGGTTATTGAGGACTGCTCTTGAGATAGGATGCTGA

Coding sequence (CDS)

ATGTCAAATGACTCAGCTCATCAAGAAGGCGAGAGCAATACCCAGGCAGGAAAGGCCAAGCCAAGGAAGCCAGAGAGCCAACAACAGAGGAATAACCCTAAATGCGGTCTGCTAAGAGAGGTGGTTAGGCGATCGAGGGGAAGAGCTATGTTTTACCTTTACACCTCTAGGTACCTGCTGCGACGAGTAGTGTTTAATGATGCAGAGAGAAAAGGGTTATTGAGGACTGCTCTTGAGATAGGATGCTGA

Protein sequence

MSNDSAHQEGESNTQAGKAKPRKPESQQQRNNPKCGLLREVVRRSRGRAMFYLYTSRYLLRRVVFNDAERKGLLRTALEIGC

Homology

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BLAST of IVF0019252 vs. ExPASy TrEMBL
Match: A0A5D3BZT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00500 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 4   DSAHQEGESNTQAGKAKPRKPESQQQRNNPKCGLLREVVRRSRGRAMFYLYTSRYLLRR 63
           + AHQEGESNTQAGKAKPRKPESQQQRNNPKCGLLREVVRRSRGRAMFYLYTSR L+ R
Sbjct: 82  EEAHQEGESNTQAGKAKPRKPESQQQRNNPKCGLLREVVRRSRGRAMFYLYTSRMLMTR 140

[Close]

BLAST of IVF0019252 vs. NCBI nr
Match: KAA0063958.1 (hypothetical protein E6C27_scaffold616G001090 [Cucumis melo var. makuwa] >TYK05181.1 hypothetical protein E5676_scaffold1415G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 1.52e-26
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 6   AHQEGESNTQAGKAKPRKPESQQQRNNPKCGLLREVVRRSRGRAMFYLYTSRYLLRR 62
           AHQEGESNTQAGKAKPRKPESQQQRNNPKCGLLREVVRRSRGRAMFYLYTSR L+ R
Sbjct: 84  AHQEGESNTQAGKAKPRKPESQQQRNNPKCGLLREVVRRSRGRAMFYLYTSRMLMTR 140

The following BLAST results are available for this feature:

BLAST of IVF0019252 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZT1	1.1e-19	91.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0019252 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063958.1	1.52e-26	94.74	hypothetical protein E6C27_scaffold616G001090 [Cucumis melo var. makuwa] >TYK051...	[more]

BLAST of IVF0019252 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019252.1	IVF0019252.1	mRNA