IVF0019154 (gene) Melon (IVF77) v1

Overview


Name	IVF0019154
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L6
Location	chr01: 2926157 .. 2929128 (+)
RNA-Seq Expression	IVF0019154
Synteny	IVF0019154

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTGCAAGTCACTGTGTCATCTTCTTCGTAATCGGACCCAAAGGGGGTCTCTCTCGCTCTTTCTCATTTGGGTGTTCTGTTCTCACACTCGTAATGGCACTCTCTTCTCCTCCTTCTCTTCAACCTCCAAGTTTGATACACTCACCTAAGTAAGTTCTTGTTTTTTTTTTCTTTTTTCTTTTTTAAATATATGAATTCGTGGTAATTCGTGCCCACATTTTTGGCTATTTAGCTGACTTAATTTGAGGATATCTGTCTAGACCTTAGGAAACTCTTTGGGAGACCCATTTTCAGGGTTCGGGTTTTATAGATGATTTACAAGTACCAGGAATTTTCTTAATTGTTCCTTTTTTTCGCATTCAGAGAGCTTCTTGAAACGCATCGCTTGACTTTGAGGTTGTTGGGGTTGTGTGTCTTCCATTTTGGTATAATTATGAATTAGTTATATCTATAATTTCTTTGTTGAATTATTTCAAGTATGTAGCCATTCCACCAAGACGTTGGGAACAAACCTTCACGTAATTCAGAGTGAATGTTGAGTTCGCTTGTAGATTAAATACATCTTACTTCGTCAATGTGAAATAGGGGAAGAATGACATCTCCATATTGATTAATTTTGTGGATTCTCCCTTAAGCATCCAAGTATAATTGGGGTGGGTCTTAATGATAAGGTGAAAGATTCAATATTGAGTGAGTTGTTTTTTAAATTACTAATGCCTTGTTTGATAACCATTTGGTGTCTATAAATAAAACTTATAAACACTGCTTCTATTCTTAAGTTTCTAAATTTGTTGTTCGTTTTCAATTCATGTTTTCAAAAACCAAGTTGAGTTCAGAAACAAAAGACAGCAATCTAGAGAAATGTTAAAGAAAATGTGAATTTTTTTTCTGCTGGTCATGATGCCATTAAGGTGTAGATATGGTGGATAGAATTTAGATTAAGTGTCGTACCAGGGTCCTTAAATCTAGTTTTGTTTTTATGTTGTCCTAATATTGTAGTTGTTGGTAAAAAATATTTATGTCTGCCATATCCAGTTGGGAGGTTTCAATCCTCTGCTGTTTGAATATGTTTAGAGCTTCTGTTACACTGGCCTTTGGGTTGTTTTTTGTGTGTTTGAACCTTTAGCCATCACTAACAATGGCCATCTACACAGTATCCTTTCTTTTATCTGATTGGCTCCTTGCAGTTAGAGAGTTATCAAGAAATTAGAATTATGGACATTTCTTGAAAATGGAGTGAGTCTATTGGAAGGTTTTTCTTACTCTATTGATTTACTGAGTAGGGCTTGTAAGGGTACCCTTGAATTGATGTTCTCAAGCAAGTAAGCTTATGGAGCGTATAAAGCCAAGGCTTAGATGATGGATAACGATAGTTTGAGCTCCTTGAAGAGAAGTCTTATTACTATAAAATAAAGAATAAGAAACTATTACATAAACACATCAGTCGGTTACCAACATGAGCATAACACTCCCTTTTGAAGTTCAAATCCCCATATGCACATTTGTTGTTCTCAAATAAGCATCTTAGTAGGTTTCAATTTTTCCTAGGACTAGAATGTTTAATATTTATCCAGTTGAGCCGCAAATGATTTAAGACTTATGTTGTCTGTTTGATACAAAGGAAAAAGAATCAATTTTCTTTATTTGTACTCCTTTTGTTTCAACATCTTTTTTCTTTTTGTATTTAGGGAATGGTTATATATAAAAATACGTTCATTGTTTGTCTATTGAAACCATTTTCCTCATTGTATCTCAGCAACTTTCGGTCTACATTTTTGGGAGAAAAAAATGGGTTCTGTGTTTCTGCAATGCCTGTATGTCATATTGGTTTGTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTTACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTAGGAGAACTTTCAATTCTTTATCCACGAGAAGTTAAAATTGAGAGGGAAGATTCTGGGATTATAAGAGTTAAGAAAGCACTAGAGACAAGAAGAGCCAATCAAATGCATGGACTTTTCAGGTATTCTTATCATGGATTTCACTTTTCTTCCTTTTTAAGTTTTACTTGGATGATATAACATCAAATTTATCTTCACCTATTAACTTAATCTTTTGGGTTATTTGGAGATAGTTTACACGGATCACTTGCTTTTATGTCTCTCTAAATTCTGAAAATCCCAAGATGACTTCATGTTAAATGCAAACAACCAGCCCTTTGTTCCTTAAGAAATTCAAATGAATTATGGCTGATGGAGAAAGAGTGAATGTGTTGGCATGGTGTCATATATGACCATTTGAACTGATTTCCTCAGGACGCTTACGGACAACATGGTGGTAGGAGTATCGAAGGGGTTCGAAAAGAAACTTCAATTGATCGGCGTCGGTTATCGAGCGATGGTAGAAGGAAAAGACCTGGTATTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCGATACCGGATGGGATTCAGATAAAAGTGGAAGAAAACACAAGAATTACAGTGAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATCGTAAGAAGAAAAGAAGGAAAAGCAGGGAAGAAGAAGTAATGGCTTGTAATTCATTGTTGGTTTTTTAATCTCTCTTTTTGAAATATTTGTATTTTTTTTTTCTAGTATCAGAAAGGATTATTGTCACATAACCGTTTGACTTTCTTTTCTTTGTCCATTGGATGTGAAAATTTGCTAGAATTCTTTCTTTCCCCTCTAATCTTCTTATTCTCCATCTCTTCTTTCTTTTTCTTCTCTCCATCTCTTCTGCTTTGAAATGTACATTCACAATCTTTCTGTTGTATTAAATGTGAATTTCAAACGAGTTTGGTGCACC

mRNA sequence

GCCTGCAAGTCACTGTGTCATCTTCTTCGTAATCGGACCCAAAGGGGGTCTCTCTCGCTCTTTCTCATTTGGGTGTTCTGTTCTCACACTCGTAATGGCACTCTCTTCTCCTCCTTCTCTTCAACCTCCAAGTTTGATACACTCACCTAACAACTTTCGGTCTACATTTTTGGGAGAAAAAAATGGGTTCTGTGTTTCTGCAATGCCTGTATGTCATATTGGTTTGTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTTACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTAGGAGAACTTTCAATTCTTTATCCACGAGAAGTTAAAATTGAGAGGGAAGATTCTGGGATTATAAGAGTTAAGAAAGCACTAGAGACAAGAAGAGCCAATCAAATGCATGGACTTTTCAGGACGCTTACGGACAACATGGTGGTAGGAGTATCGAAGGGGTTCGAAAAGAAACTTCAATTGATCGGCGTCGGTTATCGAGCGATGGTAGAAGGAAAAGACCTGGTATTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCGATACCGGATGGGATTCAGATAAAAGTGGAAGAAAACACAAGAATTACAGTGAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATCGTAAGAAGAAAAGAAGGAAAAGCAGGGAAGAAGAAGTAATGGCTTGTAATTCATTGTTGGTTTTTTAATCTCTCTTTTTGAAATATTTGTATTTTTTTTTTCTAGTATCAGAAAGGATTATTGTCACATAACCGTTTGACTTTCTTTTCTTTGTCCATTGGATGTGAAAATTTGCTAGAATTCTTTCTTTCCCCTCTAATCTTCTTATTCTCCATCTCTTCTTTCTTTTTCTTCTCTCCATCTCTTCTGCTTTGAAATGTACATTCACAATCTTTCTGTTGTATTAAATGTGAATTTCAAACGAGTTTGGTGCACC

Coding sequence (CDS)

ATGGCACTCTCTTCTCCTCCTTCTCTTCAACCTCCAAGTTTGATACACTCACCTAACAACTTTCGGTCTACATTTTTGGGAGAAAAAAATGGGTTCTGTGTTTCTGCAATGCCTGTATGTCATATTGGTTTGTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTTACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTAGGAGAACTTTCAATTCTTTATCCACGAGAAGTTAAAATTGAGAGGGAAGATTCTGGGATTATAAGAGTTAAGAAAGCACTAGAGACAAGAAGAGCCAATCAAATGCATGGACTTTTCAGGACGCTTACGGACAACATGGTGGTAGGAGTATCGAAGGGGTTCGAAAAGAAACTTCAATTGATCGGCGTCGGTTATCGAGCGATGGTAGAAGGAAAAGACCTGGTATTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCGATACCGGATGGGATTCAGATAAAAGTGGAAGAAAACACAAGAATTACAGTGAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATCGTAAGAAGAAAAGAAGGAAAAGCAGGGAAGAAGAAGTAA

Protein sequence

MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK

Homology

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BLAST of IVF0019154 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.6e-94
Identity = 172/233 (73.82%), Postives = 196/233 (84.12%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MA S   S QP          RS FLG++N F VS+ P   +G   KTIECKESRIGKQP
Sbjct: 1   MASSLVSSFQP----------RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           I VPSNVTI L+GQDLKVKGPLGEL++ YPREV++ +E+SG +RVKK +ETRRANQMHGL
Sbjct: 61  IAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKL L+GVGYRA V+GK+LVLNLGFSHPV+M IPD +++KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 234
           NTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

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BLAST of IVF0019154 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 338.2 bits (866), Expect = 7.4e-92
Identity = 162/216 (75.00%), Postives = 190/216 (87.96%), Query Frame = 0


Query: 18  PNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLK 77
           P++ +S FLG K     S +PV  IG  RK+++CKESRIGKQPI VP+NV I ++GQDLK
Sbjct: 6   PSHMKSVFLGMKVEISTS-VPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAMEGQDLK 65

Query: 78  VKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFE 137
           VKGPLGELSI YPREV +E+++SG +RV+KA+ETRRANQMHGLFRTLTDNMVVGVSKGFE
Sbjct: 66  VKGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVGVSKGFE 125

Query: 138 KKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQF 197
           KKLQL+GVGYRA VEGKDL+L+LGFSHPVRMAIPD +Q+KVEENT++TVSG DK  +GQF
Sbjct: 126 KKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQF 185

Query: 198 AASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 234
           AA+IR WRPPEPYKGKGV+Y DE+VRRKEGKAGKKK
Sbjct: 186 AATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

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BLAST of IVF0019154 vs. ExPASy Swiss-Prot
Match: B0C1E7 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 5.8e-52
Identity = 105/179 (58.66%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 54  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRR 113
           SRIGK PI +P  V +T++GQ + VKGP GELS     EV IE+ D+ ++ V +  E+R 
Sbjct: 2   SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADN-LVTVTRRNESRI 61

Query: 114 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDG 173
           A Q HGL RTL  NMV GVSKGFEKKLQ+ GVGYRA V+G++L+LN+G+S+PV +  P+G
Sbjct: 62  ARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEG 121

Query: 174 IQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 233
           +Q+ VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 122 VQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

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BLAST of IVF0019154 vs. ExPASy Swiss-Prot
Match: B7KI01 (50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rplF PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-50
Identity = 99/179 (55.31%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 54  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRR 113
           SRIGK+PI +P+ VT+ + G  + VKGP GEL    P  V +E +D G++RV +  ++R 
Sbjct: 2   SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVE-QDEGVLRVVRQDDSRT 61

Query: 114 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDG 173
           A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSG 121

Query: 174 IQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 233
           I + VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  E+VRRK GK GKK
Sbjct: 122 IGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKTGKK 179

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BLAST of IVF0019154 vs. ExPASy Swiss-Prot
Match: Q8YPJ3 (50S ribosomal protein L6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplF PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-50
Identity = 99/178 (55.62%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 54  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRR 113
           SRIGK+PI VP+ V +T+ G  + VKGP GELS   P  V + +E    ++V +  ETR 
Sbjct: 2   SRIGKRPITVPAKVQVTIDGTKVVVKGPKGELSRELPANVSVSQEGE-TLQVTRRDETRT 61

Query: 114 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDG 173
           + Q+HGL RTL  NMV GVS+GF+++L++ GVGYRA V+G++LVLN+G+SH V++  PDG
Sbjct: 62  SRQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLVLNMGYSHQVQIEPPDG 121

Query: 174 IQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGK 232
           IQ  VE NT + VSGYDK  +G  AA +R  RPPEPYKGKG++YA E+VRRK GK GK
Sbjct: 122 IQFVVENNTNVIVSGYDKEIVGNTAAKVRAVRPPEPYKGKGIRYAGEVVRRKAGKTGK 178

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BLAST of IVF0019154 vs. ExPASy TrEMBL
Match: A0A1S3C0W5 (50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 PE=3 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.0e-128
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 234
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

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BLAST of IVF0019154 vs. ExPASy TrEMBL
Match: A0A0A0K3K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 3.7e-126
Identity = 229/233 (98.28%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MALSSPPSLQPP+ IHSPNNFRSTFLGEKNGFCVSAMP CHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           IQVPS+VTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 234
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

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BLAST of IVF0019154 vs. ExPASy TrEMBL
Match: A0A6J1GLT4 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455470 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.2e-114
Identity = 211/233 (90.56%), Postives = 220/233 (94.42%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MA+SS P L   SLI   NNFRSTFLGEKNGF +S MPV H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLI--ANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           IQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 234
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of IVF0019154 vs. ExPASy TrEMBL
Match: A0A6J1HVU0 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468304 PE=3 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 6.1e-113
Identity = 209/233 (89.70%), Postives = 219/233 (93.99%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MA+SS P L   SLI   NNFRSTFLGEKNGF +S MPV H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLI--ANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           IQVPSNV ITLQGQDLKVKGPLGELSI+YPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSIIYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPV MAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVIMAIPEGLQVKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 234
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of IVF0019154 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111
Identity = 201/215 (93.49%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 19  NNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKV 78
           +NFRSTFLGEKNGF VS MPVCHIGLLRKTIECKESRIGKQPIQVPSNV I LQGQDLKV
Sbjct: 12  SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVIIALQGQDLKV 71

Query: 79  KGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 138
           KGPLGELSILYPREVKIEREDSGI+RVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 72  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 131

Query: 139 KLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFA 198
           KLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+KVEENTRITVSGYDKCAIGQFA
Sbjct: 132 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 191

Query: 199 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 234
           ASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 192 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of IVF0019154 vs. NCBI nr
Match: XP_008455431.1 (PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo])

HSP 1 Score: 462 bits (1189), Expect = 4.61e-164
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of IVF0019154 vs. NCBI nr
Match: XP_004144493.1 (50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetical protein Csa_020508 [Cucumis sativus])

HSP 1 Score: 455 bits (1171), Expect = 2.56e-161
Identity = 229/233 (98.28%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MALSSPPSLQPP+ IHSPNNFRSTFLGEKNGFCVSAMP CHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           IQVPS+VTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of IVF0019154 vs. NCBI nr
Match: XP_038888704.1 (50S ribosomal protein L6, chloroplastic [Benincasa hispida])

HSP 1 Score: 439 bits (1128), Expect = 9.19e-155
Identity = 218/233 (93.56%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MA+SS PSLQPPSL+H+ NNFRSTFLGE+NGF VSAMPVCHIG+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPSLQPPSLMHTANNFRSTFLGERNGFYVSAMPVCHIGVLRKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           I VPSNVTI+LQGQDLKVKGPLGELSILYPRE+KIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IPVPSNVTISLQGQDLKVKGPLGELSILYPREIKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPV+MAIPDGIQ+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVKMAIPDGIQVKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of IVF0019154 vs. NCBI nr
Match: XP_022952947.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 415 bits (1067), Expect = 1.70e-145
Identity = 211/233 (90.56%), Postives = 220/233 (94.42%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MA+SS P L   SLI   NNFRSTFLGEKNGF +S MPV H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLIA--NNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           IQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of IVF0019154 vs. NCBI nr
Match: KAG6572299.1 (50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 415 bits (1066), Expect = 2.41e-145
Identity = 210/233 (90.13%), Postives = 220/233 (94.42%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MA+SS P L   SLI   NNFRSTFLGEKNGF +S MPV H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLIA--NNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           IQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 231

[Close]

BLAST of IVF0019154 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 345.9 bits (886), Expect = 2.5e-95
Identity = 172/233 (73.82%), Postives = 196/233 (84.12%), Query Frame = 0


Query: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60
           MA S   S QP          RS FLG++N F VS+ P   +G   KTIECKESRIGKQP
Sbjct: 1   MASSLVSSFQP----------RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQP 60

Query: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120
           I VPSNVTI L+GQDLKVKGPLGEL++ YPREV++ +E+SG +RVKK +ETRRANQMHGL
Sbjct: 61  IAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180
           FRTLTDNMVVGVSKGFEKKL L+GVGYRA V+GK+LVLNLGFSHPV+M IPD +++KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 234
           NTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of IVF0019154 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-20
Identity = 44/98 (44.90%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 136 FEKKLQLIGVGYRAMVE--GKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCA 195
           F + L+++GVGY+A  E  G+ L L LG+SH V +A+P  +++   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 196 IGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGK 232
           + QFAA++R  +PPEPYKGKG+ Y DE+V++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

The following BLAST results are available for this feature:

BLAST of IVF0019154 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23049	3.6e-94	73.82	50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ...	[more]
P82193	7.4e-92	75.00	50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=...	[more]
B0C1E7	5.8e-52	58.66	50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]
B7KI01	1.4e-50	55.31	50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN...	[more]
Q8YPJ3	1.4e-50	55.62	50S ribosomal protein L6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]

BLAST of IVF0019154 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0W5	3.0e-128	100.00	50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 ...	[more]
A0A0A0K3K9	3.7e-126	98.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1	[more]
A0A6J1GLT4	4.2e-114	90.56	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HVU0	6.1e-113	89.70	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1C3Z5	1.1e-111	93.49	50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of IVF0019154 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455431.1	4.61e-164	100.00	PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo]	[more]
XP_004144493.1	2.56e-161	98.28	50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetic...	[more]
XP_038888704.1	9.19e-155	93.56	50S ribosomal protein L6, chloroplastic [Benincasa hispida]	[more]
XP_022952947.1	1.70e-145	90.56	50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata]	[more]
KAG6572299.1	2.41e-145	90.13	50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of IVF0019154 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05190.1	2.5e-95	73.82	Ribosomal protein L6 family	[more]
AT2G18400.1	1.2e-20	44.90	ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 124..149 score: 60.3 coord: 152..168 score: 49.15 coord: 194..215 score: 66.42
IPR019906	Ribosomal protein L6, bacterial-type	TIGRFAM	TIGR03654	TIGR03654	coord: 54..229 e-value: 2.3E-71 score: 237.1
IPR019906	Ribosomal protein L6, bacterial-type	HAMAP	MF_01365_B	Ribosomal_L6_B	coord: 53..229 score: 37.114765
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 63..135 e-value: 4.9E-15 score: 56.0 coord: 143..217 e-value: 1.1E-19 score: 70.9
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 52..135 e-value: 8.2E-26 score: 92.3
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 136..233 e-value: 6.7E-41 score: 140.4
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 54..135
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 136..229
None	No IPR available	PANTHER	PTHR11655:SF38	BNAA10G03220D PROTEIN	coord: 20..233
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 20..233
IPR002358	Ribosomal protein L6, conserved site	PROSITE	PS00525	RIBOSOMAL_L6_1	coord: 207..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019154.1	IVF0019154.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome